Danio rerio

0 known processes

lmo4b

LIM domain only 4b

(Aliases: lmo4l,fc45c09,wu:fc45c09)

lmo4b biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
regulation of nucleobase containing compound metabolic process GO:0019219 250 0.231
Mouse
signal transduction GO:0007165 455 0.144
camera type eye development GO:0043010 222 0.139
Zebrafish
nucleic acid metabolic process GO:0090304 244 0.138
Mouse
heterocycle biosynthetic process GO:0018130 215 0.122
Mouse
positive regulation of biological process GO:0048518 253 0.120
Mouse
establishment of localization GO:0051234 244 0.103
embryonic organ development GO:0048568 381 0.091
Zebrafish
response to ketone GO:1901654 1 0.088
negative regulation of nucleotide metabolic process GO:0045980 7 0.087
rna metabolic process GO:0016070 219 0.085
Mouse
organic substance biosynthetic process GO:1901576 289 0.084
Mouse
regulation of biosynthetic process GO:0009889 250 0.079
Mouse
positive regulation of cellular metabolic process GO:0031325 94 0.077
Mouse
transport GO:0006810 220 0.076
biosynthetic process GO:0009058 294 0.076
Mouse
purine nucleotide biosynthetic process GO:0006164 20 0.073
cellular macromolecule metabolic process GO:0044260 391 0.073
Mouse
response to chemical GO:0042221 320 0.070
phagocytosis GO:0006909 3 0.070
negative regulation of biological process GO:0048519 304 0.069
Mouse
immune system process GO:0002376 241 0.068
Mouse
nucleobase containing compound biosynthetic process GO:0034654 205 0.067
Mouse
central nervous system development GO:0007417 387 0.064
Zebrafish Mouse
cellular response to lipid GO:0071396 39 0.063
response to nutrient GO:0007584 3 0.061
aromatic compound biosynthetic process GO:0019438 217 0.060
Mouse
regulation of cellular macromolecule biosynthetic process GO:2000112 222 0.057
Mouse
regulation of response to stimulus GO:0048583 269 0.057
regulation of biological quality GO:0065008 263 0.054
cellular nitrogen compound metabolic process GO:0034641 290 0.054
Mouse
morphogenesis of an epithelium GO:0002009 333 0.052
Mouse
nucleobase containing compound metabolic process GO:0006139 274 0.052
Mouse
organic cyclic compound metabolic process GO:1901360 301 0.051
Mouse
regulation of nitrogen compound metabolic process GO:0051171 251 0.051
Mouse
regulation of multicellular organism growth GO:0040014 4 0.050
cellular nitrogen compound biosynthetic process GO:0044271 218 0.050
Mouse
sensory system development GO:0048880 76 0.049
gene expression GO:0010467 252 0.049
Mouse
sequestering of calcium ion GO:0051208 3 0.049
camera type eye morphogenesis GO:0048593 108 0.048
eye development GO:0001654 277 0.048
Zebrafish
tube closure GO:0060606 1 0.047
Mouse
brain development GO:0007420 293 0.047
Zebrafish
gastrulation GO:0007369 208 0.047
chordate embryonic development GO:0043009 271 0.046
Mouse
cellular ketone metabolic process GO:0042180 11 0.045
ribose phosphate biosynthetic process GO:0046390 20 0.044
response to organic substance GO:0010033 153 0.043
signal transduction in absence of ligand GO:0038034 1 0.043
central nervous system myelination GO:0022010 2 0.043
regulation of rna metabolic process GO:0051252 224 0.043
Mouse
developmental growth GO:0048589 166 0.043
positive regulation of developmental process GO:0051094 50 0.042
ribonucleotide biosynthetic process GO:0009260 20 0.040
cellular response to organic substance GO:0071310 105 0.039
regulation of cellular biosynthetic process GO:0031326 245 0.038
Mouse
regulation of signaling GO:0023051 235 0.037
epithelial tube morphogenesis GO:0060562 148 0.037
Mouse
regulation of nucleic acid templated transcription GO:1903506 213 0.035
Mouse
positive regulation of canonical wnt signaling pathway GO:0090263 4 0.035
response to endogenous stimulus GO:0009719 83 0.035
nucleotide biosynthetic process GO:0009165 21 0.034
startle response GO:0001964 4 0.034
establishment of protein localization to organelle GO:0072594 4 0.033
neural tube development GO:0021915 62 0.033
Mouse
primary neural tube formation GO:0014020 1 0.033
Mouse
regulation of developmental process GO:0050793 247 0.033
Mouse
sensory organ development GO:0007423 393 0.032
Zebrafish
organic acid metabolic process GO:0006082 31 0.031
head development GO:0060322 303 0.031
Zebrafish
regulation of protein modification by small protein conjugation or removal GO:1903320 3 0.031
positive regulation of cellular process GO:0048522 201 0.031
Mouse
regulation of protein ubiquitination GO:0031396 3 0.030
isoprenoid metabolic process GO:0006720 15 0.030
response to hormone GO:0009725 48 0.030
regulation of localization GO:0032879 104 0.030
establishment or maintenance of cell polarity GO:0007163 29 0.030
cellular aromatic compound metabolic process GO:0006725 295 0.029
Mouse
fertilization GO:0009566 3 0.029
embryonic skeletal system development GO:0048706 97 0.029
ameboidal type cell migration GO:0001667 143 0.028
purine containing compound biosynthetic process GO:0072522 20 0.028
regulation of filopodium assembly GO:0051489 2 0.028
regulation of cell differentiation GO:0045595 142 0.028
Mouse
response to organic cyclic compound GO:0014070 51 0.028
negative chemotaxis GO:0050919 1 0.028
response to lipid GO:0033993 60 0.027
extrinsic apoptotic signaling pathway in absence of ligand GO:0097192 1 0.027
cellular response to chemical stimulus GO:0070887 157 0.027
cell cycle GO:0007049 93 0.026
embryonic eye morphogenesis GO:0048048 30 0.026
regulation of macromolecule metabolic process GO:0060255 317 0.026
Mouse
regulation of transcription dna templated GO:0006355 213 0.026
Mouse
positive regulation of secretion by cell GO:1903532 1 0.026
response to glucocorticoid GO:0051384 1 0.025
terpenoid metabolic process GO:0006721 15 0.025
diterpenoid metabolic process GO:0016101 15 0.025
embryonic camera type eye development GO:0031076 29 0.025
Zebrafish
eye morphogenesis GO:0048592 144 0.024
regulation of inflammatory response GO:0050727 2 0.024
regulation of dendrite development GO:0050773 3 0.024
rna biosynthetic process GO:0032774 181 0.024
Mouse
homeostatic process GO:0042592 142 0.024
cellular macromolecule biosynthetic process GO:0034645 224 0.024
Mouse
protein targeting to membrane GO:0006612 1 0.024
response to acid chemical GO:0001101 17 0.024
regulation of stem cell proliferation GO:0072091 2 0.024
regulation of cellular ketone metabolic process GO:0010565 7 0.023
regulation of signal transduction GO:0009966 225 0.023
regulation of extrinsic apoptotic signaling pathway GO:2001236 3 0.023
forebrain regionalization GO:0021871 4 0.023
small molecule metabolic process GO:0044281 77 0.023
nucleic acid templated transcription GO:0097659 181 0.023
Mouse
positive regulation of cell cycle GO:0045787 3 0.023
regulation of transcription from rna polymerase iii promoter GO:0006359 1 0.023
carboxylic acid metabolic process GO:0019752 22 0.023
outflow tract morphogenesis GO:0003151 1 0.023
regulation of cell motility GO:2000145 46 0.023
positive regulation of secretion GO:0051047 1 0.022
regulation of circadian rhythm GO:0042752 4 0.022
nuclear migration GO:0007097 3 0.022
larval development GO:0002164 2 0.022
negative regulation of chemotaxis GO:0050922 4 0.022
cellular response to retinoic acid GO:0071300 1 0.021
lateral line system development GO:0048925 76 0.021
diterpenoid biosynthetic process GO:0016102 7 0.021
response to corticosteroid GO:0031960 1 0.021
regulation of protein transport GO:0051223 3 0.020
extrinsic apoptotic signaling pathway GO:0097191 3 0.020
negative regulation of sequestering of calcium ion GO:0051283 4 0.020
single fertilization GO:0007338 3 0.020
single organism transport GO:0044765 206 0.020
positive regulation of transport GO:0051050 2 0.020
regulation of nucleocytoplasmic transport GO:0046822 2 0.020
synaptic target recognition GO:0008039 1 0.020
photoreceptor cell differentiation GO:0046530 55 0.020
hepaticobiliary system development GO:0061008 98 0.020
tube morphogenesis GO:0035239 349 0.019
Mouse
mesenchymal cell differentiation GO:0048762 87 0.019
response to amino acid GO:0043200 2 0.019
regulation of cytoplasmic transport GO:1903649 4 0.019
immune system development GO:0002520 191 0.019
Mouse
protein stabilization GO:0050821 2 0.019
single organism metabolic process GO:0044710 217 0.019
macromolecule biosynthetic process GO:0009059 227 0.019
Mouse
embryonic skeletal system morphogenesis GO:0048704 93 0.019
maintenance of location GO:0051235 4 0.018
cellular biosynthetic process GO:0044249 286 0.018
Mouse
regulation of cell projection assembly GO:0060491 4 0.018
paraxial mesoderm development GO:0048339 8 0.018
compound eye development GO:0048749 2 0.018
enzyme linked receptor protein signaling pathway GO:0007167 106 0.018
eye photoreceptor cell differentiation GO:0001754 45 0.018
generation of neurons GO:0048699 385 0.018
Mouse
intracellular estrogen receptor signaling pathway GO:0030520 3 0.018
modification dependent macromolecule catabolic process GO:0043632 3 0.018
regulation of wnt signaling pathway GO:0030111 53 0.018
regulation of cell size GO:0008361 29 0.018
canonical wnt signaling pathway GO:0060070 48 0.017
regulation of multicellular organismal process GO:0051239 277 0.017
retinoic acid metabolic process GO:0042573 9 0.017
multicellular organism growth GO:0035264 4 0.017
apoptotic process GO:0006915 116 0.017
positive regulation of cell adhesion GO:0045785 1 0.017
heart looping GO:0001947 94 0.017
positive regulation of cellular component movement GO:0051272 11 0.017
protein localization to nucleus GO:0034504 3 0.017
digestive system development GO:0055123 289 0.017
neuron development GO:0048666 262 0.017
organism emergence from protective structure GO:0071684 4 0.017
regulation of skeletal muscle tissue development GO:0048641 4 0.017
single organism localization GO:1902578 225 0.017
regulation of cellular amine metabolic process GO:0033238 0 0.017
lateral line development GO:0048882 66 0.016
nephron epithelium morphogenesis GO:0072088 1 0.016
cellular hormone metabolic process GO:0034754 19 0.016
regulation of stem cell differentiation GO:2000736 4 0.016
specification of symmetry GO:0009799 204 0.016
negative regulation of multicellular organismal process GO:0051241 69 0.016
transcription dna templated GO:0006351 181 0.016
Mouse
retinoid metabolic process GO:0001523 15 0.016
cellular component movement GO:0006928 335 0.016
single organism biosynthetic process GO:0044711 71 0.016
connective tissue development GO:0061448 99 0.016
response to vitamin GO:0033273 3 0.016
regulation of cellular metabolic process GO:0031323 320 0.016
Mouse
embryonic organ morphogenesis GO:0048562 274 0.016
liver development GO:0001889 96 0.016
stem cell proliferation GO:0072089 4 0.016
ventricular cardiac muscle tissue development GO:0003229 3 0.016
regulation of oligodendrocyte differentiation GO:0048713 1 0.015
amine metabolic process GO:0009308 2 0.015
embryonic camera type eye morphogenesis GO:0048596 19 0.015
cell surface receptor signaling pathway GO:0007166 325 0.015
phagocytosis engulfment GO:0006911 1 0.015
neural crest cell development GO:0014032 62 0.015
heart development GO:0007507 313 0.015
Mouse
endosomal transport GO:0016197 2 0.015
establishment of localization in cell GO:0051649 77 0.015
regulation of metal ion transport GO:0010959 4 0.015
cell cycle g1 s phase transition GO:0044843 1 0.015
sensory organ morphogenesis GO:0090596 200 0.015
mesoderm development GO:0007498 88 0.015
cellular response to hormone stimulus GO:0032870 39 0.015
female gonad development GO:0008585 4 0.015
digestive tract morphogenesis GO:0048546 231 0.015
female sex differentiation GO:0046660 4 0.015
skeletal system development GO:0001501 181 0.015
regulation of establishment of protein localization GO:0070201 4 0.015
rhythmic process GO:0048511 21 0.015
skeletal muscle organ development GO:0060538 78 0.015
sequestering of metal ion GO:0051238 3 0.015
determination of left right symmetry GO:0007368 179 0.015
mitotic cell cycle GO:0000278 64 0.014
cardiac cell fate commitment GO:0060911 1 0.014
cellular amine metabolic process GO:0044106 2 0.014
regulation of cell development GO:0060284 100 0.014
entrainment of circadian clock GO:0009649 2 0.014
regulation of purine nucleotide biosynthetic process GO:1900371 15 0.014
regulation of extrinsic apoptotic signaling pathway in absence of ligand GO:2001239 1 0.014
cytoskeleton organization GO:0007010 96 0.014
ectodermal placode formation GO:0060788 26 0.014
embryonic limb morphogenesis GO:0030326 2 0.014
inositol lipid mediated signaling GO:0048017 2 0.014
mesenchymal cell development GO:0014031 78 0.014
ion transmembrane transport GO:0034220 91 0.014
purine ribonucleotide biosynthetic process GO:0009152 20 0.014
negative regulation of metabolic process GO:0009892 86 0.014
regulation of cell activation GO:0050865 1 0.014
Mouse
cellular protein metabolic process GO:0044267 129 0.014
determination of bilateral symmetry GO:0009855 204 0.014
digestive tract development GO:0048565 265 0.014
regulation of skeletal muscle fiber development GO:0048742 2 0.014
ear development GO:0043583 127 0.014
heterocycle metabolic process GO:0046483 290 0.014
Mouse
positive regulation of gene expression GO:0010628 71 0.014
Mouse
transmission of nerve impulse GO:0019226 19 0.013
negative regulation of cytoplasmic transport GO:1903650 2 0.013
positive regulation of nitrogen compound metabolic process GO:0051173 69 0.013
Mouse
regulation of hormone secretion GO:0046883 2 0.013
regulation of cellular component movement GO:0051270 55 0.013
skeletal system morphogenesis GO:0048705 102 0.013
system process GO:0003008 185 0.013
negative regulation of nitrogen compound metabolic process GO:0051172 59 0.013
appendage development GO:0048736 80 0.013
protein localization GO:0008104 40 0.013
myeloid cell homeostasis GO:0002262 56 0.013
vitamin metabolic process GO:0006766 11 0.013
protein import GO:0017038 3 0.013
fat soluble vitamin metabolic process GO:0006775 4 0.013
embryonic hemopoiesis GO:0035162 53 0.013
regulation of cyclic nucleotide biosynthetic process GO:0030802 15 0.013
proteolysis GO:0006508 38 0.013
negative regulation of cellular metabolic process GO:0031324 77 0.013
lipid storage GO:0019915 1 0.013
establishment of organelle localization GO:0051656 45 0.013
hindbrain development GO:0030902 91 0.013
membrane invagination GO:0010324 1 0.013
regulation of primary metabolic process GO:0080090 311 0.013
Mouse
hematopoietic or lymphoid organ development GO:0048534 191 0.013
Mouse
regulation of cell shape GO:0008360 1 0.012
positive regulation of stem cell proliferation GO:2000648 1 0.012
limb bud formation GO:0060174 2 0.012
hemopoiesis GO:0030097 183 0.012
common bile duct development GO:0061009 13 0.012
organic substance transport GO:0071702 58 0.012
negative regulation of muscle tissue development GO:1901862 2 0.012
segmentation GO:0035282 97 0.012
cellular response to oxygen levels GO:0071453 1 0.012
axon ensheathment in central nervous system GO:0032291 2 0.012
proteolysis involved in cellular protein catabolic process GO:0051603 3 0.012
positive regulation of histone modification GO:0031058 1 0.012
positive regulation of metabolic process GO:0009893 108 0.012
Mouse
ear morphogenesis GO:0042471 64 0.012
mucopolysaccharide metabolic process GO:1903510 2 0.012
hypothalamus cell differentiation GO:0021979 4 0.012
glial cell development GO:0021782 20 0.012
response to oxygen containing compound GO:1901700 55 0.012
gland development GO:0048732 143 0.012
Mouse
regulation of chondrocyte differentiation GO:0032330 1 0.011
response to alkaloid GO:0043279 2 0.011
renal system development GO:0072001 94 0.011
regulation of sequestering of calcium ion GO:0051282 4 0.011
positive regulation of cellular component biogenesis GO:0044089 3 0.011
kupffer s vesicle development GO:0070121 50 0.011
locomotor rhythm GO:0045475 3 0.011
regulation of cell matrix adhesion GO:0001952 1 0.011
negative regulation of catalytic activity GO:0043086 21 0.011
protein localization to plasma membrane GO:0072659 1 0.011
erythrocyte homeostasis GO:0034101 55 0.011
dorsal ventral pattern formation GO:0009953 125 0.011
epithelial to mesenchymal transition GO:0001837 21 0.011
macromolecule modification GO:0043412 111 0.011
cellular response to growth factor stimulus GO:0071363 39 0.011
homophilic cell adhesion via plasma membrane adhesion molecules GO:0007156 4 0.011
retina morphogenesis in camera type eye GO:0060042 79 0.011
regulation of intracellular ph GO:0051453 1 0.011
cyclic nucleotide biosynthetic process GO:0009190 18 0.011
regulation of neuron differentiation GO:0045664 56 0.011
regulation of cellular amino acid metabolic process GO:0006521 0 0.011
negative regulation of muscle cell differentiation GO:0051148 1 0.010
positive regulation of cellular amine metabolic process GO:0033240 0 0.010
determination of heart left right asymmetry GO:0061371 117 0.010
regulation of neuron projection development GO:0010975 40 0.010
intracellular signal transduction GO:0035556 85 0.010
regulation of bmp signaling pathway GO:0030510 39 0.010
positive regulation of cellular catabolic process GO:0031331 3 0.010
locomotion GO:0040011 313 0.010
growth GO:0040007 174 0.010
negative regulation of intracellular protein transport GO:0090317 3 0.010
regulation of intracellular protein transport GO:0033157 3 0.010
phosphatidylinositol 3 kinase signaling GO:0014065 2 0.010
cell matrix adhesion GO:0007160 4 0.010
regulation of intracellular signal transduction GO:1902531 57 0.010
muscle organ development GO:0007517 101 0.010
myeloid cell differentiation GO:0030099 86 0.010
cellular response to oxygen containing compound GO:1901701 20 0.010
regulation of biomineral tissue development GO:0070167 2 0.010

lmo4b disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.024
nervous system disease DOID:863 0 0.024
sensory system disease DOID:0050155 0 0.012