Danio rerio

58 known processes

plod3

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3

(Aliases: cb479,wu:fb72f10,im:6912725,MGC162023,diwanka,cb816)

plod3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
neuron development GO:0048666 262 0.981
axon development GO:0061564 166 0.948
larval development GO:0002164 2 0.921
Worm
locomotion GO:0040011 313 0.917
neuron differentiation GO:0030182 353 0.836
embryonic organ development GO:0048568 381 0.831
ion transmembrane transport GO:0034220 91 0.759
inorganic ion transmembrane transport GO:0098660 57 0.725
aging GO:0007568 2 0.720
cell projection organization GO:0030030 284 0.676
single organism transport GO:0044765 206 0.585
Worm
response to chemical GO:0042221 320 0.547
chordate embryonic development GO:0043009 271 0.509
Mouse
transport GO:0006810 220 0.468
Worm
regulation of neurogenesis GO:0050767 87 0.452
response to external stimulus GO:0009605 264 0.451
neuron projection guidance GO:0097485 86 0.444
axonal defasciculation GO:0007414 2 0.364
cation transmembrane transport GO:0098655 65 0.351
maintenance of location GO:0051235 4 0.335
cell morphogenesis involved in differentiation GO:0000904 195 0.333
neuron projection morphogenesis GO:0048812 161 0.321
embryonic organ morphogenesis GO:0048562 274 0.319
single organism localization GO:1902578 225 0.310
Worm
establishment of localization GO:0051234 244 0.310
Worm
nucleobase containing small molecule metabolic process GO:0055086 32 0.305
Worm
response to abiotic stimulus GO:0009628 122 0.296
cellular component morphogenesis GO:0032989 336 0.288
notochord development GO:0030903 54 0.278
cell part morphogenesis GO:0032990 246 0.264
generation of neurons GO:0048699 385 0.247
regulation of cell differentiation GO:0045595 142 0.244
response to organic cyclic compound GO:0014070 51 0.230
cell migration GO:0016477 237 0.228
neuron projection development GO:0031175 180 0.218
vesicle mediated transport GO:0016192 22 0.218
Worm
regulation of response to stimulus GO:0048583 269 0.218
lipid storage GO:0019915 1 0.211
regulation of multicellular organismal process GO:0051239 277 0.209
cell morphogenesis involved in neuron differentiation GO:0048667 163 0.209
neurological system process GO:0050877 62 0.207
myofibril assembly GO:0030239 48 0.197
negative regulation of cellular process GO:0048523 283 0.194
response to organic substance GO:0010033 153 0.181
regulation of cell development GO:0060284 100 0.180
stem cell development GO:0048864 82 0.178
single organism metabolic process GO:0044710 217 0.165
Mouse Worm
regulation of cellular component organization GO:0051128 86 0.164
localization of cell GO:0051674 244 0.159
regulation of axonogenesis GO:0050770 32 0.156
ameboidal type cell migration GO:0001667 143 0.156
regulation of cell morphogenesis involved in differentiation GO:0010769 38 0.153
regulation of neuron differentiation GO:0045664 56 0.137
biosynthetic process GO:0009058 294 0.128
Worm
regulation of biological quality GO:0065008 263 0.128
Mouse
macromolecule biosynthetic process GO:0009059 227 0.126
Worm
embryonic neurocranium morphogenesis GO:0048702 15 0.123
organelle organization GO:0006996 227 0.120
response to stress GO:0006950 263 0.117
positive regulation of cellular catabolic process GO:0031331 3 0.117
notochord formation GO:0014028 6 0.112
ion transport GO:0006811 114 0.110
adult behavior GO:0030534 2 0.107
tube morphogenesis GO:0035239 349 0.104
macromolecule localization GO:0033036 54 0.101
Mouse
negative regulation of biological process GO:0048519 304 0.096
regulation of cell communication GO:0010646 232 0.096
developmental growth involved in morphogenesis GO:0060560 86 0.095
axon guidance GO:0007411 86 0.090
cation transport GO:0006812 81 0.089
skin development GO:0043588 54 0.088
Mouse
positive regulation of biological process GO:0048518 253 0.087
system process GO:0003008 185 0.087
Mouse
autophagy GO:0006914 4 0.086
muscle cell development GO:0055001 115 0.086
nitrogen compound metabolic process GO:0006807 319 0.084
Worm
behavior GO:0007610 74 0.083
regulation of heart contraction GO:0008016 32 0.083
transmembrane transport GO:0055085 120 0.081
cell morphogenesis GO:0000902 289 0.080
cellular response to external stimulus GO:0071496 2 0.080
regulation of autophagy GO:0010506 3 0.079
morphogenesis of an epithelium GO:0002009 333 0.079
Mouse
hindbrain development GO:0030902 91 0.078
central nervous system development GO:0007417 387 0.077
regulation of transmembrane transport GO:0034762 18 0.073
cellular response to organic cyclic compound GO:0071407 38 0.073
regulation of cell shape GO:0008360 1 0.073
signal transduction GO:0007165 455 0.072
organic substance biosynthetic process GO:1901576 289 0.071
Worm
cognition GO:0050890 1 0.071
neural crest cell differentiation GO:0014033 72 0.070
visual perception GO:0007601 17 0.069
chromosome organization GO:0051276 31 0.068
alcohol biosynthetic process GO:0046165 2 0.068
muscle organ development GO:0007517 101 0.067
striated muscle cell development GO:0055002 108 0.067
regulation of signaling GO:0023051 235 0.067
muscle cell differentiation GO:0042692 139 0.067
embryonic skeletal system development GO:0048706 97 0.067
positive regulation of nitrogen compound metabolic process GO:0051173 69 0.064
response to oxygen containing compound GO:1901700 55 0.064
er to golgi vesicle mediated transport GO:0006888 1 0.063
skeletal muscle organ development GO:0060538 78 0.061
muscle structure development GO:0061061 196 0.060
heterocycle metabolic process GO:0046483 290 0.059
Worm
head development GO:0060322 303 0.059
cellular component movement GO:0006928 335 0.058
basement membrane assembly GO:0070831 3 0.057
Mouse
ubiquitin dependent protein catabolic process GO:0006511 3 0.056
regulation of localization GO:0032879 104 0.056
protein alkylation GO:0008213 13 0.056
regulation of anatomical structure morphogenesis GO:0022603 130 0.055
cell motility GO:0048870 244 0.055
inorganic cation transmembrane transport GO:0098662 50 0.053
regulation of metal ion transport GO:0010959 4 0.052
organic cyclic compound metabolic process GO:1901360 301 0.052
Worm
nucleotide metabolic process GO:0009117 28 0.051
Worm
epithelial cell proliferation involved in liver morphogenesis GO:0072575 2 0.048
positive regulation of catabolic process GO:0009896 4 0.046
modification dependent protein catabolic process GO:0019941 3 0.046
axonogenesis GO:0007409 152 0.045
digestive tract morphogenesis GO:0048546 231 0.044
cell substrate junction assembly GO:0007044 2 0.044
gtp metabolic process GO:0046039 4 0.043
mesenchyme development GO:0060485 127 0.043
negative regulation of chemotaxis GO:0050922 4 0.043
stem cell differentiation GO:0048863 117 0.043
taxis GO:0042330 109 0.042
single organism biosynthetic process GO:0044711 71 0.042
Worm
inner ear development GO:0048839 126 0.041
specification of symmetry GO:0009799 204 0.041
cellular response to stress GO:0033554 62 0.041
cellular localization GO:0051641 97 0.041
Worm
optic placode formation GO:0001743 4 0.040
chloride transmembrane transport GO:1902476 4 0.039
chemotaxis GO:0006935 104 0.039
collagen biosynthetic process GO:0032964 2 0.039
Worm
negative regulation of transmembrane receptor protein serine threonine kinase signaling pathway GO:0090101 22 0.039
regulation of nervous system development GO:0051960 90 0.039
nucleoside phosphate metabolic process GO:0006753 28 0.039
Worm
carboxylic acid metabolic process GO:0019752 22 0.038
regulation of cell projection assembly GO:0060491 4 0.038
regulation of cell proliferation involved in heart morphogenesis GO:2000136 2 0.038
cellular component biogenesis GO:0044085 178 0.037
Mouse
reflex GO:0060004 2 0.036
regulation of multicellular organismal development GO:2000026 223 0.035
positive regulation of transport GO:0051050 2 0.035
single organism organelle organization GO:1902589 199 0.034
mesenchymal cell development GO:0014031 78 0.034
collagen metabolic process GO:0032963 2 0.033
Worm
regulation of transmembrane receptor protein serine threonine kinase signaling pathway GO:0090092 50 0.033
anion transport GO:0006820 38 0.033
cytoskeleton organization GO:0007010 96 0.033
positive regulation of cellular amine metabolic process GO:0033240 0 0.033
positive regulation of metabolic process GO:0009893 108 0.033
establishment of localization in cell GO:0051649 77 0.033
Worm
embryonic pattern specification GO:0009880 44 0.032
cell migration involved in heart development GO:0060973 22 0.032
skeletal system development GO:0001501 181 0.032
regulation of filopodium assembly GO:0051489 2 0.031
embryo development ending in birth or egg hatching GO:0009792 271 0.031
Mouse Worm
cellular aromatic compound metabolic process GO:0006725 295 0.031
Worm
embryonic viscerocranium morphogenesis GO:0048703 52 0.031
gland development GO:0048732 143 0.031
cellular response to extracellular stimulus GO:0031668 2 0.031
muscle tissue development GO:0060537 110 0.031
actomyosin structure organization GO:0031032 53 0.030
long chain fatty acid metabolic process GO:0001676 1 0.030
immune system development GO:0002520 191 0.030
organism emergence from protective structure GO:0071684 4 0.030
cell cycle process GO:0022402 53 0.029
stem cell maintenance GO:0019827 4 0.029
epithelial cell differentiation GO:0030855 116 0.029
Mouse
organic acid metabolic process GO:0006082 31 0.029
embryonic appendage morphogenesis GO:0035113 30 0.028
negative regulation of signaling GO:0023057 96 0.028
regulation of programmed cell death GO:0043067 101 0.028
regulation of apoptotic process GO:0042981 98 0.028
proteolysis involved in cellular protein catabolic process GO:0051603 3 0.028
regeneration GO:0031099 91 0.028
regulation of dendrite development GO:0050773 3 0.028
macromolecule modification GO:0043412 111 0.027
Worm
regulation of signal transduction GO:0009966 225 0.027
regulation of developmental process GO:0050793 247 0.027
negative regulation of response to stimulus GO:0048585 104 0.026
sensory perception of light stimulus GO:0050953 19 0.026
lipid metabolic process GO:0006629 52 0.026
membrane repolarization GO:0086009 2 0.025
wound healing GO:0042060 90 0.025
vasculature development GO:0001944 278 0.024
protein heterooligomerization GO:0051291 1 0.024
motor neuron axon guidance GO:0008045 23 0.024
meiotic nuclear division GO:0007126 4 0.024
cell projection morphogenesis GO:0048858 244 0.024
regulation of membrane potential GO:0042391 23 0.024
golgi organization GO:0007030 1 0.024
establishment or maintenance of cell polarity GO:0007163 29 0.024
g1 s transition of mitotic cell cycle GO:0000082 1 0.024
metal ion transport GO:0030001 58 0.024
regulation of cell morphogenesis GO:0022604 42 0.024
phosphorus metabolic process GO:0006793 109 0.023
Worm
developmental cell growth GO:0048588 52 0.023
cellular macromolecule localization GO:0070727 21 0.023
regulation of nucleobase containing compound metabolic process GO:0019219 250 0.023
lipid homeostasis GO:0055088 3 0.023
neural crest cell development GO:0014032 62 0.023
growth GO:0040007 174 0.023
regulation of extent of cell growth GO:0061387 29 0.023
synaptic transmission GO:0007268 35 0.023
cellular response to nutrient levels GO:0031669 2 0.023
cellular protein metabolic process GO:0044267 129 0.023
Worm
internal protein amino acid acetylation GO:0006475 2 0.023
embryonic cranial skeleton morphogenesis GO:0048701 90 0.023
negative regulation of apoptotic process GO:0043066 55 0.023
positive regulation of gtp catabolic process GO:0033126 1 0.022
oxoacid metabolic process GO:0043436 31 0.022
cell death GO:0008219 121 0.022
cartilage development involved in endochondral bone morphogenesis GO:0060351 8 0.022
endochondral bone growth GO:0003416 2 0.022
digestive system development GO:0055123 289 0.022
regulation of nucleotide catabolic process GO:0030811 2 0.022
neuron projection extension GO:1990138 45 0.021
mitotic cell cycle GO:0000278 64 0.021
negative regulation of signal transduction GO:0009968 94 0.021
digestive tract development GO:0048565 265 0.021
positive regulation of purine nucleotide catabolic process GO:0033123 1 0.021
modification dependent macromolecule catabolic process GO:0043632 3 0.021
multicellular organism growth GO:0035264 4 0.021
cellular response to organic substance GO:0071310 105 0.020
regulation of neuron projection development GO:0010975 40 0.020
regulation of synapse assembly GO:0051963 3 0.020
synaptic transmission glycinergic GO:0060012 1 0.020
sensory perception GO:0007600 39 0.020
inner ear morphogenesis GO:0042472 63 0.019
response to endogenous stimulus GO:0009719 83 0.019
response to nutrient levels GO:0031667 10 0.019
skeletal system morphogenesis GO:0048705 102 0.019
apoptotic process GO:0006915 116 0.019
hatching GO:0035188 4 0.019
stem cell division GO:0017145 1 0.019
positive regulation of gtpase activity GO:0043547 1 0.019
cell surface receptor signaling pathway GO:0007166 325 0.018
calcium ion transmembrane transport GO:0070588 13 0.018
regulation of phosphate metabolic process GO:0019220 43 0.018
basement membrane organization GO:0071711 5 0.018
Mouse
response to amino acid GO:0043200 2 0.018
positive regulation of multicellular organismal process GO:0051240 52 0.018
protein metabolic process GO:0019538 183 0.018
Worm
regulation of cell projection organization GO:0031344 44 0.017
ossification GO:0001503 23 0.017
cell proliferation involved in heart morphogenesis GO:0061323 2 0.017
primary neural tube formation GO:0014020 1 0.017
regulation of gtpase activity GO:0043087 2 0.017
epidermal cell differentiation GO:0009913 36 0.017
phosphorylation GO:0016310 69 0.017
positive regulation of response to stimulus GO:0048584 80 0.017
reproductive process GO:0022414 40 0.016
cellular protein catabolic process GO:0044257 4 0.016
cell proliferation GO:0008283 80 0.016
skeletal muscle tissue development GO:0007519 67 0.016
positive regulation of signaling GO:0023056 56 0.016
anion transmembrane transport GO:0098656 12 0.016
fin development GO:0033333 77 0.016
Zebrafish
dna templated transcription elongation GO:0006354 3 0.015
cartilage condensation GO:0001502 3 0.015
positive regulation of molecular function GO:0044093 33 0.015
catabolic process GO:0009056 32 0.015
regulation of epithelial cell proliferation GO:0050678 3 0.015
notochord cell differentiation GO:0060034 18 0.015
cellular amino acid metabolic process GO:0006520 7 0.015
cellular nitrogen compound metabolic process GO:0034641 290 0.015
Worm
organonitrogen compound metabolic process GO:1901564 74 0.015
positive regulation of map kinase activity GO:0043406 3 0.014
response to external biotic stimulus GO:0043207 97 0.014
carboxylic acid catabolic process GO:0046395 3 0.014
hemostasis GO:0007599 13 0.014
regulation of nitrogen compound metabolic process GO:0051171 251 0.014
receptor mediated endocytosis GO:0006898 6 0.014
Worm
growth plate cartilage development GO:0003417 2 0.014
regulation of biosynthetic process GO:0009889 250 0.014
regulation of cell proliferation GO:0042127 37 0.014
positive regulation of locomotion GO:0040017 14 0.014
tube closure GO:0060606 1 0.014
phagocytosis GO:0006909 3 0.014
positive regulation of defense response GO:0031349 9 0.014
cartilage morphogenesis GO:0060536 13 0.014
alpha amino acid metabolic process GO:1901605 3 0.014
regulation of chromosome segregation GO:0051983 1 0.013
locomotory behavior GO:0007626 34 0.013
single organism reproductive process GO:0044702 40 0.013
regulation of nucleoside metabolic process GO:0009118 2 0.013
organic substance transport GO:0071702 58 0.013
carbohydrate derivative metabolic process GO:1901135 61 0.013
Worm
blood circulation GO:0008015 87 0.013
Mouse
apoptotic process involved in development GO:1902742 2 0.013
gastrulation GO:0007369 208 0.013
lipid localization GO:0010876 11 0.013
intracellular transport GO:0046907 32 0.013
protein destabilization GO:0031648 1 0.013
regulation of cellular protein catabolic process GO:1903362 1 0.013
purine containing compound metabolic process GO:0072521 29 0.013
inorganic anion transmembrane transport GO:0098661 10 0.013
otolith development GO:0048840 32 0.013
negative regulation of epithelial cell proliferation GO:0050680 1 0.013
developmental process involved in reproduction GO:0003006 27 0.013
positive regulation of cellular process GO:0048522 201 0.013
blood vessel development GO:0001568 246 0.012
axon extension GO:0048675 45 0.012
vestibular receptor cell differentiation GO:0060114 3 0.012
proteasome mediated ubiquitin dependent protein catabolic process GO:0043161 2 0.012
regulation of cellular macromolecule biosynthetic process GO:2000112 222 0.012
cell growth GO:0016049 57 0.012
regulation of molecular function GO:0065009 70 0.012
positive regulation of macromolecule biosynthetic process GO:0010557 59 0.012
fin morphogenesis GO:0033334 53 0.012
Zebrafish
regulation of protein modification process GO:0031399 29 0.012
somatic muscle development GO:0007525 4 0.012
positive regulation of synapse assembly GO:0051965 1 0.011
cellular biosynthetic process GO:0044249 286 0.011
Worm
positive regulation of nucleotide catabolic process GO:0030813 1 0.011
cell cycle g1 s phase transition GO:0044843 1 0.011
regulation of body fluid levels GO:0050878 16 0.011
regulation of primary metabolic process GO:0080090 311 0.011
programmed cell death GO:0012501 119 0.011
proteasomal protein catabolic process GO:0010498 2 0.011
negative regulation of cell communication GO:0010648 96 0.011
neural tube development GO:0021915 62 0.011
Mouse
negative regulation of developmental process GO:0051093 65 0.011
mesenchymal cell differentiation GO:0048762 87 0.011
anatomical structure homeostasis GO:0060249 36 0.011
positive regulation of peptidyl tyrosine phosphorylation GO:0050731 1 0.011
regulation of macromolecule metabolic process GO:0060255 317 0.011
membrane invagination GO:0010324 1 0.011
muscle cell migration GO:0014812 4 0.011
response to steroid hormone GO:0048545 35 0.011
appendage development GO:0048736 80 0.011
Zebrafish
chloride transport GO:0006821 8 0.010
regulation of transporter activity GO:0032409 2 0.010
post embryonic development GO:0009791 7 0.010
Worm
actin cytoskeleton organization GO:0030036 63 0.010
small molecule catabolic process GO:0044282 3 0.010
regulation of gtp catabolic process GO:0033124 2 0.010
regulation of ion transmembrane transporter activity GO:0032412 2 0.010
sprouting angiogenesis GO:0002040 53 0.010
hepatocyte proliferation GO:0072574 2 0.010
positive regulation of gene expression GO:0010628 71 0.010
methylation GO:0032259 22 0.010

plod3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.020
disease of metabolism DOID:0014667 0 0.013
inherited metabolic disorder DOID:655 0 0.013