IMP

Process View

Danio rerio

3 genes annotated in zebrafish

basement membrane assembly

The aggregation, arrangement and bonding together of a set of components to form a basement membrane, a part of the extracellular region that consists of a thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "basement membrane assembly"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "basement membrane assembly" (in gray)

Name	Description	Probability	Func Analog Organism
lamb1a	laminin, beta 1a	0.998
col9a2	procollagen, type IX, alpha 2	0.984	Zebrafish
lamc1	laminin, gamma 1	0.937	Zebrafish Fly
lect1	leukocyte cell derived chemotaxin 1	0.917
col9a3	collagen, type IX, alpha 3	0.916	Zebrafish
lama2	laminin, alpha 2	0.760
col9a1	collagen, type IX, alpha 1	0.559	Zebrafish
lama1	laminin, alpha 1	0.503	Zebrafish
dmd	dystrophin	0.362
shha	sonic hedgehog a	0.326
dag1	dystroglycan 1	0.318
frem3	Fras1 related extracellular matrix 3	0.179
lama5	laminin, alpha 5	0.171
epyc	epiphycan	0.161
pdgfrl	platelet-derived growth factor receptor-like	0.118
cmn	calymmin	0.109
myhz1.1	myosin, heavy polypeptide 1.1, skeletal muscle	0.105
lamb2	laminin, beta 2 (laminin S)	0.105
matn4	matrilin 4	0.101
copb2	coatomer protein complex, subunit beta 2	0.096
col1a1a	collagen, type I, alpha 1a	0.060
sars	seryl-tRNA synthetase	0.059
rad21	RAD21 homolog (S. pombe)	0.057
plod3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	0.057	Mouse
chrna1	cholinergic receptor, nicotinic, alpha polypeptide 1	0.056
unc45b	unc-45 homolog B (C. elegans)	0.055
sparc	secreted acidic cysteine rich glycoprotein	0.053
ssr3	signal sequence receptor, gamma	0.052
col18a1	collagen type XVIII, alpha 1	0.051
wu:fc18d04	wu:fc18d04	0.048
col1a2	collagen, type I, alpha 2	0.047
msxd	muscle segment homeobox D	0.045
si:dkeyp-113d7.4	si:dkeyp-113d7.4	0.044
calua	calumenin a	0.041
atp1a1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	0.040
chrnd	cholinergic receptor, nicotinic, delta polypeptide	0.039
copa	coatomer protein complex, subunit alpha	0.039
zgc:77702	zgc:77702	0.039
hsp90a.1	heat shock protein 90-alpha 1	0.037
cdh2	cadherin 2, neuronal	0.037
col4a5	collagen, type IV, alpha 5 (Alport syndrome)	0.036
nkx3.2	NK3 homeobox 2	0.036
fbn2b	fibrillin 2b	0.036
atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	0.034
col10a1	collagen, type X, alpha 1	0.033
disc1	disrupted in schizophrenia 1	0.033
col4a6	collagen, type IV, alpha 6	0.032
lamb4	laminin, beta 4	0.030	Zebrafish
nog3	noggin 3	0.030
col11a2	collagen type XI alpha-2	0.029
crb2a	crumbs homolog 2a	0.028
flncb	filamin C, gamma b (actin binding protein 280)	0.028
acta1a	actin, alpha 1a, skeletal muscle	0.026
hapln3	hyaluronan and proteoglycan link protein 3	0.026
hhip	hedgehog interacting protein	0.026
ahcy	S-adenosylhomocysteine hydrolase	0.026
col11a1a	collagen, type XI, alpha 1a	0.025
crispld1b	cysteine-rich secretory protein LCCL domain containing 1b	0.024
col5a3b	collagen type V alpha-3b	0.024
col2a1a	collagen type II, alpha-1a	0.024
col27a1a	collagen, type XXVII, alpha 1a	0.023
gdf6a	growth differentiation factor 6a	0.022
med12	mediator of RNA polymerase II transcription, subunit 12 homolog	0.020
slc45a2	solute carrier family 45, member 2	0.020
lamc3	laminin, gamma 3	0.019
lama4	laminin, alpha 4	0.019
and2	actinodin2	0.018
col15a1a	collagen, type XV, alpha 1a	0.017
rps3a	ribosomal protein S3A	0.017
zgc:92237	zgc:92237	0.017
vwa2	von Willebrand factor A domain containing 2	0.017
top2a	topoisomerase (DNA) II alpha	0.017
egfl6	EGF-like-domain, multiple 6	0.017
dct	dopachrome tautomerase	0.017
apoeb	apolipoprotein Eb	0.015
pes	pescadillo	0.015
disp1	dispatched homolog 1 (Drosophila)	0.015
plekhh1	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	0.015
gpm6aa	glycoprotein M6Aa	0.014
sb:cb62	sb:cb62	0.014
ddx21	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	0.014
gnl2	guanine nucleotide binding protein-like 2 (nucleolar)	0.014
lrrc17	leucine rich repeat containing 17	0.014
mib	mind bomb	0.014
itga7	integrin, alpha 7	0.014
mmp14a	matrix metalloproteinase 14a (membrane-inserted)	0.014
lrp2	low density lipoprotein-related protein 2	0.013
efemp2	EGF-containing fibulin-like extracellular matrix protein 2	0.013
ckmb	creatine kinase, muscle b	0.013
hspg2	heparan sulfate proteoglycan 2	0.013
ddx18	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.013
papss2b	3'-phosphoadenosine 5'-phosphosulfate synthase 2b	0.012
copb1	coatomer protein complex, subunit beta 1	0.012
emilin3a	elastin microfibril interfacer 3a	0.012
and3	actinodin3	0.011
pmelb	premelanosome protein b	0.011
stac3	SH3 and cysteine rich domain 3	0.011
im:6911434	im:6911434	0.011
fkbp10	FK506 binding protein 10	0.011
optc	opticin	0.011
p2rx5	purinergic receptor P2X, ligand-gated ion channel, 5	0.011
lamb2l	laminin, beta 2-like	0.011	Zebrafish
rbp1a	retinol binding protein 1a, cellular	0.011
myl1	myosin, light chain 1, alkali; skeletal, fast	0.010
rps2	ribosomal protein S2	0.010
ache	acetylcholinesterase	0.010
actn3b	actinin alpha 3b	0.010