Danio rerio

0 known processes

lsm1

LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)

(Aliases: zgc:101136)

lsm1 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
larval development GO:0002164 2 0.381
Worm
regulation of meiotic cell cycle GO:0051445 1 0.107
positive regulation of biological process GO:0048518 253 0.095
nucleobase containing compound metabolic process GO:0006139 274 0.094
nuclear transport GO:0051169 4 0.094
embryo development ending in birth or egg hatching GO:0009792 271 0.087
Worm
positive regulation of cellular catabolic process GO:0031331 3 0.080
aging GO:0007568 2 0.075
cellular macromolecule metabolic process GO:0044260 391 0.074
positive regulation of cell cycle GO:0045787 3 0.073
regulation of nucleic acid templated transcription GO:1903506 213 0.071
single organism metabolic process GO:0044710 217 0.070
nitrogen compound metabolic process GO:0006807 319 0.063
cellular macromolecule biosynthetic process GO:0034645 224 0.058
negative regulation of biological process GO:0048519 304 0.057
macromolecule biosynthetic process GO:0009059 227 0.053
negative regulation of mapk cascade GO:0043409 4 0.051
regulation of protein modification by small protein conjugation or removal GO:1903320 3 0.050
regulation of metabolic process GO:0019222 359 0.050
organic cyclic compound biosynthetic process GO:1901362 223 0.050
g2 m transition of mitotic cell cycle GO:0000086 4 0.049
cellular aromatic compound metabolic process GO:0006725 295 0.048
negative regulation of sequence specific dna binding transcription factor activity GO:0043433 2 0.047
protein targeting to nucleus GO:0044744 3 0.047
regulation of macromolecule metabolic process GO:0060255 317 0.046
regulation of protein import into nucleus GO:0042306 2 0.046
aromatic compound biosynthetic process GO:0019438 217 0.044
nucleic acid templated transcription GO:0097659 181 0.044
cellular nitrogen compound metabolic process GO:0034641 290 0.044
positive regulation of catabolic process GO:0009896 4 0.043
regulation of gene expression GO:0010468 265 0.043
intracellular signal transduction GO:0035556 85 0.043
generation of neurons GO:0048699 385 0.042
regulation of catalytic activity GO:0050790 55 0.042
organic cyclic compound metabolic process GO:1901360 301 0.041
regulation of protein ubiquitination GO:0031396 3 0.041
negative regulation of cellular process GO:0048523 283 0.040
establishment of localization GO:0051234 244 0.040
proteasome mediated ubiquitin dependent protein catabolic process GO:0043161 2 0.040
nucleic acid metabolic process GO:0090304 244 0.039
regulation of rna metabolic process GO:0051252 224 0.039
meiotic nuclear division GO:0007126 4 0.037
establishment of protein localization to organelle GO:0072594 4 0.036
cell morphogenesis GO:0000902 289 0.036
double strand break repair via homologous recombination GO:0000724 1 0.035
protein metabolic process GO:0019538 183 0.035
neuron development GO:0048666 262 0.034
maintenance of location GO:0051235 4 0.034
negative regulation of protein import into nucleus GO:0042308 2 0.034
regulation of signaling GO:0023051 235 0.034
regulation of purine nucleotide catabolic process GO:0033121 2 0.034
regulation of nucleobase containing compound metabolic process GO:0019219 250 0.034
nucleocytoplasmic transport GO:0006913 4 0.032
single organism nuclear import GO:1902593 3 0.032
positive regulation of cellular process GO:0048522 201 0.032
regulation of nitrogen compound metabolic process GO:0051171 251 0.031
negative regulation of protein transport GO:0051224 3 0.031
peptide transport GO:0015833 1 0.031
regulation of nucleotide catabolic process GO:0030811 2 0.031
protein import into nucleus GO:0006606 3 0.031
adult behavior GO:0030534 2 0.031
regulation of cell cycle GO:0051726 52 0.031
phosphorus metabolic process GO:0006793 109 0.031
cell cycle g2 m phase transition GO:0044839 4 0.030
cell projection morphogenesis GO:0048858 244 0.030
gtp metabolic process GO:0046039 4 0.030
organelle organization GO:0006996 227 0.030
cellular carbohydrate metabolic process GO:0044262 4 0.029
negative regulation of protein localization to nucleus GO:1900181 2 0.029
signal transduction GO:0007165 455 0.029
regulation of signal transduction GO:0009966 225 0.029
regulation of cytoplasmic transport GO:1903649 4 0.029
sensory organ development GO:0007423 393 0.029
regulation of response to stimulus GO:0048583 269 0.029
rna biosynthetic process GO:0032774 181 0.029
regulation of primary metabolic process GO:0080090 311 0.028
protein localization to nucleus GO:0034504 3 0.028
regulation of nucleocytoplasmic transport GO:0046822 2 0.028
cellular amino acid metabolic process GO:0006520 7 0.027
response to stress GO:0006950 263 0.027
macromolecule modification GO:0043412 111 0.027
locomotion GO:0040011 313 0.027
regulation of cellular amine metabolic process GO:0033238 0 0.027
neuron differentiation GO:0030182 353 0.026
regulation of nucleoside metabolic process GO:0009118 2 0.026
macromolecular complex assembly GO:0065003 35 0.026
negative regulation of cytoplasmic transport GO:1903650 2 0.026
guanosine containing compound metabolic process GO:1901068 4 0.026
protein complex localization GO:0031503 1 0.026
biosynthetic process GO:0009058 294 0.026
negative regulation of nucleocytoplasmic transport GO:0046823 2 0.026
response to monosaccharide GO:0034284 3 0.025
eye development GO:0001654 277 0.025
cellular nitrogen compound biosynthetic process GO:0044271 218 0.025
cell death GO:0008219 121 0.025
regulation of cell communication GO:0010646 232 0.025
negative regulation of intracellular protein transport GO:0090317 3 0.025
regulation of cellular amino acid metabolic process GO:0006521 0 0.025
mitochondrion organization GO:0007005 4 0.024
regulation of protein targeting GO:1903533 2 0.024
synaptic vesicle localization GO:0097479 1 0.024
death GO:0016265 121 0.024
cellular component disassembly GO:0022411 1 0.024
positive regulation of nucleoside metabolic process GO:0045979 1 0.024
regulation of protein catabolic process GO:0042176 1 0.024
synaptic vesicle transport GO:0048489 1 0.024
small molecule metabolic process GO:0044281 77 0.024
autophagy GO:0006914 4 0.023
protein import GO:0017038 3 0.023
cell projection organization GO:0030030 284 0.023
transcription dna templated GO:0006351 181 0.023
transport GO:0006810 220 0.023
phosphate containing compound metabolic process GO:0006796 108 0.023
i kappab kinase nf kappab signaling GO:0007249 4 0.022
negative regulation of macromolecule metabolic process GO:0010605 76 0.022
purine nucleoside monophosphate catabolic process GO:0009128 4 0.022
positive regulation of metabolic process GO:0009893 108 0.022
protein localization to plasma membrane GO:0072659 1 0.022
response to carbohydrate GO:0009743 3 0.022
programmed cell death GO:0012501 119 0.022
regulation of cellular metabolic process GO:0031323 320 0.022
rna metabolic process GO:0016070 219 0.022
establishment of synaptic vesicle localization GO:0097480 1 0.022
nuclear export GO:0051168 1 0.021
purine ribonucleoside monophosphate catabolic process GO:0009169 4 0.021
cellular amine metabolic process GO:0044106 2 0.021
cellular biosynthetic process GO:0044249 286 0.021
negative regulation of intracellular transport GO:0032387 3 0.021
carbohydrate homeostasis GO:0033500 1 0.021
response to glucose GO:0009749 3 0.021
regulation of molecular function GO:0065009 70 0.021
mitotic dna integrity checkpoint GO:0044774 4 0.021
gtp catabolic process GO:0006184 2 0.021
internal protein amino acid acetylation GO:0006475 2 0.021
multicellular organism reproduction GO:0032504 35 0.021
regulation of i kappab kinase nf kappab signaling GO:0043122 4 0.021
heterocycle biosynthetic process GO:0018130 215 0.021
multi organism process GO:0051704 134 0.020
guanosine containing compound catabolic process GO:1901069 2 0.020
cellular ketone metabolic process GO:0042180 11 0.020
cell cycle g1 s phase transition GO:0044843 1 0.020
cellular component morphogenesis GO:0032989 336 0.020
regulation of establishment of protein localization GO:0070201 4 0.019
signal transduction by p53 class mediator GO:0072331 13 0.019
regulation of cellular carbohydrate metabolic process GO:0010675 4 0.019
regulation of extrinsic apoptotic signaling pathway GO:2001236 3 0.019
regulation of cellular biosynthetic process GO:0031326 245 0.019
homeostatic process GO:0042592 142 0.019
lipid homeostasis GO:0055088 3 0.019
axon development GO:0061564 166 0.019
positive regulation of purine nucleotide catabolic process GO:0033123 1 0.019
regulation of biological quality GO:0065008 263 0.019
microtubule based process GO:0007017 60 0.019
protein dephosphorylation GO:0006470 3 0.019
regulation of cellular component organization GO:0051128 86 0.018
cellular response to dna damage stimulus GO:0006974 24 0.018
cellular protein metabolic process GO:0044267 129 0.018
organic substance biosynthetic process GO:1901576 289 0.018
positive regulation of nucleotide catabolic process GO:0030813 1 0.018
regulation of intracellular protein transport GO:0033157 3 0.018
cell cycle arrest GO:0007050 1 0.018
axonogenesis GO:0007409 152 0.018
cellular component movement GO:0006928 335 0.018
energy reserve metabolic process GO:0006112 2 0.018
microtubule organizing center organization GO:0031023 1 0.017
glucose homeostasis GO:0042593 1 0.017
gene expression GO:0010467 252 0.017
regulation of organelle organization GO:0033043 29 0.017
cell cycle GO:0007049 93 0.017
nucleoside monophosphate catabolic process GO:0009125 4 0.017
atp catabolic process GO:0006200 4 0.017
apoptotic process GO:0006915 116 0.017
nucleobase containing compound biosynthetic process GO:0034654 205 0.017
g1 s transition of mitotic cell cycle GO:0000082 1 0.017
regulation of macromolecule biosynthetic process GO:0010556 225 0.016
regulation of transcription dna templated GO:0006355 213 0.016
organonitrogen compound metabolic process GO:1901564 74 0.016
cell part morphogenesis GO:0032990 246 0.016
oxoacid metabolic process GO:0043436 31 0.016
cellular response to chemical stimulus GO:0070887 157 0.016
small gtpase mediated signal transduction GO:0007264 8 0.016
neurological system process GO:0050877 62 0.016
amine metabolic process GO:0009308 2 0.016
peptidyl lysine acetylation GO:0018394 2 0.016
cell proliferation GO:0008283 80 0.016
regulation of protein metabolic process GO:0051246 56 0.016
ribonucleoside monophosphate catabolic process GO:0009158 4 0.016
cell morphogenesis involved in differentiation GO:0000904 195 0.016
cellular response to extracellular stimulus GO:0031668 2 0.016
protein acetylation GO:0006473 2 0.016
mitotic dna damage checkpoint GO:0044773 4 0.016
extrinsic apoptotic signaling pathway GO:0097191 3 0.016
angiogenesis GO:0001525 158 0.015
regulation of chromosome segregation GO:0051983 1 0.015
alcohol biosynthetic process GO:0046165 2 0.015
regulation of rna biosynthetic process GO:2001141 213 0.015
positive regulation of cellular amino acid metabolic process GO:0045764 0 0.015
negative regulation of cellular component organization GO:0051129 16 0.015
cellular response to external stimulus GO:0071496 2 0.015
regulation of ion transmembrane transporter activity GO:0032412 2 0.015
peptidyl serine modification GO:0018209 2 0.015
regulation of cell cycle process GO:0010564 20 0.015
regulation of dna templated transcription in response to stress GO:0043620 0 0.015
recombinational repair GO:0000725 1 0.015
nucleic acid transport GO:0050657 2 0.015
negative regulation of metabolic process GO:0009892 86 0.015
neuron projection development GO:0031175 180 0.015
compound eye development GO:0048749 2 0.015
protein acylation GO:0043543 3 0.015
mrna metabolic process GO:0016071 20 0.014
phosphorylation GO:0016310 69 0.014
cellular response to oxygen levels GO:0071453 1 0.014
regulation of proteolysis involved in cellular protein catabolic process GO:1903050 1 0.014
modification dependent protein catabolic process GO:0019941 3 0.014
negative regulation of nucleic acid templated transcription GO:1903507 45 0.014
carboxylic acid metabolic process GO:0019752 22 0.014
organic acid metabolic process GO:0006082 31 0.014
neuron neuron synaptic transmission GO:0007270 1 0.014
regionalization GO:0003002 274 0.014
negative regulation of cellular macromolecule biosynthetic process GO:2000113 48 0.014
neuron projection morphogenesis GO:0048812 161 0.014
regulation of phosphorus metabolic process GO:0051174 43 0.014
regulation of carbohydrate metabolic process GO:0006109 4 0.014
establishment of protein localization to plasma membrane GO:0090002 1 0.014
reproduction GO:0000003 40 0.014
negative regulation of i kappab kinase nf kappab signaling GO:0043124 1 0.014
pronuclear migration GO:0035046 1 0.014
regulation of cellular ketone metabolic process GO:0010565 7 0.014
dorsal ventral pattern formation GO:0009953 125 0.014
single fertilization GO:0007338 3 0.014
digestive tract development GO:0048565 265 0.013
neurotransmitter transport GO:0006836 2 0.013
internal peptidyl lysine acetylation GO:0018393 2 0.013
negative regulation of signal transduction GO:0009968 94 0.013
regulation of biosynthetic process GO:0009889 250 0.013
regulation of cell activation GO:0050865 1 0.013
regulation of exocytosis GO:0017157 1 0.013
regulation of apoptotic process GO:0042981 98 0.013
cellular response to organic substance GO:0071310 105 0.013
cytokinesis GO:0000910 3 0.013
cytoskeleton dependent cytokinesis GO:0061640 3 0.013
regulation of stem cell proliferation GO:0072091 2 0.013
mitotic cell cycle GO:0000278 64 0.013
peptidyl serine phosphorylation GO:0018105 1 0.013
rna transport GO:0050658 2 0.013
blood vessel development GO:0001568 246 0.013
sensory organ morphogenesis GO:0090596 200 0.013
negative regulation of gene expression GO:0010629 65 0.013
regulation of reproductive process GO:2000241 4 0.013
stem cell maintenance GO:0019827 4 0.013
nucleobase containing compound transport GO:0015931 2 0.013
secondary metabolic process GO:0019748 3 0.013
vasculature development GO:0001944 278 0.013
hatching GO:0035188 4 0.013
melanin metabolic process GO:0006582 2 0.013
blood vessel morphogenesis GO:0048514 216 0.013
regulation of cellular macromolecule biosynthetic process GO:2000112 222 0.013
system process GO:0003008 185 0.013
negative regulation of protein complex assembly GO:0031333 1 0.013
regulation of cell death GO:0010941 103 0.012
regulation of peptidyl tyrosine phosphorylation GO:0050730 1 0.012
regulation of gtpase activity GO:0043087 2 0.012
positive regulation of gtp catabolic process GO:0033126 1 0.012
rna export from nucleus GO:0006405 1 0.012
alpha amino acid metabolic process GO:1901605 3 0.012
establishment of rna localization GO:0051236 3 0.012
cellular response to stress GO:0033554 62 0.012
regulation of transcription from rna polymerase ii promoter in response to stress GO:0043618 0 0.012
negative regulation of response to dna damage stimulus GO:2001021 3 0.012
heterocycle metabolic process GO:0046483 290 0.012
regulation of gtp catabolic process GO:0033124 2 0.012
oxidation reduction process GO:0055114 41 0.012
developmental growth involved in morphogenesis GO:0060560 86 0.012
regulation of transporter activity GO:0032409 2 0.012
response to uv GO:0009411 3 0.012
regulation of cellular protein metabolic process GO:0032268 52 0.012
organism emergence from protective structure GO:0071684 4 0.012
cellular response to nutrient levels GO:0031669 2 0.012
multicellular organism growth GO:0035264 4 0.012
regulation of synaptic plasticity GO:0048167 1 0.012
response to drug GO:0042493 3 0.012
cellular response to hypoxia GO:0071456 1 0.012
protein complex disassembly GO:0043241 1 0.012
microtubule cytoskeleton organization GO:0000226 33 0.012
single organism organelle organization GO:1902589 199 0.012
lipid storage GO:0019915 1 0.012
viral process GO:0016032 1 0.012
mitotic cell cycle embryonic GO:0045448 2 0.011
negative regulation of catabolic process GO:0009895 3 0.011
regulation of establishment of protein localization to plasma membrane GO:0090003 1 0.011
rna localization GO:0006403 4 0.011
response to chemical GO:0042221 320 0.011
heart development GO:0007507 313 0.011
response to nutrient GO:0007584 3 0.011
regulation of protein localization to plasma membrane GO:1903076 1 0.011
gamete generation GO:0007276 33 0.011
central nervous system development GO:0007417 387 0.011
negative regulation of protein phosphorylation GO:0001933 4 0.011
regulation of translational initiation GO:0006446 1 0.011
cellular protein modification process GO:0006464 100 0.011
regulation of microtubule cytoskeleton organization GO:0070507 3 0.011
stem cell proliferation GO:0072089 4 0.011
single organism transport GO:0044765 206 0.011
regulation of phosphate metabolic process GO:0019220 43 0.011
positive regulation of cell adhesion GO:0045785 1 0.011
regulation of neuronal synaptic plasticity GO:0048168 1 0.011
microtubule polymerization or depolymerization GO:0031109 3 0.011
proteolysis involved in cellular protein catabolic process GO:0051603 3 0.011
g2 dna damage checkpoint GO:0031572 3 0.011
proteasomal protein catabolic process GO:0010498 2 0.010
translational initiation GO:0006413 3 0.010
regulation of developmental process GO:0050793 247 0.010
negative regulation of cellular biosynthetic process GO:0031327 55 0.010
ubiquitin dependent protein catabolic process GO:0006511 3 0.010
regulation of mitotic cell cycle GO:0007346 25 0.010
sex determination GO:0007530 1 0.010
regulation of organ growth GO:0046620 3 0.010
double strand break repair GO:0006302 3 0.010
regulation of multicellular organismal development GO:2000026 223 0.010
protein phosphorylation GO:0006468 47 0.010
negative regulation of biosynthetic process GO:0009890 55 0.010
axon guidance GO:0007411 86 0.010
cellular component biogenesis GO:0044085 178 0.010
positive regulation of cellular amine metabolic process GO:0033240 0 0.010
specification of axis polarity GO:0065001 4 0.010
protein polymerization GO:0051258 4 0.010
interspecies interaction between organisms GO:0044419 4 0.010

lsm1 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

Disease DO term ID Size Probability Func Analog Org
disease of metabolism DOID:0014667 0 0.014
inherited metabolic disorder DOID:655 0 0.014
disease of anatomical entity DOID:7 0 0.012