The network for 'nucleosome organization' in your query organism is displayed on the left, if relationships are supported by the integrated data. Moving any of the genes in that network will simultaneously update the homologs in the networks displayed to the right (if they exist). Additionally, hovering over any nodes will highlight the identified functionally similar homologs in the other networks. Last, the bar above the networks allows you to remove/add additional organisms. Simily drag and drop the organism names in the desired order.

Multiple Organisms

nucleosome organization

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of one or more nucleosomes.

Saccharomyces cerevisiae
Name Description Probability Func Analog Organism
HHT1 Hht1p 1.000
RSC8 Rsc8p 1.000
ARP4 Arp4p 1.000
RSC4 Rsc4p 0.999
HHF1 Hhf1p 0.999
NPL6 Npl6p 0.999
ARP9 Arp9p 0.998
STH1 Sth1p 0.998
RSC2 Rsc2p 0.998
SWR1 Swr1p 0.995
BDF1 Bdf1p 0.994
RSC6 Rsc6p 0.993
RSC9 Rsc9p 0.989
ISW1 Isw1p 0.980
ASF1 Asf1p 0.975
RSC3 Rsc3p 0.973
RSC58 Rsc58p 0.973
ARP7 Arp7p 0.967
HTZ1 Htz1p 0.942
HIR2 Hir2p 0.939
HHT2 Hht2p 0.937
RTT106 Rtt106p 0.923
ARP8 Arp8p 0.901
RLF2 Rlf2p 0.897
YTA7 Yta7p 0.889
HIR1 Hir1p 0.882
RSC1 Rsc1p 0.840
CAC2 Cac2p 0.827
SFH1 Sfh1p 0.826
RVB2 Rvb2p 0.824
HHF2 Hhf2p 0.816
NHP10 Nhp10p 0.780
YAF9 Yaf9p 0.743
RTT102 Rtt102p 0.689
SWC3 Swc3p 0.685
EPL1 Epl1p 0.663
HTB2 Htb2p 0.628
INO80 Ino80p 0.602
HIF1 Hif1p 0.602
SWI1 Swi1p 0.601
HPC2 Hpc2p 0.581
RCO1 Rco1p 0.557
IES4 Ies4p 0.549
SPT15 Spt15p 0.548
GCN5 Gcn5p 0.530
HHO1 Hho1p 0.526
NHP6A Nhp6ap 0.516
HAT2 Hat2p 0.512
SWC4 Swc4p 0.498
SWI3 Swi3p 0.495
RVB1 Rvb1p 0.487
HTL1 Htl1p 0.453
SWC5 Swc5p 0.440
SPT10 Spt10p 0.356
LEO1 Leo1p 0.313
RSC30 Rsc30p 0.310
MSI1 Msi1p 0.309
IES3 Ies3p 0.302
IES2 Ies2p 0.301
MOT1 Mot1p 0.284
NUP170 Nup170p 0.269
HTA2 Hta2p 0.254
HTB1 Htb1p 0.253
RAD16 Rad16p 0.241
RTT109 Rtt109p 0.239
HTA1 Hta1p 0.223
HIR3 Hir3p 0.196
SPT16 Spt16p 0.190
YNG1 Yng1p 0.181
SWC7 Swc7p 0.180
VPS71 Vps71p 0.156
IES5 Ies5p 0.144
ISW2 Isw2p 0.144
VPS72 Vps72p 0.143
HAT1 Hat1p 0.137
ESF1 Esf1p 0.120
SET2 Set2p 0.119
ARP5 Arp5p 0.117
ARP6 Arp6p 0.117
ORC4 Orc4p 0.114
CKB2 Ckb2p 0.111
IES6 Ies6p 0.108
HDA1 Hda1p 0.108
ITC1 Itc1p 0.104
BDF2 Bdf2p 0.098
PSH1 Psh1p 0.093
REB1 Reb1p 0.089
TAF5 Taf5p 0.089
ACT1 Act1p 0.076
UME1 Ume1p 0.075
ORC3 Orc3p 0.074
IES1 Ies1p 0.073
SIN3 Sin3p 0.072
EAF1 Eaf1p 0.071
CHD1 Chd1p 0.070
RPD3 Rpd3p 0.066
SAS2 Sas2p 0.064
RAP1 Rap1p 0.062
RTG2 Rtg2p 0.062
HOS2 Hos2p 0.059
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Caenorhabditis elegans
Name Description Probability Func Analog Organism
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Danio rerio
Name Description Probability Func Analog Organism
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Drosophila melanogaster
Name Description Probability Func Analog Organism
Snr1 Snf5-related 1 0.996
Caf1 Chromatin assembly factor 1 subunit 0.991
Bap55 Brahma associated protein 55kD 0.948
Rpd3 CG7471 gene product from transcript CG7471-RA 0.924
ash1 absent, small, or homeotic discs 1 0.907
His2Av Histone H2A variant 0.824
brm brahma 0.745
Mi-2 CG8103 gene product from transcript CG8103-RA 0.718
CG14215 CG14215 gene product from transcript CG14215-RA 0.693
rept reptin 0.686
Chro Chromator 0.650
asf1 anti-silencing factor 1 0.625
FK506-bp2 FK506-binding protein 2 0.567
CG14213 CG14213 gene product from transcript CG14213-RB 0.538
smt3 CG4494 gene product from transcript CG4494-RA 0.526
His4:CG33879 CG33879 gene product from transcript CG33879-RA 0.498
nej nejire 0.479
His3.3B Histone H3.3B 0.434
His4:CG33905 CG33905 gene product from transcript CG33905-RA 0.430
His4:CG33881 CG33881 gene product from transcript CG33881-RA 0.419
His4:CG33877 CG33877 gene product from transcript CG33877-RA 0.413
CG4400 CG4400 gene product from transcript CG4400-RA 0.411
His4:CG33907 CG33907 gene product from transcript CG33907-RA 0.409
MRG15 CG6363 gene product from transcript CG6363-RA 0.389
His4:CG33891 CG33891 gene product from transcript CG33891-RA 0.369
mip130 Myb-interacting protein 130 0.359
His4:CG33897 CG33897 gene product from transcript CG33897-RA 0.356
CG9135 CG9135 gene product from transcript CG9135-RB 0.351
His4:CG33909 CG33909 gene product from transcript CG33909-RA 0.349
His4:CG33885 CG33885 gene product from transcript CG33885-RA 0.341
His4:CG33887 CG33887 gene product from transcript CG33887-RA 0.341
His4:CG33883 CG33883 gene product from transcript CG33883-RA 0.341
dalao CG7055 gene product from transcript CG7055-RA 0.298
His4:CG33895 CG33895 gene product from transcript CG33895-RA 0.272
His4:CG33893 CG33893 gene product from transcript CG33893-RA 0.272
sle slender lobes 0.265
His4:CG33901 CG33901 gene product from transcript CG33901-RA 0.258
His4:CG33899 CG33899 gene product from transcript CG33899-RA 0.233
BRWD3 CG31132 gene product from transcript CG31132-RA 0.226
pr-set7 CG3307 gene product from transcript CG3307-RC 0.226
Nf-YB Nuclear factor Y-box B 0.214
Jarid2 CG3654 gene product from transcript CG3654-RD 0.202
Su(var)2-HP2 CG12864 gene product from transcript CG12864-RB 0.202
His4:CG33903 CG33903 gene product from transcript CG33903-RA 0.201
Hrb98DE Heterogeneous nuclear ribonucleoprotein at 98DE 0.196
aur aurora 0.183
CG32458 CG32458 gene product from transcript CG32458-RA 0.173
Rbf Retinoblastoma-family protein 0.167
CG3363 CG3363 gene product from transcript CG3363-RB 0.166
Hdac3 Histone deacetylase 3 0.158
Rab9Db Rab GTPase 9Db 0.150
ymp yellow-emperor 0.135
dj don juan 0.135
SF1 Splicing factor 1 0.133
SmB Small ribonucleoprotein particle protein SmB 0.133
Su(var)205 Suppressor of variegation 205 0.133
Cdc37 CG12019 gene product from transcript CG12019-RA 0.133
5SrRNA:CR33355 5S ribosomal RNA 0.133
D1 D1 chromosomal protein 0.130
RpL7A Ribosomal protein L7A 0.128
RpS15Ab Ribosomal protein S15Ab 0.127
Grip84 gamma-tubulin ring protein 84 0.120
His4:CG33869 CG33869 gene product from transcript CG33869-RA 0.119
CG9642 CG9642 gene product from transcript CG9642-RA 0.117
Orc1 Origin recognition complex subunit 1 0.117
His4:CG33889 CG33889 gene product from transcript CG33889-RA 0.116
UbcD2 Ubiquitin conjugating enzyme 2 0.116
SelD Selenide,water dikinase 0.115
SuUR Suppressor of Under-Replication 0.115
Tctp Translationally controlled tumor protein 0.114
Su(var)2-10 Suppressor of variegation 2-10 0.112
CG1240 CG1240 gene product from transcript CG1240-RA 0.112
mor moira 0.109
CSN8 COP9 complex homolog subunit 8 0.109
CG8149 CG8149 gene product from transcript CG8149-RA 0.109
CG12316 CG12316 gene product from transcript CG12316-RB 0.107
CG30183 CG30183 gene product from transcript CG30183-RA 0.098
CG42308 CG42308 gene product from transcript CG42308-RA 0.098
CG32240 CG32240 gene product from transcript CG32240-RA 0.097
E(bx) Enhancer of bithorax 0.095
CG34244 CG34244 gene product from transcript CG34244-RA 0.094
glu gluon 0.093
Cenp-C CG31258 gene product from transcript CG31258-RA 0.093
Mcm10 Sensitized chromosome inheritance modifier 19 0.092
Cypl Cyclophilin-like 0.091
Caf1-180 CG12109 gene product from transcript CG12109-RB 0.090
Ulp1 CG12359 gene product from transcript CG12359-RA 0.089
Taf1 TBP-associated factor 1 0.083
CG9772 CG9772 gene product from transcript CG9772-RB 0.081
Rsf1 Repressor splicing factor 1 0.081
CG2926 CG2926 gene product from transcript CG2926-RA 0.080
Aos1 CG12276 gene product from transcript CG12276-RA 0.078
RpL40 Ribosomal protein L40 0.075
sti sticky 0.075
CG3330 CG3330 gene product from transcript CG3330-RA 0.073
Rcd7 Reduction in Cnn dots 7 0.068
Acf1 ATP-dependent chromatin assembly factor large subunit 0.064
CG7375 CG7375 gene product from transcript CG7375-RA 0.064
CG3680 CG3680 gene product from transcript CG3680-RA 0.063
Hel25E Helicase at 25E 0.062
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Homo sapiens
Name Description Probability Func Analog Organism
CBX5 chromobox homolog 5 1.000
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1.000
HIST1H2BG histone cluster 1, H2bg 1.000
ACTL6A actin-like 6A 1.000
SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 0.999
ARID1A AT rich interactive domain 1A (SWI-like) 0.999
CHAF1A chromatin assembly factor 1, subunit A (p150) 0.999
HIST1H3D histone cluster 1, H3d 0.998
HIST1H3B histone cluster 1, H3b 0.995
SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 0.994
HIST1H2AJ histone cluster 1, H2aj 0.992
YY1 YY1 transcription factor 0.991
HDAC2 histone deacetylase 2 0.990
HIST1H2BC histone cluster 1, H2bc 0.987
RUVBL1 RuvB-like 1 (E. coli) 0.979
H3F3A H3 histone, family 3A 0.975
HIST1H2BK histone cluster 1, H2bk 0.975
HDAC1 histone deacetylase 1 0.973
HIST1H3A histone cluster 1, H3a 0.970
SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 0.969
BAZ1B bromodomain adjacent to zinc finger domain, 1B 0.962
HIST1H4D histone cluster 1, H4d 0.949
HIST1H4B histone cluster 1, H4b 0.944
CBX1 chromobox homolog 1 0.943
ASF1B ASF1 anti-silencing function 1 homolog B (S. cerevisiae) 0.942
SUMO2 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) 0.935
MRFAP1 Morf4 family associated protein 1 0.931
PBRM1 polybromo 1 0.928
HIST1H4A histone cluster 1, H4a 0.927
HIST1H2AI histone cluster 1, H2ai 0.921
HIST1H2AM histone cluster 1, H2am 0.921
SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 0.917
ARID1B AT rich interactive domain 1B (SWI1-like) 0.896
RBBP4 retinoblastoma binding protein 4 0.890
HIST1H2AB histone cluster 1, H2ab 0.887
HIST2H2BE histone cluster 2, H2be 0.879
HIST1H1C histone cluster 1, H1c 0.868
HIST1H2AL histone cluster 1, H2al 0.861
CDAN1 congenital dyserythropoietic anemia, type I 0.843
SET SET nuclear oncogene 0.826
HIST1H2AE histone cluster 1, H2ae 0.807
HIST1H4F histone cluster 1, H4f 0.723
VPS72 vacuolar protein sorting 72 homolog (S. cerevisiae) 0.704
RBBP7 retinoblastoma binding protein 7 0.683
HIST1H2BD histone cluster 1, H2bd 0.673
HIST2H2AC histone cluster 2, H2ac 0.672
PTMA prothymosin, alpha 0.664
CENPA centromere protein A 0.615
HIST1H3G histone cluster 1, H3g 0.614
CHD4 chromodomain helicase DNA binding protein 4 0.609
HIST1H2BB histone cluster 1, H2bb 0.607
HIST1H2BM histone cluster 1, H2bm 0.603
POU3F2 POU class 3 homeobox 2 0.599
HIST1H4E histone cluster 1, H4e 0.598
HIST1H2BI histone cluster 1, H2bi 0.585
SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 0.578
CHAF1B chromatin assembly factor 1, subunit B (p60) 0.570
PAX3 paired box 3 0.538
UHRF1 ubiquitin-like with PHD and ring finger domains 1 0.521
HIST1H2BJ histone cluster 1, H2bj 0.516
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) 0.511
TRIM28 tripartite motif containing 28 0.503
DHX30 DEAH (Asp-Glu-Ala-His) box polypeptide 30 0.501
HIST1H3C histone cluster 1, H3c 0.485
NIPBL Nipped-B homolog (Drosophila) 0.477
ANP32B acidic (leucine-rich) nuclear phosphoprotein 32 family, member B 0.472
HIST4H4 histone cluster 4, H4 0.465
SSRP1 structure specific recognition protein 1 0.431
HIST1H4H histone cluster 1, H4h 0.413
HIST1H2BN histone cluster 1, H2bn 0.412
CARM1 coactivator-associated arginine methyltransferase 1 0.398
HIST1H2BO histone cluster 1, H2bo 0.378
HIST1H1D histone cluster 1, H1d 0.374
HIST1H3F histone cluster 1, H3f 0.367
HIST1H1E histone cluster 1, H1e 0.365
INO80E INO80 complex subunit E 0.358
HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 0.348
HMGB1 high mobility group box 1 0.336
SIN3A SIN3 homolog A, transcription regulator (yeast) 0.327
BAZ1A bromodomain adjacent to zinc finger domain, 1A 0.317
HIST1H4J histone cluster 1, H4j 0.302
CHD8 chromodomain helicase DNA binding protein 8 0.300
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 0.287
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.283
POU5F1 POU class 5 homeobox 1 0.280
HIST1H2AK histone cluster 1, H2ak 0.277
VEZF1 vascular endothelial zinc finger 1 0.275
MCM7 minichromosome maintenance complex component 7 0.274
HIST1H1B histone cluster 1, H1b 0.267
HIST1H4L histone cluster 1, H4l 0.262
BRD7 bromodomain containing 7 0.261
SUPT16H suppressor of Ty 16 homolog (S. cerevisiae) 0.260
DNMT1 DNA (cytosine-5-)-methyltransferase 1 0.246
HMGB2 high mobility group box 2 0.241
PRRC2C proline-rich coiled-coil 2C 0.235
UBTF upstream binding transcription factor, RNA polymerase I 0.230
NCOR1 nuclear receptor corepressor 1 0.226
CBX3 chromobox homolog 3 0.221
HIST1H4I histone cluster 1, H4i 0.216
RUVBL2 RuvB-like 2 (E. coli) 0.214
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Mus musculus
Name Description Probability Func Analog Organism
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Rattus norvegicus
Name Description Probability Func Analog Organism
Serbp1 Serpine1 mRNA binding protein 1 0.357
Npm1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.332
Mcm7 minichromosome maintenance complex component 7 0.244
Armcx1 armadillo repeat containing, X-linked 1 0.216
Blmh bleomycin hydrolase 0.206
Racgap1 Rac GTPase-activating protein 1 0.192
Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 0.174
Nap1l1 nucleosome assembly protein 1-like 1 0.171
Hnrnpf heterogeneous nuclear ribonucleoprotein F 0.162
Pcna proliferating cell nuclear antigen 0.155
Prps1 phosphoribosyl pyrophosphate synthetase 1 0.143
Sfpq splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) 0.141
Dek DEK oncogene 0.111
Hmgb1 high mobility group box 1 0.100
Ncl nucleolin 0.099
Chd4 chromodomain helicase DNA binding protein 4 0.092
Matr3 matrin 3 0.088
Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 0.074
Fam195b family with sequence similarity 195, member B 0.065
Fen1 flap structure-specific endonuclease 1 0.065
Cand1 cullin-associated and neddylation-dissociated 1 0.062
Atp1b3 ATPase, Na+/K+ transporting, beta 3 polypeptide 0.060
Rpa2 replication protein A2 0.055
Ssrp1 structure specific recognition protein 1 0.055
Smc1a structural maintenance of chromosomes 1A 0.054
Cnbp CCHC-type zinc finger, nucleic acid binding protein 0.054
Cdc20 cell division cycle 20 homolog (S. cerevisiae) 0.052
Ccnb1 cyclin B1 0.049
Chmp1a chromatin modifying protein 1A 0.047
Ubtf upstream binding transcription factor, RNA polymerase I 0.046
Fgf13 fibroblast growth factor 13 0.044
Ccdc97 coiled-coil domain containing 97 0.043
Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 0.041
Hnrpd heterogeneous nuclear ribonucleoprotein D 0.041
Ttc30b tetratricopeptide repeat domain 30B 0.040
Usp5 ubiquitin specific peptidase 5 (isopeptidase T) 0.040
Hnrnpu heterogeneous nuclear ribonucleoprotein U 0.040
Set SET nuclear oncogene 0.038
Ddx23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 0.037
Nap1l2 nucleosome assembly protein 1-like 2 0.035
Gdap1 ganglioside-induced differentiation-associated-protein 1 0.035
Ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 0.035
Dhx30 DEAH (Asp-Glu-Ala-His) box polypeptide 30 0.034
Hnrpm heterogeneous nuclear ribonucleoprotein M 0.034
Anp32e acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 0.033
Psma4 proteasome (prosome, macropain) subunit, alpha type 4 0.033
Cbfb core-binding factor, beta subunit 0.032
Mllt1 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 0.032
Phax phosphorylated adaptor for RNA export 0.031
Dtd1 D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae) 0.031
Kifc1 kinesin family member C1 0.031
Parp1 poly (ADP-ribose) polymerase 1 0.030
Mcm6 minichromosome maintenance complex component 6 0.029
Puf60 poly-U binding splicing factor 60 0.029
Sdcbp syndecan binding protein 0.027
Hmgn1 high-mobility group nucleosome binding domain 1 0.027
Dut deoxyuridine triphosphatase 0.027
Ss18 synovial sarcoma translocation, Chromosome 18 0.026
Dlgap5 discs, large (Drosophila) homolog-associated protein 5 0.026
Magee1 melanoma antigen, family E, 1 0.026
Hnrnpr heterogeneous nuclear ribonucleoprotein R 0.026
Vps26b vacuolar protein sorting 26 homolog B (S. pombe) 0.025
Nono non-POU domain containing, octamer-binding 0.025
Gprasp2 G protein-coupled receptor associated sorting protein 2 0.025
Supt16h suppressor of Ty 16 homolog (S. cerevisiae) 0.025
Hprt1 hypoxanthine phosphoribosyltransferase 1 0.025
Dnajc9 DnaJ (Hsp40) homolog, subfamily C, member 9 0.025
Fundc1 FUN14 domain containing 1 0.025
Hdlbp high density lipoprotein binding protein 0.024
Nudt11 nudix (nucleoside diphosphate linked moiety X)-type motif 11 0.024
Actr1a ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 0.024
Sf3b2 splicing factor 3b, subunit 2 0.024
Habp4 hyaluronan binding protein 4 0.023
Geft RhoA/RAC/CDC42 exchange factor 0.023
Psip1 PC4 and SFRS1 interacting protein 1 0.023
Pdap1 PDGFA associated protein 1 0.022
Nsun2 NOL1/NOP2/Sun domain family, member 2 0.022
Nap1l3 nucleosome assembly protein 1-like 3 0.022
Sfrs1 splicing factor, arginine/serine-rich 1 0.021
Tmem55b transmembrane protein 55B 0.021
Hk1 hexokinase 1 0.021
Flywch1 FLYWCH-type zinc finger 1 0.021
Melk maternal embryonic leucine zipper kinase 0.021
Plk1 polo-like kinase 1 (Drosophila) 0.021
Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein 0.020
Rbm6 RNA binding motif protein 6 0.020
Mcm5 minichromosome maintenance complex component 5 0.020
Tmpo thymopoietin 0.020
Wsb2 WD repeat and SOCS box-containing 2 0.020
Eif1ay eukaryotic translation initiation factor 1A, Y-linked 0.020
LOC683077 similar to praja1, RING-H2 motif containing 0.019
Hnrnpk heterogeneous nuclear ribonucleoprotein K 0.019
Tusc3 tumor suppressor candidate 3 0.019
Cab39 calcium binding protein 39 0.019
Tk1 thymidine kinase 1, soluble 0.019
Rad51ap1 RAD51 associated protein 1 0.019
Nup88 nucleoporin 88 0.018
Pttg1 pituitary tumor-transforming 1 0.018
Dnmt1 DNA (cytosine-5-)-methyltransferase 1 0.018
Pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) 0.018