Danio rerio

0 known processes

col11a1b

collagen type XI alpha-1b and collagen, type XI, alpha 1b

(Aliases: si:dkey-87l9.2)

col11a1b biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
embryonic cranial skeleton morphogenesis GO:0048701 90 0.523
cartilage morphogenesis GO:0060536 13 0.447
tube morphogenesis GO:0035239 349 0.429
digestive system development GO:0055123 289 0.344
ventricular cardiac muscle tissue morphogenesis GO:0055010 2 0.343
skeletal system development GO:0001501 181 0.339
embryo development ending in birth or egg hatching GO:0009792 271 0.324
embryonic organ development GO:0048568 381 0.301
muscle structure development GO:0061061 196 0.293
digestive tract morphogenesis GO:0048546 231 0.279
mesenchyme development GO:0060485 127 0.264
endoderm development GO:0007492 49 0.264
negative regulation of cellular process GO:0048523 283 0.257
cellular macromolecule metabolic process GO:0044260 391 0.251
cellular component movement GO:0006928 335 0.249
detection of mechanical stimulus involved in sensory perception GO:0050974 11 0.237
skeletal system morphogenesis GO:0048705 102 0.232
gastrulation GO:0007369 208 0.221
protein metabolic process GO:0019538 183 0.214
embryonic skeletal system morphogenesis GO:0048704 93 0.214
digestive tract development GO:0048565 265 0.213
ventricular cardiac muscle tissue development GO:0003229 3 0.176
embryonic organ morphogenesis GO:0048562 274 0.173
response to organic substance GO:0010033 153 0.165
regulation of multicellular organismal process GO:0051239 277 0.165
notochord development GO:0030903 54 0.160
collagen fibril organization GO:0030199 1 0.155
cell surface receptor signaling pathway GO:0007166 325 0.145
response to external stimulus GO:0009605 264 0.140
sensory organ development GO:0007423 393 0.137
endodermal cell differentiation GO:0035987 19 0.137
stem cell differentiation GO:0048863 117 0.135
embryonic skeletal system development GO:0048706 97 0.133
chordate embryonic development GO:0043009 271 0.133
neurological system process GO:0050877 62 0.131
lateral inhibition GO:0046331 1 0.126
striated muscle tissue development GO:0014706 110 0.125
convergent extension GO:0060026 118 0.118
cell motility GO:0048870 244 0.112
mesenchymal cell development GO:0014031 78 0.099
system process GO:0003008 185 0.096
multicellular organismal metabolic process GO:0044236 2 0.093
sensory organ morphogenesis GO:0090596 200 0.090
morphogenesis of an epithelium GO:0002009 333 0.089
collagen biosynthetic process GO:0032964 2 0.088
regulation of signal transduction GO:0009966 225 0.088
cellular component morphogenesis GO:0032989 336 0.087
inner ear development GO:0048839 126 0.086
negative regulation of sequestering of calcium ion GO:0051283 4 0.085
response to wounding GO:0009611 116 0.084
fin development GO:0033333 77 0.082
localization of cell GO:0051674 244 0.082
developmental growth GO:0048589 166 0.082
multicellular organismal macromolecule metabolic process GO:0044259 2 0.080
embryonic viscerocranium morphogenesis GO:0048703 52 0.073
neuron differentiation GO:0030182 353 0.073
regeneration GO:0031099 91 0.073
extracellular structure organization GO:0043062 27 0.071
regulation of embryonic development GO:0045995 47 0.071
formation of primary germ layer GO:0001704 62 0.071
fin regeneration GO:0031101 51 0.070
heart morphogenesis GO:0003007 156 0.069
growth GO:0040007 174 0.069
chondrocyte development GO:0002063 4 0.066
muscle tissue development GO:0060537 110 0.065
protein dephosphorylation GO:0006470 3 0.063
heart development GO:0007507 313 0.063
phosphorus metabolic process GO:0006793 109 0.057
nucleobase containing compound metabolic process GO:0006139 274 0.055
detection of mechanical stimulus involved in sensory perception of sound GO:0050910 3 0.054
response to stress GO:0006950 263 0.054
hemopoiesis GO:0030097 183 0.054
regulation of metabolic process GO:0019222 359 0.053
regulation of macromolecule metabolic process GO:0060255 317 0.052
embryonic limb morphogenesis GO:0030326 2 0.051
regulation of cellular metabolic process GO:0031323 320 0.051
phospholipase c activating g protein coupled receptor signaling pathway GO:0007200 2 0.051
cell migration GO:0016477 237 0.051
cell morphogenesis involved in differentiation GO:0000904 195 0.050
negative regulation of developmental process GO:0051093 65 0.050
ear development GO:0043583 127 0.048
negative regulation of biological process GO:0048519 304 0.048
regulation of cell communication GO:0010646 232 0.048
hematopoietic or lymphoid organ development GO:0048534 191 0.047
detection of abiotic stimulus GO:0009582 24 0.047
axon guidance GO:0007411 86 0.046
negative regulation of kinase activity GO:0033673 4 0.046
wound healing GO:0042060 90 0.044
cellular protein metabolic process GO:0044267 129 0.044
connective tissue development GO:0061448 99 0.043
muscle organ development GO:0007517 101 0.043
heterocycle biosynthetic process GO:0018130 215 0.043
signal transduction GO:0007165 455 0.043
biosynthetic process GO:0009058 294 0.043
regulation of developmental process GO:0050793 247 0.042
detection of stimulus involved in sensory perception GO:0050906 21 0.042
cardiac ventricle morphogenesis GO:0003208 7 0.042
locomotion GO:0040011 313 0.041
appendage morphogenesis GO:0035107 56 0.041
axonal defasciculation GO:0007414 2 0.041
cellular protein modification process GO:0006464 100 0.041
transcription from rna polymerase ii promoter GO:0006366 80 0.041
central nervous system development GO:0007417 387 0.041
detection of mechanical stimulus GO:0050982 11 0.040
cell substrate adhesion GO:0031589 4 0.040
regulation of stem cell differentiation GO:2000736 4 0.038
regulation of response to stimulus GO:0048583 269 0.037
cardiac muscle tissue morphogenesis GO:0055008 7 0.037
cellular response to external stimulus GO:0071496 2 0.036
regulation of signaling GO:0023051 235 0.036
regulation of cellular protein metabolic process GO:0032268 52 0.036
cellular amine metabolic process GO:0044106 2 0.036
tissue regeneration GO:0042246 74 0.036
larval development GO:0002164 2 0.036
eye development GO:0001654 277 0.036
regulation of collagen metabolic process GO:0010712 2 0.036
detection of stimulus GO:0051606 29 0.035
negative regulation of cell differentiation GO:0045596 46 0.034
appendage development GO:0048736 80 0.034
specification of symmetry GO:0009799 204 0.033
detection of external stimulus GO:0009581 24 0.033
glycoprotein metabolic process GO:0009100 23 0.033
response to mechanical stimulus GO:0009612 24 0.033
pectoral fin development GO:0033339 50 0.033
regionalization GO:0003002 274 0.033
response to carbohydrate GO:0009743 3 0.032
head development GO:0060322 303 0.032
erk1 and erk2 cascade GO:0070371 4 0.032
regulation of protein targeting GO:1903533 2 0.032
regulation of cytoplasmic transport GO:1903649 4 0.032
regulation of primary metabolic process GO:0080090 311 0.031
macromolecule biosynthetic process GO:0009059 227 0.031
cartilage condensation GO:0001502 3 0.031
rna metabolic process GO:0016070 219 0.031
negative regulation of protein phosphorylation GO:0001933 4 0.031
cell morphogenesis GO:0000902 289 0.031
generation of neurons GO:0048699 385 0.030
behavior GO:0007610 74 0.029
transmembrane receptor protein serine threonine kinase signaling pathway GO:0007178 68 0.029
macromolecule modification GO:0043412 111 0.029
retina development in camera type eye GO:0060041 146 0.029
epiboly GO:0090504 41 0.028
adult behavior GO:0030534 2 0.028
blood vessel development GO:0001568 246 0.028
protein phosphorylation GO:0006468 47 0.028
rna biosynthetic process GO:0032774 181 0.028
fin morphogenesis GO:0033334 53 0.028
positive regulation of stress activated mapk cascade GO:0032874 3 0.027
retina homeostasis GO:0001895 12 0.027
regulation of nucleic acid templated transcription GO:1903506 213 0.027
oxoacid metabolic process GO:0043436 31 0.027
heterocycle metabolic process GO:0046483 290 0.026
regulation of gene expression GO:0010468 265 0.026
camera type eye development GO:0043010 222 0.026
homeostatic process GO:0042592 142 0.026
sensory perception GO:0007600 39 0.026
regulation of endopeptidase activity GO:0052548 23 0.026
regulation of cellular amino acid metabolic process GO:0006521 0 0.025
organic cyclic compound biosynthetic process GO:1901362 223 0.025
regulation of protein localization to nucleus GO:1900180 2 0.024
carboxylic acid metabolic process GO:0019752 22 0.024
convergent extension involved in gastrulation GO:0060027 71 0.024
establishment of protein localization to organelle GO:0072594 4 0.024
phosphate containing compound metabolic process GO:0006796 108 0.024
organic acid metabolic process GO:0006082 31 0.023
cellular nitrogen compound metabolic process GO:0034641 290 0.022
eye morphogenesis GO:0048592 144 0.022
determination of bilateral symmetry GO:0009855 204 0.022
positive regulation of macromolecule metabolic process GO:0010604 93 0.022
positive regulation of metabolic process GO:0009893 108 0.022
cellular response to retinoic acid GO:0071300 1 0.022
taxis GO:0042330 109 0.022
cardiac muscle tissue development GO:0048738 48 0.021
cell projection assembly GO:0030031 64 0.021
cellular nitrogen compound biosynthetic process GO:0044271 218 0.021
cognition GO:0050890 1 0.021
bmp signaling pathway GO:0030509 52 0.021
angiogenesis GO:0001525 158 0.021
growth plate cartilage development GO:0003417 2 0.021
cell adhesion GO:0007155 40 0.021
cell cell signaling involved in cell fate commitment GO:0045168 12 0.021
nucleobase containing compound biosynthetic process GO:0034654 205 0.020
small molecule metabolic process GO:0044281 77 0.020
gtp catabolic process GO:0006184 2 0.020
regulation of multicellular organismal metabolic process GO:0044246 2 0.020
smooth muscle contraction GO:0006939 2 0.020
intracellular signal transduction GO:0035556 85 0.020
positive regulation of stress activated protein kinase signaling cascade GO:0070304 3 0.020
endochondral bone growth GO:0003416 2 0.020
positive regulation of jnk cascade GO:0046330 3 0.019
cell morphogenesis involved in neuron differentiation GO:0048667 163 0.019
macromolecular complex subunit organization GO:0043933 74 0.019
regulation of multicellular organismal development GO:2000026 223 0.019
morphogenesis of an epithelial sheet GO:0002011 49 0.019
regulation of transcription dna templated GO:0006355 213 0.019
regulation of protein catabolic process GO:0042176 1 0.019
regulation of kinase activity GO:0043549 15 0.019
protein targeting to nucleus GO:0044744 3 0.019
protein complex subunit organization GO:0071822 46 0.019
cell projection morphogenesis GO:0048858 244 0.019
blood circulation GO:0008015 87 0.018
sensory perception of mechanical stimulus GO:0050954 16 0.018
response to chemical GO:0042221 320 0.018
muscle organ morphogenesis GO:0048644 8 0.018
multicellular organism growth GO:0035264 4 0.018
positive regulation of map kinase activity GO:0043406 3 0.018
regulation of chondrocyte differentiation GO:0032330 1 0.018
regulation of cell activation GO:0050865 1 0.018
negative regulation of signal transduction GO:0009968 94 0.018
regulation of blood pressure GO:0008217 1 0.018
organic substance biosynthetic process GO:1901576 289 0.018
cellular response to growth factor stimulus GO:0071363 39 0.018
regulation of muscle contraction GO:0006937 3 0.017
cell aggregation GO:0098743 3 0.017
vasculature development GO:0001944 278 0.017
ear morphogenesis GO:0042471 64 0.017
positive regulation of small gtpase mediated signal transduction GO:0051057 1 0.017
regulation of glomerular filtration GO:0003093 1 0.017
positive regulation of cellular protein metabolic process GO:0032270 22 0.017
collagen metabolic process GO:0032963 2 0.017
regulation of biological quality GO:0065008 263 0.017
neural crest cell differentiation GO:0014033 72 0.017
negative regulation of protein kinase activity GO:0006469 4 0.017
regulation of cell substrate adhesion GO:0010810 1 0.017
cytosolic calcium ion transport GO:0060401 3 0.016
regulation of myotube differentiation GO:0010830 2 0.016
cell part morphogenesis GO:0032990 246 0.016
regulation of cellular amine metabolic process GO:0033238 0 0.016
cardiac ventricle development GO:0003231 9 0.016
organism emergence from protective structure GO:0071684 4 0.016
cellular macromolecule biosynthetic process GO:0034645 224 0.016
extracellular matrix organization GO:0030198 27 0.016
regulation of protein modification process GO:0031399 29 0.016
positive regulation of leukocyte migration GO:0002687 2 0.016
primary neural tube formation GO:0014020 1 0.016
immune system development GO:0002520 191 0.016
mesenchymal cell differentiation GO:0048762 87 0.015
transcription dna templated GO:0006351 181 0.015
urogenital system development GO:0001655 97 0.015
proteoglycan metabolic process GO:0006029 14 0.015
aromatic compound biosynthetic process GO:0019438 217 0.015
response to hormone GO:0009725 48 0.015
single organism cell adhesion GO:0098602 29 0.015
response to nutrient GO:0007584 3 0.015
negative regulation of dna metabolic process GO:0051053 4 0.015
negative regulation of signaling GO:0023057 96 0.015
positive regulation of protein metabolic process GO:0051247 23 0.015
nucleic acid templated transcription GO:0097659 181 0.015
negative regulation of nitrogen compound metabolic process GO:0051172 59 0.015
regulation of blood vessel size GO:0050880 2 0.015
regulation of phosphorylation GO:0042325 26 0.015
visual perception GO:0007601 17 0.015
developmental growth involved in morphogenesis GO:0060560 86 0.015
regulation of sequestering of calcium ion GO:0051282 4 0.015
epiboly involved in gastrulation with mouth forming second GO:0055113 35 0.014
nuclear import GO:0051170 3 0.014
positive regulation of transport GO:0051050 2 0.014
response to endogenous stimulus GO:0009719 83 0.014
regulation of protein metabolic process GO:0051246 56 0.014
renal system process involved in regulation of blood volume GO:0001977 1 0.014
cellular response to endogenous stimulus GO:0071495 68 0.014
symbiosis encompassing mutualism through parasitism GO:0044403 4 0.014
regulation of synapse organization GO:0050807 3 0.014
cardiac chamber morphogenesis GO:0003206 12 0.014
cell projection organization GO:0030030 284 0.014
phagocytosis GO:0006909 3 0.014
phosphorylation GO:0016310 69 0.014
interspecies interaction between organisms GO:0044419 4 0.014
regulation of tube size GO:0035150 2 0.014
negative regulation of macromolecule metabolic process GO:0010605 76 0.014
regulation of dna replication GO:0006275 3 0.014
immune system process GO:0002376 241 0.014
regulation of production of molecular mediator of immune response GO:0002700 1 0.013
protein import GO:0017038 3 0.013
determination of heart left right asymmetry GO:0061371 117 0.013
response to lipid GO:0033993 60 0.013
sensory perception of sound GO:0007605 9 0.013
regulation of wnt signaling pathway GO:0030111 53 0.013
cellular response to organic substance GO:0071310 105 0.013
protein import into nucleus GO:0006606 3 0.013
epithelial cell cell adhesion GO:0090136 1 0.013
cellular response to radiation GO:0071478 4 0.013
cell growth GO:0016049 57 0.013
regulation of phosphorus metabolic process GO:0051174 43 0.013
protein modification process GO:0036211 100 0.013
regulation of cell projection assembly GO:0060491 4 0.013
nucleic acid metabolic process GO:0090304 244 0.013
regulation of protein phosphorylation GO:0001932 18 0.013
wnt signaling pathway GO:0016055 80 0.013
regulation of biosynthetic process GO:0009889 250 0.013
regulation of cell migration GO:0030334 40 0.013
negative regulation of cell communication GO:0010648 96 0.013
g protein coupled receptor signaling pathway GO:0007186 74 0.013
regulation of hematopoietic stem cell differentiation GO:1902036 1 0.012
central nervous system neuron differentiation GO:0021953 74 0.012
axonogenesis GO:0007409 152 0.012
proteolysis involved in cellular protein catabolic process GO:0051603 3 0.012
negative regulation of response to stimulus GO:0048585 104 0.012
release of sequestered calcium ion into cytosol GO:0051209 3 0.012
inner ear morphogenesis GO:0042472 63 0.012
regulation of locomotion GO:0040012 55 0.012
ameboidal type cell migration GO:0001667 143 0.012
positive regulation of erk1 and erk2 cascade GO:0070374 2 0.012
muscle tissue morphogenesis GO:0060415 7 0.012
negative regulation of dna replication GO:0008156 2 0.012
negative regulation of extrinsic apoptotic signaling pathway GO:2001237 2 0.012
regulation of blood circulation GO:1903522 32 0.012
positive regulation of protein polymerization GO:0032273 2 0.012
negative regulation of protein serine threonine kinase activity GO:0071901 2 0.011
regulation of cytokine production GO:0001817 3 0.011
negative regulation of reproductive process GO:2000242 3 0.011
determination of left right symmetry GO:0007368 179 0.011
positive regulation of cell substrate adhesion GO:0010811 1 0.011
regulation of cellular component movement GO:0051270 55 0.011
negative regulation of transmembrane receptor protein serine threonine kinase signaling pathway GO:0090101 22 0.011
regulation of intracellular signal transduction GO:1902531 57 0.011
regulation of protein transport GO:0051223 3 0.011
positive regulation of cytosolic calcium ion concentration GO:0007204 4 0.011
cell chemotaxis GO:0060326 17 0.011
regulation of calcium ion transport GO:0051924 2 0.011
positive regulation of rho protein signal transduction GO:0035025 0 0.011
negative regulation of nucleobase containing compound metabolic process GO:0045934 59 0.011
regulation of nucleocytoplasmic transport GO:0046822 2 0.011
regulation of reproductive process GO:2000241 4 0.011
negative regulation of endodermal cell differentiation GO:1903225 8 0.011
regulation of molecular function GO:0065009 70 0.011
regulation of establishment of planar polarity GO:0090175 4 0.011
regulation of bmp signaling pathway GO:0030510 39 0.011
fibroblast growth factor receptor signaling pathway GO:0008543 22 0.011
exocytosis GO:0006887 1 0.011
cellular protein catabolic process GO:0044257 4 0.011
membrane invagination GO:0010324 1 0.011
regulation of transcription from rna polymerase ii promoter GO:0006357 114 0.011
organonitrogen compound metabolic process GO:1901564 74 0.011
negative regulation of axon extension involved in axon guidance GO:0048843 1 0.010
nucleocytoplasmic transport GO:0006913 4 0.010
embryonic skeletal joint development GO:0072498 3 0.010
cellular component assembly GO:0022607 170 0.010
cell fate specification GO:0001708 68 0.010
stem cell maintenance GO:0019827 4 0.010
regulation of fibroblast growth factor receptor signaling pathway GO:0040036 20 0.010
single organism localization GO:1902578 225 0.010
specification of organ identity GO:0010092 2 0.010
positive regulation of cellular process GO:0048522 201 0.010
regulation of cellular ketone metabolic process GO:0010565 7 0.010
transmembrane receptor protein tyrosine kinase signaling pathway GO:0007169 42 0.010
stem cell division GO:0017145 1 0.010
nuclear transport GO:0051169 4 0.010

col11a1b disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.084
musculoskeletal system disease DOID:17 0 0.048
muscular disease DOID:0080000 0 0.026
muscle tissue disease DOID:66 0 0.026
nervous system disease DOID:863 0 0.020
disease of metabolism DOID:0014667 0 0.018
immune system disease DOID:2914 0 0.017
cardiovascular system disease DOID:1287 0 0.014
cardiomyopathy DOID:0050700 0 0.014
intrinsic cardiomyopathy DOID:0060036 0 0.014
myopathy DOID:423 0 0.014
heart disease DOID:114 0 0.014
connective tissue disease DOID:65 0 0.012
inherited metabolic disorder DOID:655 0 0.012
bone development disease DOID:0080006 0 0.010
bone disease DOID:0080001 0 0.010