Danio rerio

0 known processes

ppm1d

protein phosphatase 1D magnesium-dependent, delta isoform

(Aliases: MGC55836,zgc:55836,zgc:77316,wu:fj44c08)

ppm1d biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
larval development GO:0002164 2 0.368
nucleic acid templated transcription GO:0097659 181 0.204
meiotic nuclear division GO:0007126 4 0.168
cellular aromatic compound metabolic process GO:0006725 295 0.162
rna metabolic process GO:0016070 219 0.148
internal protein amino acid acetylation GO:0006475 2 0.137
regulation of mrna splicing via spliceosome GO:0048024 3 0.127
protein acetylation GO:0006473 2 0.127
regulation of cellular metabolic process GO:0031323 320 0.125
cellular macromolecule metabolic process GO:0044260 391 0.124
Human
cellular biosynthetic process GO:0044249 286 0.119
regulation of gene expression GO:0010468 265 0.118
organic substance biosynthetic process GO:1901576 289 0.114
gene expression GO:0010467 252 0.104
peptidyl lysine acetylation GO:0018394 2 0.100
negative regulation of cellular process GO:0048523 283 0.097
regulation of macromolecule metabolic process GO:0060255 317 0.090
modification dependent macromolecule catabolic process GO:0043632 3 0.090
cellular macromolecule biosynthetic process GO:0034645 224 0.089
regulation of cellular macromolecule biosynthetic process GO:2000112 222 0.087
biosynthetic process GO:0009058 294 0.082
proteasome mediated ubiquitin dependent protein catabolic process GO:0043161 2 0.081
internal peptidyl lysine acetylation GO:0018393 2 0.080
nitrogen compound metabolic process GO:0006807 319 0.078
transcription dna templated GO:0006351 181 0.076
cell surface receptor signaling pathway GO:0007166 325 0.073
macromolecule biosynthetic process GO:0009059 227 0.072
regulation of meiotic cell cycle GO:0051445 1 0.067
cellular nitrogen compound biosynthetic process GO:0044271 218 0.064
regulation of nitrogen compound metabolic process GO:0051171 251 0.063
negative regulation of macromolecule metabolic process GO:0010605 76 0.062
regulation of metabolic process GO:0019222 359 0.061
immune system process GO:0002376 241 0.061
regionalization GO:0003002 274 0.060
heterocycle metabolic process GO:0046483 290 0.059
regulation of biosynthetic process GO:0009889 250 0.058
proteolysis involved in cellular protein catabolic process GO:0051603 3 0.057
cell projection morphogenesis GO:0048858 244 0.057
single organism metabolic process GO:0044710 217 0.057
cell part morphogenesis GO:0032990 246 0.055
ubiquitin dependent protein catabolic process GO:0006511 3 0.054
cell migration GO:0016477 237 0.052
multicellular organism growth GO:0035264 4 0.050
central nervous system development GO:0007417 387 0.049
cellular nitrogen compound metabolic process GO:0034641 290 0.047
neuron differentiation GO:0030182 353 0.047
regulation of multicellular organism growth GO:0040014 4 0.046
negative regulation of biological process GO:0048519 304 0.045
nucleobase containing compound metabolic process GO:0006139 274 0.045
cellular protein modification process GO:0006464 100 0.045
Human
positive regulation of cellular component biogenesis GO:0044089 3 0.044
alternative mrna splicing via spliceosome GO:0000380 1 0.042
protein modification process GO:0036211 100 0.042
Human
heterocycle biosynthetic process GO:0018130 215 0.041
protein complex disassembly GO:0043241 1 0.040
organic cyclic compound metabolic process GO:1901360 301 0.040
regulation of rna metabolic process GO:0051252 224 0.040
positive regulation of jun kinase activity GO:0043507 2 0.040
rna biosynthetic process GO:0032774 181 0.039
regulation of transcription dna templated GO:0006355 213 0.039
aromatic compound biosynthetic process GO:0019438 217 0.039
regulation of cellular biosynthetic process GO:0031326 245 0.039
positive regulation of biological process GO:0048518 253 0.038
regulation of cellular amino acid metabolic process GO:0006521 0 0.037
regulation of primary metabolic process GO:0080090 311 0.036
amine metabolic process GO:0009308 2 0.036
growth GO:0040007 174 0.035
positive regulation of cellular amine metabolic process GO:0033240 0 0.035
organic cyclic compound biosynthetic process GO:1901362 223 0.035
positive regulation of cell activation GO:0050867 1 0.035
sensory organ development GO:0007423 393 0.035
organelle organization GO:0006996 227 0.035
regulation of macromolecule biosynthetic process GO:0010556 225 0.035
locomotion GO:0040011 313 0.035
chromosome organization involved in meiosis GO:0070192 1 0.034
cellular component morphogenesis GO:0032989 336 0.034
nucleocytoplasmic transport GO:0006913 4 0.034
single organism organelle organization GO:1902589 199 0.034
stem cell maintenance GO:0019827 4 0.034
generation of neurons GO:0048699 385 0.033
embryonic organ development GO:0048568 381 0.033
cell projection organization GO:0030030 284 0.033
transmembrane receptor protein tyrosine kinase signaling pathway GO:0007169 42 0.033
meiosis i GO:0007127 1 0.032
development of primary female sexual characteristics GO:0046545 4 0.032
negative regulation of nitrogen compound metabolic process GO:0051172 59 0.031
hemopoiesis GO:0030097 183 0.031
immune system development GO:0002520 191 0.031
cell morphogenesis GO:0000902 289 0.031
cellular amine metabolic process GO:0044106 2 0.030
regulation of cytokine production GO:0001817 3 0.030
regulation of nucleic acid templated transcription GO:1903506 213 0.030
maintenance of location GO:0051235 4 0.030
cellular component movement GO:0006928 335 0.030
macromolecule modification GO:0043412 111 0.029
Human
regulation of gene expression epigenetic GO:0040029 11 0.029
positive regulation of map kinase activity GO:0043406 3 0.029
positive regulation of catabolic process GO:0009896 4 0.028
negative regulation of gene expression GO:0010629 65 0.028
cellular protein metabolic process GO:0044267 129 0.028
Human
regulation of cellular amine metabolic process GO:0033238 0 0.028
proteasomal protein catabolic process GO:0010498 2 0.027
negative regulation of macromolecule biosynthetic process GO:0010558 48 0.027
regulation of cellular protein catabolic process GO:1903362 1 0.027
regulation of multicellular organismal process GO:0051239 277 0.027
localization of cell GO:0051674 244 0.026
negative regulation of metabolic process GO:0009892 86 0.026
positive regulation of cellular amino acid metabolic process GO:0045764 0 0.026
histone h3 k4 methylation GO:0051568 2 0.025
meiotic chromosome segregation GO:0045132 3 0.025
protein acylation GO:0043543 3 0.025
cellular component disassembly GO:0022411 1 0.025
female gonad development GO:0008585 4 0.025
neuron projection morphogenesis GO:0048812 161 0.024
cellular amino acid metabolic process GO:0006520 7 0.024
transcription from rna polymerase ii promoter GO:0006366 80 0.024
regulation of alternative mrna splicing via spliceosome GO:0000381 1 0.024
regulation of protein complex assembly GO:0043254 3 0.024
regulation of cellular ketone metabolic process GO:0010565 7 0.024
regulation of nucleobase containing compound metabolic process GO:0019219 250 0.024
sequestering of metal ion GO:0051238 3 0.024
digestive tract development GO:0048565 265 0.023
hematopoietic or lymphoid organ development GO:0048534 191 0.023
modification dependent protein catabolic process GO:0019941 3 0.023
cellular ketone metabolic process GO:0042180 11 0.023
positive regulation of protein complex assembly GO:0031334 2 0.023
negative regulation of cytokine mediated signaling pathway GO:0001960 2 0.022
nucleobase containing compound biosynthetic process GO:0034654 205 0.022
nuclear transport GO:0051169 4 0.022
positive regulation of transport GO:0051050 2 0.022
protein metabolic process GO:0019538 183 0.022
Human
digestive system development GO:0055123 289 0.021
neuron development GO:0048666 262 0.021
regulation of proteolysis involved in cellular protein catabolic process GO:1903050 1 0.021
regulation of establishment of protein localization GO:0070201 4 0.021
macromolecular complex disassembly GO:0032984 1 0.021
autophagy GO:0006914 4 0.021
positive regulation of apoptotic signaling pathway GO:2001235 1 0.021
cellular component assembly GO:0022607 170 0.021
cellular component biogenesis GO:0044085 178 0.020
positive regulation of cell cycle GO:0045787 3 0.020
positive regulation of cellular catabolic process GO:0031331 3 0.020
nuclear division GO:0000280 23 0.020
nucleic acid metabolic process GO:0090304 244 0.020
response to drug GO:0042493 3 0.020
developmental growth GO:0048589 166 0.020
negative regulation of cell fate commitment GO:0010454 13 0.020
meiotic cell cycle process GO:1903046 3 0.020
mrna metabolic process GO:0016071 20 0.020
positive regulation of nitrogen compound metabolic process GO:0051173 69 0.019
negative regulation of transcription dna templated GO:0045892 45 0.019
chromatin modification GO:0016568 21 0.019
b cell activation GO:0042113 2 0.019
regulation of organelle organization GO:0033043 29 0.019
positive regulation of stress activated protein kinase signaling cascade GO:0070304 3 0.019
embryonic hemopoiesis GO:0035162 53 0.019
negative regulation of cytokine production GO:0001818 1 0.018
cell cycle g1 s phase transition GO:0044843 1 0.018
regulation of peptidyl tyrosine phosphorylation GO:0050730 1 0.018
production of molecular mediator of immune response GO:0002440 2 0.018
negative regulation of sequestering of calcium ion GO:0051283 4 0.018
negative regulation of catabolic process GO:0009895 3 0.018
developmental growth involved in morphogenesis GO:0060560 86 0.018
oxoacid metabolic process GO:0043436 31 0.018
small molecule metabolic process GO:0044281 77 0.018
regulation of rna biosynthetic process GO:2001141 213 0.018
lamellipodium organization GO:0097581 1 0.018
myeloid cell differentiation GO:0030099 86 0.018
carboxylic acid metabolic process GO:0019752 22 0.018
regulation of protein catabolic process GO:0042176 1 0.018
protein localization to nucleus GO:0034504 3 0.018
stem cell division GO:0017145 1 0.018
lipid storage GO:0019915 1 0.018
chemosensory behavior GO:0007635 1 0.017
peptidyl amino acid modification GO:0018193 16 0.017
membrane invagination GO:0010324 1 0.017
death GO:0016265 121 0.017
regulation of signal transduction GO:0009966 225 0.017
organic acid metabolic process GO:0006082 31 0.017
negative regulation of cell fate specification GO:0009996 11 0.017
positive regulation of jnk cascade GO:0046330 3 0.017
embryo development ending in birth or egg hatching GO:0009792 271 0.017
camera type eye development GO:0043010 222 0.017
response to chemical GO:0042221 320 0.017
regulation of cell activation GO:0050865 1 0.017
establishment of apical basal cell polarity GO:0035089 2 0.017
polarized epithelial cell differentiation GO:0030859 4 0.017
aging GO:0007568 2 0.017
chromosome organization GO:0051276 31 0.016
response to corticosteroid GO:0031960 1 0.016
rna 3 end processing GO:0031123 2 0.016
establishment of localization GO:0051234 244 0.016
response to stress GO:0006950 263 0.016
regulation of jak stat cascade GO:0046425 3 0.016
anterior posterior pattern specification GO:0009952 152 0.016
response to ketone GO:1901654 1 0.016
mrna processing GO:0006397 14 0.016
regulation of protein targeting GO:1903533 2 0.016
intracellular transport GO:0046907 32 0.016
negative regulation of biosynthetic process GO:0009890 55 0.016
positive regulation of cellular process GO:0048522 201 0.016
embryonic organ morphogenesis GO:0048562 274 0.016
regulation of cell differentiation GO:0045595 142 0.015
regulation of cytoplasmic transport GO:1903649 4 0.015
regulation of protein ubiquitination GO:0031396 3 0.015
cellular response to starvation GO:0009267 1 0.015
digestive tract morphogenesis GO:0048546 231 0.015
specification of organ identity GO:0010092 2 0.015
regulation of protein localization to nucleus GO:1900180 2 0.015
spermatid development GO:0007286 2 0.015
neuron projection development GO:0031175 180 0.015
regulation of developmental process GO:0050793 247 0.015
cellular response to organic substance GO:0071310 105 0.015
segmentation GO:0035282 97 0.015
negative regulation of cellular macromolecule biosynthetic process GO:2000113 48 0.015
cytosolic calcium ion transport GO:0060401 3 0.015
spermatid differentiation GO:0048515 2 0.015
regulation of reproductive process GO:2000241 4 0.015
negative regulation of dna metabolic process GO:0051053 4 0.015
dna templated transcription elongation GO:0006354 3 0.015
positive regulation of cellular biosynthetic process GO:0031328 68 0.015
female sex differentiation GO:0046660 4 0.015
g2 dna damage checkpoint GO:0031572 3 0.015
protein polymerization GO:0051258 4 0.015
regulation of canonical wnt signaling pathway GO:0060828 34 0.015
enzyme linked receptor protein signaling pathway GO:0007167 106 0.015
photoreceptor cell fate commitment GO:0046552 1 0.014
macromolecular complex subunit organization GO:0043933 74 0.014
response to external stimulus GO:0009605 264 0.014
adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains GO:0002460 4 0.014
mononuclear cell proliferation GO:0032943 1 0.014
cell fate specification GO:0001708 68 0.014
cellular response to chemical stimulus GO:0070887 157 0.014
regulation of wnt signaling pathway GO:0030111 53 0.014
positive regulation of myeloid cell differentiation GO:0045639 2 0.014
neuronal stem cell maintenance GO:0097150 2 0.014
positive regulation of immune effector process GO:0002699 3 0.014
regulation of protein import into nucleus GO:0042306 2 0.014
regulation of organelle assembly GO:1902115 4 0.014
muscle structure development GO:0061061 196 0.014
sequestering of calcium ion GO:0051208 3 0.014
negative regulation of nucleobase containing compound metabolic process GO:0045934 59 0.014
negative regulation of defense response GO:0031348 2 0.014
negative regulation of stem cell differentiation GO:2000737 2 0.014
negative regulation of response to stimulus GO:0048585 104 0.013
regulation of circadian rhythm GO:0042752 4 0.013
regulation of cellular protein metabolic process GO:0032268 52 0.013
tube morphogenesis GO:0035239 349 0.013
positive regulation of epithelial cell proliferation GO:0050679 1 0.013
regulation of intracellular signal transduction GO:1902531 57 0.013
immunoglobulin mediated immune response GO:0016064 3 0.013
cilium organization GO:0044782 71 0.013
stem cell differentiation GO:0048863 117 0.013
tube closure GO:0060606 1 0.013
regulation of response to cytokine stimulus GO:0060759 3 0.013
negative regulation of signal transduction GO:0009968 94 0.013
positive regulation of lymphocyte mediated immunity GO:0002708 1 0.013
wound healing GO:0042060 90 0.013
phagocytosis GO:0006909 3 0.013
protein homooligomerization GO:0051260 3 0.013
cellular response to nutrient levels GO:0031669 2 0.013
regulation of nucleocytoplasmic transport GO:0046822 2 0.013
somatic cell dna recombination GO:0016444 1 0.012
cell substrate junction assembly GO:0007044 2 0.012
specification of symmetry GO:0009799 204 0.012
regulation of protein transport GO:0051223 3 0.012
regulation of cellular component organization GO:0051128 86 0.012
negative regulation of rna metabolic process GO:0051253 48 0.012
negative regulation of cellular biosynthetic process GO:0031327 55 0.012
transport GO:0006810 220 0.012
lymphocyte proliferation GO:0046651 1 0.012
positive regulation of multicellular organismal process GO:0051240 52 0.012
er to golgi vesicle mediated transport GO:0006888 1 0.012
regulation of protein metabolic process GO:0051246 56 0.012
gene silencing GO:0016458 4 0.012
transcription elongation from rna polymerase ii promoter GO:0006368 3 0.012
regulation of autophagy GO:0010506 3 0.012
dsrna fragmentation GO:0031050 1 0.012
regulation of cell communication GO:0010646 232 0.012
regulation of response to nutrient levels GO:0032107 1 0.012
establishment of monopolar cell polarity GO:0061162 2 0.012
somatic stem cell maintenance GO:0035019 1 0.012
protein polyubiquitination GO:0000209 4 0.012
cellular response to extracellular stimulus GO:0031668 2 0.012
regulation of synapse assembly GO:0051963 3 0.012
determination of bilateral symmetry GO:0009855 204 0.012
interspecies interaction between organisms GO:0044419 4 0.012
single organism nuclear import GO:1902593 3 0.012
regulation of mrna processing GO:0050684 3 0.012
regulation of cytokine mediated signaling pathway GO:0001959 3 0.012
cilium morphogenesis GO:0060271 85 0.011
dna templated transcription initiation GO:0006352 1 0.011
positive regulation of rna metabolic process GO:0051254 59 0.011
skin development GO:0043588 54 0.011
regulation of response to extracellular stimulus GO:0032104 1 0.011
cell morphogenesis involved in neuron differentiation GO:0048667 163 0.011
positive regulation of dna metabolic process GO:0051054 1 0.011
response to wounding GO:0009611 116 0.011
nuclear export GO:0051168 1 0.011
rna localization GO:0006403 4 0.011
negative regulation of cellular metabolic process GO:0031324 77 0.011
g1 s transition of mitotic cell cycle GO:0000082 1 0.011
peptidyl serine modification GO:0018209 2 0.011
adult behavior GO:0030534 2 0.011
positive regulation of macromolecule metabolic process GO:0010604 93 0.011
spindle assembly GO:0051225 2 0.011
dorsal ventral pattern formation GO:0009953 125 0.011
system process GO:0003008 185 0.011
synaptic target recognition GO:0008039 1 0.011
regulation of cell proliferation GO:0042127 37 0.011
negative regulation of protein phosphorylation GO:0001933 4 0.011
regulation of microtubule cytoskeleton organization GO:0070507 3 0.011
regulation of cellular carbohydrate metabolic process GO:0010675 4 0.011
negative regulation of myeloid cell differentiation GO:0045638 1 0.011
positive regulation of peptidyl tyrosine phosphorylation GO:0050731 1 0.011
sister chromatid cohesion GO:0007062 2 0.011
negative regulation of sequence specific dna binding transcription factor activity GO:0043433 2 0.011
negative regulation of multi organism process GO:0043901 3 0.011
regulation of cell fate commitment GO:0010453 22 0.011
muscle cell differentiation GO:0042692 139 0.011
cellular catabolic process GO:0044248 27 0.011
vasculature development GO:0001944 278 0.011
regulation of chromosome segregation GO:0051983 1 0.011
regulation of dna replication GO:0006275 3 0.011
mitochondrion organization GO:0007005 4 0.011
leukocyte proliferation GO:0070661 1 0.010
response to oxygen radical GO:0000305 2 0.010
protein import GO:0017038 3 0.010
positive regulation of jak stat cascade GO:0046427 2 0.010
primitive hemopoiesis GO:0060215 27 0.010
response to organic substance GO:0010033 153 0.010
establishment of protein localization to organelle GO:0072594 4 0.010
positive regulation of stress activated mapk cascade GO:0032874 3 0.010
signal transduction GO:0007165 455 0.010
calcium ion transport into cytosol GO:0060402 3 0.010
male meiosis GO:0007140 2 0.010
mitotic cell cycle embryonic GO:0045448 2 0.010
positive regulation of cytosolic calcium ion concentration GO:0007204 4 0.010
negative regulation of innate immune response GO:0045824 2 0.010

ppm1d disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.012