IMP

Process View

Mus musculus

4 genes annotated in mouse

nucleosome positioning

Ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another.

Loading network...

In addition to gene-name show these genes:

Known genes in the process in mouse Include functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "nucleosome positioning"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "nucleosome positioning" (in gray)

Name	Description	Probability	Func Analog Organism
Smarcc1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	0.902
Arid1b	AT rich interactive domain 1B (SWI-like)	0.775
Arid1a	AT rich interactive domain 1A (SWI-like)	0.739
H3f3a	H3 histone, family 3A	0.669
Mtf2	metal response element binding transcription factor 2	0.655
Pou5f1	POU domain, class 5, transcription factor 1	0.521
Ezh2	enhancer of zeste homolog 2 (Drosophila)	0.477
Suz12	suppressor of zeste 12 homolog (Drosophila)	0.366
Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.343	Yeast
Hist1h2bc	histone cluster 1, H2bc	0.314
Baz1a	bromodomain adjacent to zinc finger domain 1A	0.312	Fly
Eed	embryonic ectoderm development	0.180
Baz1b	bromodomain adjacent to zinc finger domain, 1B	0.131
Nono	non-POU-domain-containing, octamer binding protein	0.117
Smarcc2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	0.114
Rnf2	ring finger protein 2	0.110
Usp7	ubiquitin specific peptidase 7	0.106
Hmgb1	high mobility group box 1	0.103
Setx	senataxin	0.093
Rbbp4	retinoblastoma binding protein 4	0.083	Fly
Hdac2	histone deacetylase 2	0.064
Ilf3	interleukin enhancer binding factor 3	0.062
Jarid2	jumonji, AT rich interactive domain 2	0.058
Arid2	AT rich interactive domain 2 (ARID, RFX-like)	0.058
Crebbp	CREB binding protein	0.057
Brd4	bromodomain containing 4	0.053
Yy1	YY1 transcription factor	0.050
Aebp2	AE binding protein 2	0.048
Cbll1	Casitas B-lineage lymphoma-like 1	0.047
Chd4	chromodomain helicase DNA binding protein 4	0.041
Hist1h1b	histone cluster 1, H1b	0.041
Smc1a	structural maintenance of chromosomes 1A	0.039
Cbx3	chromobox homolog 3 (Drosophila HP1 gamma)	0.039
H2afz	H2A histone family, member Z	0.037
Smarcb1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	0.035
Ptges3	prostaglandin E synthase 3 (cytosolic)	0.034
Sin3a	transcriptional regulator, SIN3A (yeast)	0.033
Nipbl	Nipped-B homolog (Drosophila)	0.032
Rfx7	regulatory factor X, 7	0.029
Creb1	cAMP responsive element binding protein 1	0.028
Mta1	metastasis associated 1	0.028
Bptf	bromodomain PHD finger transcription factor	0.026
Ppp1cc	protein phosphatase 1, catalytic subunit, gamma isoform	0.025
Wdr82	WD repeat domain containing 82	0.024
Stk38	serine/threonine kinase 38	0.024
Hist2h2ab	histone cluster 2, H2ab	0.023
Rybp	RING1 and YY1 binding protein	0.022
Mll3	myeloid/lymphoid or mixed-lineage leukemia 3	0.022
Srrm1	serine/arginine repetitive matrix 1	0.022
Sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.022
Ndn	necdin	0.022
Fabp9	fatty acid binding protein 9, testis	0.021
Pum1	pumilio 1 (Drosophila)	0.021
Ubtf	upstream binding transcription factor, RNA polymerase I	0.019
Ankrd12	ankyrin repeat domain 12	0.019
Supt16h	suppressor of Ty 16 homolog (S. cerevisiae)	0.019
Cebpz	CCAAT/enhancer binding protein zeta	0.018
Chd8	chromodomain helicase DNA binding protein 8	0.018
Ddx6	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	0.017
Hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.017
Insrr	insulin receptor-related receptor	0.016
Numa1	nuclear mitotic apparatus protein 1	0.016
Msl2	male-specific lethal 2 homolog (Drosophila)	0.016
Hist1h2bb	histone cluster 1, H2bb	0.016
Pnliprp2	pancreatic lipase-related protein 2	0.015
Hmgb4	high-mobility group box 4	0.015
Mecp2	methyl CpG binding protein 2	0.015
Rictor	RPTOR independent companion of MTOR, complex 2	0.015
Safb	scaffold attachment factor B	0.015
Defa6	defensin, alpha, 6	0.015
Hdac1	histone deacetylase 1	0.015
Ppp2r5e	protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	0.015
Slbp	stem-loop binding protein	0.014
Prm2	protamine 2	0.014
Dnmt3a	DNA methyltransferase 3A	0.014
Anp32e	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.014
Mga	MAX gene associated	0.013
Ctcf	CCCTC-binding factor	0.013	Human
Trrap	transformation/transcription domain-associated protein	0.013
Enam	enamelin	0.013
Thoc2	THO complex 2	0.013
Ctbp2	C-terminal binding protein 2	0.013
Smarca2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	0.013	Yeast
Srrm2	serine/arginine repetitive matrix 2	0.012
Sf3b2	splicing factor 3b, subunit 2	0.012
Oc90	otoconin 90	0.012
Smarcd3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	0.012
Pcbp2	poly(rC) binding protein 2	0.012
Smarce1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	0.012
Pcna	proliferating cell nuclear antigen	0.012
Tnp1	transition protein 1	0.012
Wtap	Wilms' tumour 1-associating protein	0.012
Hist1h3g	histone cluster 1, H3g	0.012
Scara3	scavenger receptor class A, member 3	0.012
L3mbtl2	l(3)mbt-like 2 (Drosophila)	0.012
Hist1h1d	histone cluster 1, H1d	0.012
Adra1b	adrenergic receptor, alpha 1b	0.012
Ptma	prothymosin alpha	0.012
Ivl	involucrin	0.011
Ldhc	lactate dehydrogenase C	0.011
Crtam	cytotoxic and regulatory T cell molecule	0.011
Tnp2	transition protein 2	0.011
Smarcd1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	0.010