IMP

Process View

Mus musculus

2 genes annotated in mouse

transcription coupled nucleotide excision repair

The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.

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Known genes in the process in mouse Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "transcription coupled nucleotide excision repair"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "transcription coupled nucleotide excision repair" (in gray)

Name	Description	Probability	Func Analog Organism
Srsf9	serine/arginine-rich splicing factor 9	0.674
Ssrp1	structure specific recognition protein 1	0.444
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	0.323
Ewsr1	Ewing sarcoma breakpoint region 1	0.282
Rnps1	ribonucleic acid binding protein S1	0.247
Srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.247
Prmt1	protein arginine N-methyltransferase 1	0.230
Anp32b	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	0.201
Trim28	tripartite motif-containing 28	0.177
Hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.157
Ppm1g	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	0.154
Ran	RAN, member RAS oncogene family	0.126
Eftud2	elongation factor Tu GTP binding domain containing 2	0.115
Thoc4	THO complex 4	0.114	Yeast
Tdg	thymine DNA glycosylase	0.104
Ptma	prothymosin alpha	0.093
Fbl	fibrillarin	0.089
Gar1	GAR1 ribonucleoprotein homolog (yeast)	0.082
Pabpn1	poly(A) binding protein, nuclear 1	0.079
Nup93	nucleoporin 93	0.066
Impdh2	inosine 5'-phosphate dehydrogenase 2	0.053
Acin1	apoptotic chromatin condensation inducer 1	0.053
Banf1	barrier to autointegration factor 1	0.052
Cct3	chaperonin containing Tcp1, subunit 3 (gamma)	0.051
Ppp4c	protein phosphatase 4, catalytic subunit	0.047
Srsf2	serine/arginine-rich splicing factor 2	0.047
Tuba1b	tubulin, alpha 1B	0.043
1500001M20Rik	RIKEN cDNA 1500001M20 gene	0.042
Rcc2	regulator of chromosome condensation 2	0.041
Ranbp1	RAN binding protein 1	0.040
Safb	scaffold attachment factor B	0.039
Cdk9	cyclin-dependent kinase 9 (CDC2-related kinase)	0.039
Sf3b3	splicing factor 3b, subunit 3	0.038
U2af1	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	0.037
Set	SET nuclear oncogene	0.035
Eif3g	eukaryotic translation initiation factor 3, subunit G	0.035
Mcm7	minichromosome maintenance deficient 7 (S. cerevisiae)	0.035
Cct2	chaperonin containing Tcp1, subunit 2 (beta)	0.034
Hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.033
Refbp2	RNA and export factor binding protein 2	0.032	Yeast
A430005L14Rik	RIKEN cDNA A430005L14 gene	0.032
Senp3	SUMO/sentrin specific peptidase 3	0.032
Apex1	apurinic/apyrimidinic endonuclease 1	0.031
Gtf2f1	general transcription factor IIF, polypeptide 1	0.029
Eif4a3	eukaryotic translation initiation factor 4A3	0.029
Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.029
Lsm2	LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.029
Nup107	nucleoporin 107	0.027
Srsf4	serine/arginine-rich splicing factor 4	0.027
Ddx54	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	0.026
Ncl	nucleolin	0.026
Puf60	poly-U binding splicing factor 60	0.025
Ipo5	importin 5	0.024
Dnmt1	DNA methyltransferase (cytosine-5) 1	0.024
Rbm14	RNA binding motif protein 14	0.023
Nup62	nucleoporin 62	0.023
Tbcb	tubulin folding cofactor B	0.023
Cks1b	CDC28 protein kinase 1b	0.023
Cdk2ap1	CDK2 (cyclin-dependent kinase 2)-associated protein 1	0.022
Cpsf1	cleavage and polyadenylation specific factor 1	0.022
Ctps	cytidine 5'-triphosphate synthase	0.022
Nxt1	NTF2-related export protein 1	0.021
Tubb5	tubulin, beta 5	0.021
Ncbp1	nuclear cap binding protein subunit 1	0.021
Prpf8	pre-mRNA processing factor 8	0.021
Cdk4	cyclin-dependent kinase 4	0.020
Hn1	hematological and neurological expressed sequence 1	0.019
Cdca4	cell division cycle associated 4	0.018
Dtymk	deoxythymidylate kinase	0.018
Taf5l	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	0.018
Xab2	XPA binding protein 2	0.018
2700094K13Rik	RIKEN cDNA 2700094K13 gene	0.017
Enoph1	enolase-phosphatase 1	0.017
Nop56	NOP56 ribonucleoprotein homolog (yeast)	0.017
Snrpa	small nuclear ribonucleoprotein polypeptide A	0.017
U2af2	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	0.016
Sltm	SAFB-like, transcription modulator	0.016
Qrich1	glutamine-rich 1	0.016
Ppan	peter pan homolog (Drosophila)	0.016
Odc1	ornithine decarboxylase, structural 1	0.016
Sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.016
H2afy	H2A histone family, member Y	0.015
Ppp1r8	protein phosphatase 1, regulatory (inhibitor) subunit 8	0.015
2310036O22Rik	RIKEN cDNA 2310036O22 gene	0.015
Eif3c	eukaryotic translation initiation factor 3, subunit C	0.015
Brd2	bromodomain containing 2	0.015
Rbm10	RNA binding motif protein 10	0.015
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	0.014
Cherp	calcium homeostasis endoplasmic reticulum protein	0.014
Pprc1	peroxisome proliferative activated receptor, gamma, coactivator-related 1	0.014
Noc4l	nucleolar complex associated 4 homolog (S. cerevisiae)	0.014
Cox4nb	COX4 neighbor	0.014
Siva1	SIVA1, apoptosis-inducing factor	0.014
Rbmxrt	RNA binding motif protein, X chromosome retrogene	0.014
Dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16	0.014
Fam192a	family with sequence similarity 192, member A	0.014
Pa2g4	proliferation-associated 2G4	0.014
Nxf1	nuclear RNA export factor 1 homolog (S. cerevisiae)	0.014
Gtf3c2	general transcription factor IIIC, polypeptide 2, beta	0.014
Pcbp1	poly(rC) binding protein 1	0.013
Usp39	ubiquitin specific peptidase 39	0.013
Nup85	nucleoporin 85	0.013
Lyar	Ly1 antibody reactive clone	0.013
Tcof1	Treacher Collins Franceschetti syndrome 1, homolog	0.013
Nfyc	nuclear transcription factor-Y gamma	0.013
Hnrnpl	heterogeneous nuclear ribonucleoprotein L	0.013
Fen1	flap structure specific endonuclease 1	0.013
Exosc10	exosome component 10	0.012
Rnf8	ring finger protein 8	0.012
Anapc5	anaphase-promoting complex subunit 5	0.012
Rrp1b	ribosomal RNA processing 1 homolog B (S. cerevisiae)	0.012
Rsl24d1	ribosomal L24 domain containing 1	0.012
Snrpb	small nuclear ribonucleoprotein B	0.012
Rpa1	replication protein A1	0.012
Yeats4	YEATS domain containing 4	0.012
Psat1	phosphoserine aminotransferase 1	0.012
Psmc4	proteasome (prosome, macropain) 26S subunit, ATPase, 4	0.011
Kdm2b	lysine (K)-specific demethylase 2B	0.011
Pom121	nuclear pore membrane protein 121	0.011
Sf3a1	splicing factor 3a, subunit 1	0.011
Prpf6	PRP6 pre-mRNA splicing factor 6 homolog (yeast)	0.011
Pgd	phosphogluconate dehydrogenase	0.011
Ctbp1	C-terminal binding protein 1	0.011
Xpo6	exportin 6	0.011
Hnrnpa0	heterogeneous nuclear ribonucleoprotein A0	0.011
Isg20l2	interferon stimulated exonuclease gene 20-like 2	0.011
Bms1	BMS1 homolog, ribosome assembly protein (yeast)	0.011
Ppp4r1	protein phosphatase 4, regulatory subunit 1	0.011
Elp2	elongation protein 2 homolog (S. cerevisiae)	0.011
Pcbp2	poly(rC) binding protein 2	0.010
Gm5806	predicted gene 5806	0.010
Khdrbs1	KH domain containing, RNA binding, signal transduction associated 1	0.010
Ubtf	upstream binding transcription factor, RNA polymerase I	0.010
Thoc3	THO complex 3	0.010
Rdbp	RD RNA-binding protein	0.010
2410002F23Rik	RIKEN cDNA 2410002F23 gene	0.010