Danio rerio

0 known processes

lysmd3

LysM, putative peptidoglycan-binding, domain containing 3

(Aliases: sb:cb462,wu:fb75a04,zgc:86877)

lysmd3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
golgi vesicle transport GO:0048193 3 0.161
cellular protein catabolic process GO:0044257 4 0.151
larval development GO:0002164 2 0.108
response to stress GO:0006950 263 0.089
locomotion GO:0040011 313 0.088
cellular biosynthetic process GO:0044249 286 0.088
proteasomal protein catabolic process GO:0010498 2 0.088
ubiquitin dependent protein catabolic process GO:0006511 3 0.086
er to golgi vesicle mediated transport GO:0006888 1 0.082
modification dependent protein catabolic process GO:0019941 3 0.079
biosynthetic process GO:0009058 294 0.077
regulation of biosynthetic process GO:0009889 250 0.077
organic substance biosynthetic process GO:1901576 289 0.076
macromolecule biosynthetic process GO:0009059 227 0.074
proteolysis involved in cellular protein catabolic process GO:0051603 3 0.072
negative regulation of protein kinase activity GO:0006469 4 0.072
proteasome mediated ubiquitin dependent protein catabolic process GO:0043161 2 0.069
regulation of signaling GO:0023051 235 0.068
nitrogen compound metabolic process GO:0006807 319 0.068
cellular macromolecule metabolic process GO:0044260 391 0.066
cell migration GO:0016477 237 0.064
positive regulation of catabolic process GO:0009896 4 0.063
regulation of metabolic process GO:0019222 359 0.061
cellular nitrogen compound metabolic process GO:0034641 290 0.060
cellular protein modification process GO:0006464 100 0.054
single organism transport GO:0044765 206 0.053
cellular component morphogenesis GO:0032989 336 0.053
cell part morphogenesis GO:0032990 246 0.052
negative regulation of protein phosphorylation GO:0001933 4 0.051
skeletal system development GO:0001501 181 0.050
positive regulation of cellular catabolic process GO:0031331 3 0.050
maintenance of location GO:0051235 4 0.050
regionalization GO:0003002 274 0.049
signal transduction GO:0007165 455 0.049
cell projection organization GO:0030030 284 0.048
negative regulation of cellular process GO:0048523 283 0.047
positive regulation of metabolic process GO:0009893 108 0.047
aging GO:0007568 2 0.047
negative regulation of signal transduction GO:0009968 94 0.047
regulation of cell communication GO:0010646 232 0.046
modification dependent macromolecule catabolic process GO:0043632 3 0.046
regulation of cellular metabolic process GO:0031323 320 0.046
cellular component movement GO:0006928 335 0.045
microtubule organizing center organization GO:0031023 1 0.044
single organism metabolic process GO:0044710 217 0.044
gtp metabolic process GO:0046039 4 0.043
apoptotic process GO:0006915 116 0.043
programmed cell death GO:0012501 119 0.042
single organism localization GO:1902578 225 0.042
transport GO:0006810 220 0.042
regulation of macromolecule metabolic process GO:0060255 317 0.041
regulation of nitrogen compound metabolic process GO:0051171 251 0.038
lipid storage GO:0019915 1 0.038
regulation of protein catabolic process GO:0042176 1 0.038
morphogenesis of an epithelium GO:0002009 333 0.037
embryo development ending in birth or egg hatching GO:0009792 271 0.036
organic cyclic compound metabolic process GO:1901360 301 0.036
protein metabolic process GO:0019538 183 0.036
regulation of protein complex assembly GO:0043254 3 0.035
establishment of protein localization to organelle GO:0072594 4 0.035
organelle organization GO:0006996 227 0.034
cellular macromolecule biosynthetic process GO:0034645 224 0.034
ear development GO:0043583 127 0.034
positive regulation of biological process GO:0048518 253 0.033
regulation of proteolysis involved in cellular protein catabolic process GO:1903050 1 0.033
protein targeting to membrane GO:0006612 1 0.033
cell morphogenesis GO:0000902 289 0.033
head development GO:0060322 303 0.032
localization of cell GO:0051674 244 0.032
regulation of nucleoside metabolic process GO:0009118 2 0.032
regulation of response to stimulus GO:0048583 269 0.031
establishment of localization GO:0051234 244 0.031
regulation of cellular macromolecule biosynthetic process GO:2000112 222 0.031
positive regulation of purine nucleotide catabolic process GO:0033123 1 0.031
inner ear development GO:0048839 126 0.031
nucleobase containing compound metabolic process GO:0006139 274 0.030
single organism organelle organization GO:1902589 199 0.030
negative regulation of kinase activity GO:0033673 4 0.029
regulation of cell death GO:0010941 103 0.029
positive regulation of cellular process GO:0048522 201 0.029
extrinsic apoptotic signaling pathway GO:0097191 3 0.029
regulation of nucleotide catabolic process GO:0030811 2 0.029
intracellular signal transduction GO:0035556 85 0.028
nucleocytoplasmic transport GO:0006913 4 0.028
stem cell division GO:0017145 1 0.028
regulation of primary metabolic process GO:0080090 311 0.028
negative regulation of response to stimulus GO:0048585 104 0.027
positive regulation of nitrogen compound metabolic process GO:0051173 69 0.027
central nervous system development GO:0007417 387 0.027
positive regulation of gtp catabolic process GO:0033126 1 0.027
regulation of signal transduction GO:0009966 225 0.027
regulation of cellular protein catabolic process GO:1903362 1 0.027
glucose homeostasis GO:0042593 1 0.027
regulation of extrinsic apoptotic signaling pathway GO:2001236 3 0.026
multi organism process GO:0051704 134 0.026
brain development GO:0007420 293 0.026
growth GO:0040007 174 0.026
negative regulation of catabolic process GO:0009895 3 0.026
protein dephosphorylation GO:0006470 3 0.026
heterocycle metabolic process GO:0046483 290 0.026
cell surface receptor signaling pathway GO:0007166 325 0.025
regulation of apoptotic process GO:0042981 98 0.025
negative regulation of cell communication GO:0010648 96 0.025
cellular aromatic compound metabolic process GO:0006725 295 0.025
cellular response to extracellular stimulus GO:0031668 2 0.024
negative regulation of cellular catabolic process GO:0031330 3 0.024
phagocytosis GO:0006909 3 0.024
skeletal system morphogenesis GO:0048705 102 0.024
generation of neurons GO:0048699 385 0.024
regulation of programmed cell death GO:0043067 101 0.024
positive regulation of transport GO:0051050 2 0.024
regulation of synaptic growth at neuromuscular junction GO:0008582 1 0.023
centrosome cycle GO:0007098 1 0.023
regulation of cellular biosynthetic process GO:0031326 245 0.023
sensory perception GO:0007600 39 0.023
cellular protein metabolic process GO:0044267 129 0.023
cell projection morphogenesis GO:0048858 244 0.022
embryonic organ morphogenesis GO:0048562 274 0.022
negative regulation of extrinsic apoptotic signaling pathway GO:2001237 2 0.022
cellular response to stress GO:0033554 62 0.022
regulation of biological quality GO:0065008 263 0.021
aromatic compound biosynthetic process GO:0019438 217 0.021
cellular modified amino acid metabolic process GO:0006575 3 0.021
response to glucocorticoid GO:0051384 1 0.021
regulation of intracellular signal transduction GO:1902531 57 0.021
b cell activation GO:0042113 2 0.021
positive regulation of cellular carbohydrate metabolic process GO:0010676 1 0.021
positive regulation of nucleobase containing compound metabolic process GO:0045935 69 0.021
centrosome organization GO:0051297 1 0.020
phosphate containing compound metabolic process GO:0006796 108 0.020
response to chemical GO:0042221 320 0.020
protein modification process GO:0036211 100 0.020
guanosine containing compound catabolic process GO:1901069 2 0.020
hormone secretion GO:0046879 2 0.019
nuclear import GO:0051170 3 0.019
cellular response to external stimulus GO:0071496 2 0.019
neuron projection morphogenesis GO:0048812 161 0.019
visual perception GO:0007601 17 0.019
negative regulation of biological process GO:0048519 304 0.019
cellular catabolic process GO:0044248 27 0.019
carbohydrate derivative metabolic process GO:1901135 61 0.019
response to nutrient GO:0007584 3 0.018
response to carbohydrate GO:0009743 3 0.018
regulation of protein ubiquitination GO:0031396 3 0.018
guanosine containing compound metabolic process GO:1901068 4 0.018
gtp catabolic process GO:0006184 2 0.018
cellular nitrogen compound biosynthetic process GO:0044271 218 0.018
autophagy GO:0006914 4 0.018
regulation of hormone secretion GO:0046883 2 0.018
regulation of multicellular organism growth GO:0040014 4 0.018
regulation of gtpase activity GO:0043087 2 0.018
negative regulation of signaling GO:0023057 96 0.018
system process GO:0003008 185 0.018
neurological system process GO:0050877 62 0.018
b cell differentiation GO:0030183 1 0.017
regulation of gtp catabolic process GO:0033124 2 0.017
chemosensory behavior GO:0007635 1 0.017
regulation of macromolecule biosynthetic process GO:0010556 225 0.017
cellular response to radiation GO:0071478 4 0.017
establishment of localization in cell GO:0051649 77 0.017
alcohol biosynthetic process GO:0046165 2 0.017
death GO:0016265 121 0.017
protein polyubiquitination GO:0000209 4 0.017
cell motility GO:0048870 244 0.017
positive regulation of nucleotide catabolic process GO:0030813 1 0.017
rhodopsin mediated signaling pathway GO:0016056 1 0.017
cellular monovalent inorganic cation homeostasis GO:0030004 2 0.017
fin development GO:0033333 77 0.017
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress GO:0070059 3 0.017
blood vessel development GO:0001568 246 0.017
hormone transport GO:0009914 2 0.017
cell cycle g1 s phase transition GO:0044843 1 0.016
regulation of nucleobase containing compound metabolic process GO:0019219 250 0.016
regulation of transcription dna templated GO:0006355 213 0.016
cellular response to starvation GO:0009267 1 0.016
hematopoietic or lymphoid organ development GO:0048534 191 0.016
positive regulation of gtpase activity GO:0043547 1 0.016
regulation of nucleic acid templated transcription GO:1903506 213 0.016
neuron differentiation GO:0030182 353 0.016
meiotic cell cycle process GO:1903046 3 0.015
transcription from rna polymerase ii promoter GO:0006366 80 0.015
carbohydrate homeostasis GO:0033500 1 0.015
lens fiber cell development GO:0070307 3 0.015
enzyme linked receptor protein signaling pathway GO:0007167 106 0.015
regulation of cytoplasmic transport GO:1903649 4 0.015
regulation of metal ion transport GO:0010959 4 0.015
nucleic acid metabolic process GO:0090304 244 0.015
gene expression GO:0010467 252 0.014
forebrain cell migration GO:0021885 1 0.014
negative regulation of mapk cascade GO:0043409 4 0.014
response to endogenous stimulus GO:0009719 83 0.014
response to amino acid GO:0043200 2 0.014
transmembrane transport GO:0055085 120 0.014
regulation of multicellular organismal development GO:2000026 223 0.014
cell death GO:0008219 121 0.014
oxoacid metabolic process GO:0043436 31 0.014
negative regulation of apoptotic process GO:0043066 55 0.014
immune system process GO:0002376 241 0.014
vasculature development GO:0001944 278 0.014
regulation of phosphate metabolic process GO:0019220 43 0.014
positive regulation of biosynthetic process GO:0009891 68 0.014
nuclear export GO:0051168 1 0.014
nuclear transport GO:0051169 4 0.014
negative regulation of autophagy GO:0010507 1 0.014
immune system development GO:0002520 191 0.014
regulation of developmental process GO:0050793 247 0.013
carboxylic acid metabolic process GO:0019752 22 0.013
triglyceride homeostasis GO:0070328 2 0.013
negative regulation of response to cytokine stimulus GO:0060761 2 0.013
meiotic nuclear division GO:0007126 4 0.013
multicellular organismal response to stress GO:0033555 2 0.013
homeostatic process GO:0042592 142 0.013
regulation of protein modification by small protein conjugation or removal GO:1903320 3 0.013
protein heterooligomerization GO:0051291 1 0.013
cellular component biogenesis GO:0044085 178 0.013
regulation of blood vessel size GO:0050880 2 0.013
primary neural tube formation GO:0014020 1 0.013
positive regulation of cellular metabolic process GO:0031325 94 0.013
regulation of dna replication GO:0006275 3 0.013
positive regulation of macromolecule metabolic process GO:0010604 93 0.012
hormone biosynthetic process GO:0042446 3 0.012
response to glucose GO:0009749 3 0.012
epithelium migration GO:0090132 25 0.012
sensory organ development GO:0007423 393 0.012
response to corticosteroid GO:0031960 1 0.012
sensory perception of chemical stimulus GO:0007606 3 0.012
organonitrogen compound metabolic process GO:1901564 74 0.012
purine containing compound metabolic process GO:0072521 29 0.012
reproductive process GO:0022414 40 0.012
cellular response to topologically incorrect protein GO:0035967 2 0.012
embryonic skeletal system development GO:0048706 97 0.012
positive regulation of nucleic acid templated transcription GO:1903508 57 0.012
regulation of protein polymerization GO:0032271 2 0.012
sensory perception of smell GO:0007608 2 0.012
regulation of multicellular organismal process GO:0051239 277 0.011
segmentation GO:0035282 97 0.011
cellular localization GO:0051641 97 0.011
regulation of protein import into nucleus GO:0042306 2 0.011
positive regulation of protein complex assembly GO:0031334 2 0.011
positive regulation of cell cycle GO:0045787 3 0.011
cellular aldehyde metabolic process GO:0006081 4 0.011
single organism nuclear import GO:1902593 3 0.011
cytokinesis GO:0000910 3 0.011
multicellular organism growth GO:0035264 4 0.011
positive regulation of camp metabolic process GO:0030816 2 0.011
regulation of purine nucleotide catabolic process GO:0033121 2 0.011
mesenchyme development GO:0060485 127 0.011
regulation of catalytic activity GO:0050790 55 0.011
regulation of cell activation GO:0050865 1 0.011
g1 s transition of mitotic cell cycle GO:0000082 1 0.011
regulation of ph GO:0006885 3 0.011
muscle cell development GO:0055001 115 0.011
cellular amino acid metabolic process GO:0006520 7 0.011
response to external stimulus GO:0009605 264 0.011
rna biosynthetic process GO:0032774 181 0.011
adult behavior GO:0030534 2 0.011
synaptic growth at neuromuscular junction GO:0051124 2 0.011
positive regulation of secretion by cell GO:1903532 1 0.011
nucleobase containing compound biosynthetic process GO:0034654 205 0.011
striated muscle cell differentiation GO:0051146 129 0.011
regulation of dna templated transcription elongation GO:0032784 3 0.011
embryonic limb morphogenesis GO:0030326 2 0.011
localization within membrane GO:0051668 1 0.011
organic acid metabolic process GO:0006082 31 0.011
muscle organ development GO:0007517 101 0.010
golgi organization GO:0007030 1 0.010
small gtpase mediated signal transduction GO:0007264 8 0.010
neuron development GO:0048666 262 0.010
interaction with host GO:0051701 4 0.010
response to organic substance GO:0010033 153 0.010
positive regulation of cell adhesion GO:0045785 1 0.010
single organism biosynthetic process GO:0044711 71 0.010
protein polymerization GO:0051258 4 0.010
regulation of ion transmembrane transporter activity GO:0032412 2 0.010
signal transduction in absence of ligand GO:0038034 1 0.010
regulation of phosphorus metabolic process GO:0051174 43 0.010
alpha amino acid metabolic process GO:1901605 3 0.010
positive regulation of cellular component biogenesis GO:0044089 3 0.010
cellular amine metabolic process GO:0044106 2 0.010
intracellular transport GO:0046907 32 0.010
catabolic process GO:0009056 32 0.010
locomotor rhythm GO:0045475 3 0.010

lysmd3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

Disease DO term ID Size Probability Func Analog Org
disease of cellular proliferation DOID:14566 0 0.032
cancer DOID:162 0 0.032
organ system cancer DOID:0050686 0 0.020
disease of anatomical entity DOID:7 0 0.012
nervous system disease DOID:863 0 0.012