IMP

Process View

Saccharomyces cerevisiae

43 genes annotated in yeast

dna geometric change

The process in which a transformation is induced in the geometry of a DNA double helix, resulting in a change in twist, writhe, or both, but with no change in linking number. Includes the unwinding of double-stranded DNA by helicases.

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In addition to gene-name show these genes:

Known genes in the process in yeast Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "dna geometric change"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "dna geometric change" (in gray)

Name	Description	Probability	Func Analog Organism
MCM4	Mcm4p	0.900
PSF2	Psf2p	0.798
MCM2	Mcm2p	0.729
MCM6	Mcm6p	0.570
CTF4	Ctf4p	0.568
MCM5	Mcm5p	0.524
SLD5	Sld5p	0.484	Fly
RFA1	Rfa1p	0.467
MCM3	Mcm3p	0.449
RFA2	Rfa2p	0.442
MEC1	Mec1p	0.369
MCM10	Mcm10p	0.345
MCM7	Mcm7p	0.341
RAD53	Rad53p	0.273
DNA2	Dna2p	0.220
RAD52	Rad52p	0.157
SLD2	Sld2p	0.133
YOR060C	hypothetical protein	0.131
RAD23	Rad23p	0.110
RAD50	Rad50p	0.107
TOP3	Top3p	0.103
PSP2	Psp2p	0.101
SMC6	Smc6p	0.096
TAH11	Tah11p	0.093
SMC4	Smc4p	0.093
BRN1	Brn1p	0.087
RAD5	Rad5p	0.071
CDC45	Cdc45p	0.068	Fly
SMC2	Smc2p	0.064
ALG14	Alg14p	0.064
SMC3	Smc3p	0.063
RAD51	Rad51p	0.063	Human
MSH3	Msh3p	0.060
RFA3	Rfa3p	0.059
IRR1	Irr1p	0.057
IES1	Ies1p	0.055
CSM3	Csm3p	0.054
RMI1	Rmi1p	0.054
YCG1	Ycg1p	0.053
UBP1	Ubp1p	0.050
PSF3	Psf3p	0.048	Fly
RAD59	Rad59p	0.046
TOF1	Tof1p	0.045
YDL156W	hypothetical protein	0.044
ECO1	Eco1p	0.039
MMS22	Mms22p	0.037
INO80	Ino80p	0.037
PRS2	Prs2p	0.037
EST2	Est2p	0.037
PSF1	Psf1p	0.036	Fly
SRD1	Srd1p	0.035
MRC1	Mrc1p	0.034
MSA2	Msa2p	0.033
SGS1	Sgs1p	0.032
MOT1	Mot1p	0.031
IRC5	Irc5p	0.030
LEU2	Leu2p	0.029
HST3	Hst3p	0.029
RAD24	Rad24p	0.029
CDC6	Cdc6p	0.028
SHE1	She1p	0.028
YLR264C-A	hypothetical protein	0.028
ESP1	Esp1p	0.027
YLR162W	hypothetical protein	0.027
TEL1	Tel1p	0.027
PDC2	Pdc2p	0.027
DSS1	Dss1p	0.026
MER1	Mer1p	0.026
DPB11	Dpb11p	0.026
PRI2	Pri2p	0.026
SPC97	Spc97p	0.026
YOL038C-A	hypothetical protein	0.025
SPC105	Spc105p	0.025
DDC1	Ddc1p	0.025
SEN54	Sen54p	0.025
URA3	Ura3p	0.025
FAA2	Faa2p	0.025
MRH4	Mrh4p	0.024	Yeast
YIL151C	hypothetical protein	0.024
RKM1	Rkm1p	0.024
POL2	Pol2p	0.024
YKR023W	hypothetical protein	0.024
KEM1	Kem1p	0.024
POL1	Pol1p	0.024
RFC1	Rfc1p	0.024
YNL234W	hypothetical protein	0.024
PEX25	Pex25p	0.024
LIF1	Lif1p	0.024
YBR235W	hypothetical protein	0.023
ARG8	Arg8p	0.023
MPT5	Mpt5p	0.023
ATP6	Atp6p	0.023
SPO22	Spo22p	0.023
YAR068W	hypothetical protein	0.023
CUP1-1	Cup1-1p	0.022
STU1	Stu1p	0.022
SPC98	Spc98p	0.022
BSC1	Bsc1p	0.022
RDH54	Rdh54p	0.022
YBR013C	hypothetical protein	0.022
YIR035C	hypothetical protein	0.021
EXO1	Exo1p	0.021
ARP10	Arp10p	0.021
YLR042C	hypothetical protein	0.021
COS12	Cos12p	0.021
HPF1	Hpf1p	0.021
IML1	Iml1p	0.021
SPL2	Spl2p	0.021
YPR157W	hypothetical protein	0.020
DCG1	Dcg1p	0.020
HXT3	Hxt3p	0.020
FMP25	Fmp25p	0.020
AUA1	Aua1p	0.020
SEN34	Sen34p	0.020
HOS1	Hos1p	0.020
IZH4	Izh4p	0.019
BNA4	Bna4p	0.019
CPD1	Cpd1p	0.019
ARP9	Arp9p	0.019
MSS116	Mss116p	0.019
RSN1	Rsn1p	0.019
FMT1	Fmt1p	0.019
YOL013W-A	hypothetical protein	0.019
YBL044W	hypothetical protein	0.019
CST9	Cst9p	0.018
MSH5	Msh5p	0.018
EST1	Est1p	0.018
NGL2	Ngl2p	0.018
AQY2	Aqy2p	0.018
SRS2	Srs2p	0.018
BDS1	Bds1p	0.018
MET8	Met8p	0.018
OCA5	Oca5p	0.018
MKK1	Mkk1p	0.018
YEL077C	hypothetical protein	0.018
UPS3	Ups3p	0.018
MF(ALPHA)2	Mf(alpha)2p	0.018
YGR071C	hypothetical protein	0.018
TSC3	Tsc3p	0.017
ADH2	Adh2p	0.017
AQR1	Aqr1p	0.017
SFT1	Sft1p	0.017
AAD15	Aad15p	0.017
YHL026C	hypothetical protein	0.017
RTT105	Rtt105p	0.017
ENA5	Ena5p	0.017
SLD3	Sld3p	0.017
SWC7	Swc7p	0.017
YLL066C	hypothetical protein	0.017
BIO2	Bio2p	0.017
YPR096C	hypothetical protein	0.017
YBR184W	hypothetical protein	0.017
SSP1	Ssp1p	0.017
SRX1	Srx1p	0.017
CHA1	Cha1p	0.017
YJL181W	hypothetical protein	0.017
DIC1	Dic1p	0.017
KTR5	Ktr5p	0.017
CTS1	Cts1p	0.016
YAR066W	hypothetical protein	0.016
DUR1,2	Dur1,2p	0.016
YAL064W	hypothetical protein	0.016
SWI1	Swi1p	0.016
YDR222W	hypothetical protein	0.016
DBF4	Dbf4p	0.016
YAL037C-A	hypothetical protein	0.016
SPS4	Sps4p	0.016
HOR2	Hor2p	0.016
RNP1	Rnp1p	0.016
OPT2	Opt2p	0.016
MFA2	Mfa2p	0.016
POL3	Pol3p	0.016
YGR266W	hypothetical protein	0.016
TOR2	Tor2p	0.016
RED1	Red1p	0.016
YML003W	hypothetical protein	0.016
KAP120	Kap120p	0.016
RTT107	Rtt107p	0.016
RAD54	Rad54p	0.016
UBR1	Ubr1p	0.016
SCM4	Scm4p	0.016
YMR317W	hypothetical protein	0.015
REV7	Rev7p	0.015
YPL067C	hypothetical protein	0.015
SUA7	Sua7p	0.015
SIZ1	Siz1p	0.015
PTR2	Ptr2p	0.015
YLL053C	hypothetical protein	0.015
YLR040C	hypothetical protein	0.015
RAD2	Rad2p	0.015
YGL006W-A	hypothetical protein	0.015
RAD18	Rad18p	0.015
YLR126C	hypothetical protein	0.015
PHO11	Pho11p	0.015
YMR244W	hypothetical protein	0.015
YNL067W-B	hypothetical protein	0.015
SIT1	Sit1p	0.015
SAE2	Sae2p	0.015
RNH70	Rnh70p	0.015
YIR042C	hypothetical protein	0.015
SRO77	Sro77p	0.015
NBL1	Nbl1p	0.015
YBL029W	hypothetical protein	0.015
YLR412C-A	hypothetical protein	0.015
YER186C	hypothetical protein	0.015
NRG2	Nrg2p	0.015
YCH1	Ych1p	0.015
ORC4	Orc4p	0.015
AAD6	Aad6p	0.015
TIR3	Tir3p	0.015
GNA1	Gna1p	0.015
RRN5	Rrn5p	0.015
YDR034C-A	hypothetical protein	0.014
NUP157	Nup157p	0.014
YLF2	Ylf2p	0.014
RIM2	Rim2p	0.014
DSE3	Dse3p	0.014
SSL1	Ssl1p	0.014
YKR075C	hypothetical protein	0.014
YNL033W	hypothetical protein	0.014
YPR027C	hypothetical protein	0.014
DIF1	Dif1p	0.014
CHL1	Chl1p	0.014
MUS81	Mus81p	0.014
YCR102C	hypothetical protein	0.014
YKR041W	hypothetical protein	0.014
KEL1	Kel1p	0.014
YJR120W	hypothetical protein	0.014
YML100W-A	hypothetical protein	0.014
MF(ALPHA)1	Mf(alpha)1p	0.014
RLF2	Rlf2p	0.014
REE1	Ree1p	0.014
YDL012C	hypothetical protein	0.014
FCY21	Fcy21p	0.014
YJL107C	hypothetical protein	0.014
RRT5	Rrt5p	0.014
BIO5	Bio5p	0.014
YHR035W	hypothetical protein	0.014
SET4	Set4p	0.014
ZPS1	Zps1p	0.014
OPT1	Opt1p	0.014
MAM1	Mam1p	0.014
STB1	Stb1p	0.014
PTP3	Ptp3p	0.014
YCS4	Ycs4p	0.013
TFB4	Tfb4p	0.013
PCL9	Pcl9p	0.013
YPL272C	hypothetical protein	0.013
FET4	Fet4p	0.013
SAM3	Sam3p	0.013
NEO1	Neo1p	0.013
RNR3	Rnr3p	0.013
FCY22	Fcy22p	0.013
CBP1	Cbp1p	0.013
YJR030C	hypothetical protein	0.013
YOR387C	hypothetical protein	0.013
SAP190	Sap190p	0.013
LCL1	Lcl1p	0.013
SNU23	Snu23p	0.013
SRT1	Srt1p	0.013
YKR045C	hypothetical protein	0.013
YJL160C	hypothetical protein	0.013
SEO1	Seo1p	0.013
ARO10	Aro10p	0.013
TFA1	Tfa1p	0.013
YNL018C	hypothetical protein	0.013
DCC1	Dcc1p	0.013
KNH1	Knh1p	0.013
FIR1	Fir1p	0.013
FIT2	Fit2p	0.013
YAT1	Yat1p	0.013
IMA2	Ima2p	0.013
BYE1	Bye1p	0.013
YGL235W	hypothetical protein	0.013
HO	Hop	0.013
SBE22	Sbe22p	0.013
YNR062C	hypothetical protein	0.013
PHM6	Phm6p	0.013
YNL162W-A	hypothetical protein	0.013
DAS2	Das2p	0.013
GIS3	Gis3p	0.013
SLS1	Sls1p	0.013
IMA5	Ima5p	0.013
YCL001W-B	hypothetical protein	0.013
CTF3	Ctf3p	0.013
APN1	Apn1p	0.013
YLR281C	hypothetical protein	0.013
POX1	Pox1p	0.013
TYE7	Tye7p	0.013
GSH1	Gsh1p	0.012
YAP7	Yap7p	0.012
FRE4	Fre4p	0.012
YNR063W	hypothetical protein	0.012
YOR316C-A	hypothetical protein	0.012
SLI1	Sli1p	0.012
PSY4	Psy4p	0.012
ICS3	Ics3p	0.012
YSR3	Ysr3p	0.012
YHR177W	hypothetical protein	0.012
CLB5	Clb5p	0.012
YHK8	Yhk8p	0.012
YDR109C	hypothetical protein	0.012
FUR4	Fur4p	0.012
DUN1	Dun1p	0.012
CAB2	Cab2p	0.012
AZF1	Azf1p	0.012
ZRT1	Zrt1p	0.012
YKL070W	hypothetical protein	0.012
MMS4	Mms4p	0.012
LRO1	Lro1p	0.012
YLR342W-A	hypothetical protein	0.012
GLT1	Glt1p	0.012
SGE1	Sge1p	0.012
TIP1	Tip1p	0.012
YGR035C	hypothetical protein	0.012
POL31	Pol31p	0.012
POB3	Pob3p	0.012
WSC4	Wsc4p	0.012
SWM2	Swm2p	0.012
YKL106C-A	hypothetical protein	0.012
PRM7	Prm7p	0.012
DOP1	Dop1p	0.012
SOR2	Sor2p	0.012
YNL058C	hypothetical protein	0.012
BAT2	Bat2p	0.012
YMR130W	hypothetical protein	0.012
YBR071W	hypothetical protein	0.012
MTO1	Mto1p	0.012
BEM3	Bem3p	0.012
CAF130	Caf130p	0.012
CDC43	Cdc43p	0.012
RAD9	Rad9p	0.012
GDS1	Gds1p	0.012
DOG1	Dog1p	0.012
SAK1	Sak1p	0.012
SPC42	Spc42p	0.012
HUG1	Hug1p	0.012
YHR033W	hypothetical protein	0.012
YER064C	hypothetical protein	0.012
TRI1	Tri1p	0.012
MTG2	Mtg2p	0.012
PMD1	Pmd1p	0.012
MPH3	Mph3p	0.012
FRE7	Fre7p	0.012
BI4	Bi4p	0.012
AIF1	Aif1p	0.012
SCY1	Scy1p	0.012
YNL034W	hypothetical protein	0.012
CTM1	Ctm1p	0.012
HAP1	Hap1p	0.012
YER175W-A	hypothetical protein	0.012
SPO74	Spo74p	0.012
YPL216W	hypothetical protein	0.012
YMR122W-A	hypothetical protein	0.012
PMA2	Pma2p	0.012
KSH1	Ksh1p	0.012
YPR159C-A	hypothetical protein	0.012
RTS2	Rts2p	0.012
YDR444W	hypothetical protein	0.012
MIG2	Mig2p	0.012
BIR1	Bir1p	0.012
TAO3	Tao3p	0.012
SUT1	Sut1p	0.012
MEI4	Mei4p	0.012
MMP1	Mmp1p	0.012
RGD2	Rgd2p	0.012
FRE5	Fre5p	0.011
RHB1	Rhb1p	0.011
GPD2	Gpd2p	0.011
ALT2	Alt2p	0.011
TAF8	Taf8p	0.011
YJL213W	hypothetical protein	0.011
YDR182W-A	hypothetical protein	0.011
YDL129W	hypothetical protein	0.011
CTR3	Ctr3p	0.011
RMD8	Rmd8p	0.011
YFL051C	hypothetical protein	0.011
SOV1	Sov1p	0.011
PAN2	Pan2p	0.011
RPI1	Rpi1p	0.011
BIT61	Bit61p	0.011
UGO1	Ugo1p	0.011
YMR001C-A	hypothetical protein	0.011
RMD9	Rmd9p	0.011
YOL097W-A	hypothetical protein	0.011
YOR390W	hypothetical protein	0.011
YER140W	hypothetical protein	0.011
TFC6	Tfc6p	0.011
YEA6	Yea6p	0.011
PCH2	Pch2p	0.011
YNL097C-B	hypothetical protein	0.011
MSH6	Msh6p	0.011
DAK2	Dak2p	0.011
YGR017W	hypothetical protein	0.011
CSF1	Csf1p	0.011
MMS1	Mms1p	0.011
YKL068W-A	hypothetical protein	0.011
YLR406C-A	hypothetical protein	0.011
BUL1	Bul1p	0.011
YKL187C	hypothetical protein	0.011
GFA1	Gfa1p	0.011
YJL028W	hypothetical protein	0.011
YJR115W	hypothetical protein	0.011
ATR1	Atr1p	0.011
TIR1	Tir1p	0.011
GAL2	Gal2p	0.011
ISU2	Isu2p	0.011
FOB1	Fob1p	0.011
RNR2	Rnr2p	0.011
YJL218W	hypothetical protein	0.011
YDR524W-C	hypothetical protein	0.011
YBL010C	hypothetical protein	0.011
ENB1	Enb1p	0.011
RPH1	Rph1p	0.011
SCC2	Scc2p	0.011
YGR126W	hypothetical protein	0.011
HIR1	Hir1p	0.011
PRP31	Prp31p	0.011
ABM1	Abm1p	0.011
PCT1	Pct1p	0.011
ECM22	Ecm22p	0.011
STE6	Ste6p	0.011
YBL104C	hypothetical protein	0.011
VBA5	Vba5p	0.011
ARE2	Are2p	0.011
YIL046W-A	hypothetical protein	0.011
MGS1	Mgs1p	0.011
SLN1	Sln1p	0.011
YSF3	Ysf3p	0.011
ARP4	Arp4p	0.011
CDC9	Cdc9p	0.011
YFR035C	hypothetical protein	0.011
YDR089W	hypothetical protein	0.011
MNN1	Mnn1p	0.011
YLR108C	hypothetical protein	0.011
RNH203	Rnh203p	0.011
HOP2	Hop2p	0.011
MRH1	Mrh1p	0.011
YOR268C	hypothetical protein	0.011
GCV2	Gcv2p	0.011
YJL047C-A	hypothetical protein	0.011
YBR219C	hypothetical protein	0.011
SAR1	Sar1p	0.010
YER085C	hypothetical protein	0.010
YPR108W-A	hypothetical protein	0.010
BIO4	Bio4p	0.010
YAR029W	hypothetical protein	0.010
ERT1	Ert1p	0.010
TIR2	Tir2p	0.010
YOR012W	hypothetical protein	0.010
YLR460C	hypothetical protein	0.010
NFT1	Nft1p	0.010
OCT1	Oct1p	0.010
YHR078W	hypothetical protein	0.010
YLR012C	hypothetical protein	0.010
CUE4	Cue4p	0.010
SCT1	Sct1p	0.010
PBP2	Pbp2p	0.010
ARR2	Arr2p	0.010
YDR114C	hypothetical protein	0.010
AZR1	Azr1p	0.010
YNL146C-A	hypothetical protein	0.010
HXT8	Hxt8p	0.010
DAD3	Dad3p	0.010
MDJ2	Mdj2p	0.010
CAB3	Cab3p	0.010
YNL277W-A	hypothetical protein	0.010
TOF2	Tof2p	0.010
SWT1	Swt1p	0.010
SLX5	Slx5p	0.010
ADH7	Adh7p	0.010
NOP10	Nop10p	0.010
BLM10	Blm10p	0.010
YHB1	Yhb1p	0.010
YLR307C-A	hypothetical protein	0.010
YBL039W-B	hypothetical protein	0.010
YPR015C	hypothetical protein	0.010
DAN1	Dan1p	0.010
BAP3	Bap3p	0.010
YMR279C	hypothetical protein	0.010
YOL086W-A	hypothetical protein	0.010
YPL152W-A	hypothetical protein	0.010
YDL186W	hypothetical protein	0.010