IMP

Process View

Rattus norvegicus

29 genes annotated in rat

vesicle organization

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle.

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Known genes in the process in rat Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "vesicle organization"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "vesicle organization" (in gray)

Name	Description	Probability	Func Analog Organism
Arl1	ADP-ribosylation factor-like 1	0.412
Rap1b	RAP1B, member of RAS oncogene family	0.349
Hk1	hexokinase 1	0.270
Stxbp1	syntaxin binding protein 1	0.226	Yeast Mouse
Amph	amphiphysin	0.220
Gdi2	GDP dissociation inhibitor 2	0.164
Snap25	synaptosomal-associated protein 25	0.117
Syn1	synapsin I	0.111
Sh3gl2	SH3-domain GRB2-like 2	0.107
Serp1	stress-associated endoplasmic reticulum protein 1	0.099
Wdr7	WD repeat domain 7	0.094
Arf1	ADP-ribosylation factor 1	0.084
Rnf181	ring finger protein 181	0.083
Pip4k2b	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	0.079
Unc5a	unc-5 homolog A (C. elegans)	0.076
Nsf	N-ethylmaleimide-sensitive factor	0.075	Yeast Fly
Syt1	synaptotagmin I	0.074
Apba2	amyloid beta (A4) precursor protein-binding, family A, member 2	0.074
Vamp2	vesicle-associated membrane protein 2	0.072
Ap2a1	adaptor-related protein complex 2, alpha 1 subunit	0.072
Syt11	synaptotagmin XI	0.067	Rat
Dnajc5	DnaJ (Hsp40) homolog, subfamily C, member 5	0.067
B3gat1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	0.064
Rab1b	RAB1B, member RAS oncogene family	0.058
Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	0.056
Cacna1b	calcium channel, voltage-dependent, N type, alpha 1B subunit	0.054
Gnao1	guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O	0.051	Rat
Snx6	sorting nexin 6	0.051
Gnaq	guanine nucleotide binding protein (G protein), q polypeptide	0.050	Rat
Syt9	synaptotagmin IX	0.049	Rat
Nefl	neurofilament, light polypeptide	0.048
Prkacb	protein kinase, cAMP dependent, catalytic, beta	0.048
Tmco1	transmembrane and coiled-coil domains 1	0.046
Gabbr1	gamma-aminobutyric acid (GABA) B receptor 1	0.046
Syt7	synaptotagmin VII	0.046	Rat
Cnpy2	canopy 2 homolog (zebrafish)	0.045
Cyth1	cytohesin 1	0.044
Zfp238	zinc finger protein 238	0.044
Capn5	calpain 5	0.043
Atp2b2	ATPase, Ca++ transporting, plasma membrane 2	0.043
Dlgap3	discs, large (Drosophila) homolog-associated protein 3	0.043
Kdelr2	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	0.043
Ehf	ets homologous factor	0.042
Prdx1	peroxiredoxin 1	0.041
Unc13a	unc-13 homolog A (C. elegans)	0.040
Camk2n2	calcium/calmodulin-dependent protein kinase II inhibitor 2	0.038
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	0.038
Syt4	synaptotagmin IV	0.037
Exoc7	exocyst complex component 7	0.037
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	0.037
Freq	frequenin homolog (Drosophila)	0.036
Dlg4	discs, large homolog 4 (Drosophila)	0.036	Mouse
Arf4	ADP-ribosylation factor 4	0.036
Hpcal4	hippocalcin-like 4	0.036
Cntn1	contactin 1	0.034
Rab3a	RAB3A, member RAS oncogene family	0.034	Mouse
Mxd4	Max dimerization protein 4	0.033
Sec11a	SEC11 homolog A (S. cerevisiae)	0.033
Sdc3	syndecan 3	0.033
Synrg	synergin, gamma	0.033
Eef1a2	eukaryotic translation elongation factor 1 alpha 2	0.032
Adcyap1r1	adenylate cyclase activating polypeptide 1 receptor 1	0.032
Snap23	synaptosomal-associated protein 23	0.031
Dlg3	discs, large homolog 3 (Drosophila)	0.031
Gnaz	guanine nucleotide binding protein (G protein), alpha z polypeptide	0.031	Rat
Vsnl1	visinin-like 1	0.031
Rims1	regulating synaptic membrane exocytosis 1	0.031
Rab2a	RAB2A, member RAS oncogene family	0.030
Sptbn2	spectrin, beta, non-erythrocytic 2	0.030
Ap2a2	adaptor-related protein complex 2, alpha 2 subunit	0.029
RGD1306404	similar to mKIAA1402 protein	0.029
Mapk9	mitogen-activated protein kinase 9	0.029
Gad1	glutamate decarboxylase 1	0.029
Stx6	syntaxin 6	0.029	Human
Rhoa	ras homolog gene family, member A	0.028
Mmp14	matrix metallopeptidase 14 (membrane-inserted)	0.028
Clcn7	chloride channel 7	0.028
Kcnip3	Kv channel interacting protein 3, calsenilin	0.027
Gna12	guanine nucleotide binding protein (G protein) alpha 12	0.027	Rat
Chmp5	chromatin modifying protein 5	0.027
Mapk10	mitogen activated protein kinase 10	0.027
Gpam	glycerol-3-phosphate acyltransferase, mitochondrial	0.027
Clcn4-2	chloride channel 4-2	0.027
Eif1a	eukaryotic translation initiation factor 1A	0.027
Cx3cr1	chemokine (C-X3-C motif) receptor 1	0.026
Ube2d2	ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)	0.026
Dpp6	dipeptidylpeptidase 6	0.026
Arf3	ADP-ribosylation factor 3	0.026
Prph2	peripherin 2	0.026
Acox3	acyl-Coenzyme A oxidase 3, pristanoyl	0.026
Gja1	gap junction protein, alpha 1	0.026
Cplx1	complexin 1	0.025
Pik3r3	phosphoinositide-3-kinase, regulatory subunit 3 (gamma)	0.025
Ykt6	YKT6 v-SNARE homolog (S. cerevisiae)	0.025	Yeast
Faim2	Fas apoptotic inhibitory molecule 2	0.025
Scn2b	sodium channel, voltage-gated, type II, beta	0.025
Dag1	dystroglycan 1 (dystrophin-associated glycoprotein 1)	0.025
Omp	olfactory marker protein	0.025
Slc22a7	solute carrier family 22 (organic anion transporter), member 7	0.025
L1cam	L1 cell adhesion molecule	0.025
Mapre1	microtubule-associated protein, RP/EB family, member 1	0.025
Bin1	bridging integrator 1	0.025
Gak	cyclin G associated kinase	0.024
Kctd13	potassium channel tetramerisation domain containing 13	0.024
Snrk	SNF related kinase	0.024
Ndfip2	Nedd4 family interacting protein 2	0.024
Gabrg1	gamma-aminobutyric acid (GABA) A receptor, gamma 1	0.023
Gmppb	GDP-mannose pyrophosphorylase B	0.023
Bcl2l2	Bcl2-like 2	0.023
Sgta	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	0.023
Stxbp2	syntaxin binding protein 2	0.023
Accn1	amiloride-sensitive cation channel 1, neuronal	0.023
Atp1a3	ATPase, Na+/K+ transporting, alpha 3 polypeptide	0.022
Mapk8ip1	mitogen-activated protein kinase 8 interacting protein 1	0.022
Mgat3	mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase	0.022
Svop	SV2 related protein	0.022
RGD1562618	similar to RIKEN cDNA 6030419C18 gene	0.022
Cap1	CAP, adenylate cyclase-associated protein 1 (yeast)	0.021
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	0.021
Rph3a	rabphilin 3A	0.021
Mgat2	mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	0.021
Myo10	myosin X	0.021
Kcnc2	potassium voltage gated channel, Shaw-related subfamily, member 2	0.021
Sncb	synuclein, beta	0.021
Ak1	adenylate kinase 1	0.020
Tceal8	transcription elongation factor A (SII)-like 8	0.020
Cspg5	chondroitin sulfate proteoglycan 5	0.020
Clcn5	chloride channel 5	0.020
March2	membrane-associated ring finger (C3HC4) 2	0.020
LOC100364212	heterogeneous nuclear ribonucleoprotein K-like	0.020
Nr2f6	nuclear receptor subfamily 2, group F, member 6	0.019
Grin3b	glutamate receptor, ionotropic, N-methyl-D-aspartate 3B	0.019
Pde4d	phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila)	0.019
Ednrb	endothelin receptor type B	0.019
Kcnq3	potassium voltage-gated channel, KQT-like subfamily, member 3	0.019
Rap2ip	Rap2 interacting protein	0.019
Scamp2	secretory carrier membrane protein 2	0.018
Tbx3	T-box 3	0.018
Pcsk2	proprotein convertase subtilisin/kexin type 2	0.018
Vps52	vacuolar protein sorting 52 homolog (S. cerevisiae)	0.018
Rgs8	regulator of G-protein signaling 8	0.018
Capn2	calpain 2	0.017
Pls3	plastin 3 (T-isoform)	0.017
Itpr2	inositol 1,4,5-triphosphate receptor, type 2	0.017
Sstr3	somatostatin receptor 3	0.017
Ltb4r	leukotriene B4 receptor	0.017
Syn2	synapsin II	0.017
Cald1	caldesmon 1	0.016
Anxa7	annexin A7	0.016
Sv2c	synaptic vesicle glycoprotein 2c	0.016
Vps4b	vacuolar protein sorting 4 homolog B (S. cerevisiae)	0.016	Human
Wipf1	WAS/WASL interacting protein family, member 1	0.016
Kit	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	0.016
Doc2b	double C2-like domains, beta	0.016
Derl1	Der1-like domain family, member 1	0.016
Aes	amino-terminal enhancer of split	0.016
Sert1	Sertoli cell protein 1	0.016
Cltc	clathrin, heavy chain (Hc)	0.016
Paqr8	progestin and adipoQ receptor family member VIII	0.016
Cdk11b	cyclin-dependent kinase 11B	0.016
Gabrb3	gamma-aminobutyric acid (GABA) A receptor, beta 3	0.016
Cdc42bpb	CDC42 binding protein kinase beta (DMPK-like)	0.016
Arrb2	arrestin, beta 2	0.016
Adar	adenosine deaminase, RNA-specific	0.016
Slc25a24	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	0.016
Ifna1	interferon-alpha 1	0.016
Sct	secretin	0.015
Itgb1	integrin, beta 1	0.015
Apbb1	amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)	0.015
Htr1a	5-hydroxytryptamine (serotonin) receptor 1A	0.015
Crybb3	crystallin, beta B3	0.015
Grik1	glutamate receptor, ionotropic, kainate 1	0.015
Cplx2	complexin 2	0.015
Tmem30a	transmembrane protein 30A	0.015
Actr3	ARP3 actin-related protein 3 homolog (yeast)	0.015
Cmklr1	chemokine-like receptor 1	0.015
Slc9a1	solute carrier family 9 (sodium/hydrogen exchanger), member 1	0.015
Pacsin1	protein kinase C and casein kinase substrate in neurons 1	0.015
Ptpn9	protein tyrosine phosphatase, non-receptor type 9	0.015
Kpnb1	karyopherin (importin) beta 1	0.015
Grb7	growth factor receptor bound protein 7	0.015
Gabrd	gamma-aminobutyric acid (GABA) A receptor, delta	0.015
Smcr7l	Smith-Magenis syndrome chromosome region, candidate 7-like (human)	0.015
Tax1bp1	Tax1 (human T-cell leukemia virus type I) binding protein 1	0.014
Mlec	malectin	0.014
St18	suppression of tumorigenicity 18	0.014
Anxa4	annexin A4	0.014
Sec61a1	Sec61 alpha 1 subunit (S. cerevisiae)	0.014
Flt1	FMS-related tyrosine kinase 1	0.014
Cd36	CD36 molecule (thrombospondin receptor)	0.014
Kcnip4	Kv channel interacting protein 4	0.014
Thy1	Thy-1 cell surface antigen	0.014
Thrb	thyroid hormone receptor beta	0.014
Camkv	CaM kinase-like vesicle-associated	0.014
C3ar1	complement component 3a receptor 1	0.014
Igf2r	insulin-like growth factor 2 receptor	0.014
Myo1d	myosin ID	0.014
Atp1a1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	0.014
Tmod2	tropomodulin 2	0.014
Arpc1b	actin related protein 2/3 complex, subunit 1B	0.014
Stx5	syntaxin 5	0.014
Atp2c2	ATPase, Ca++ transporting, type 2C, member 2	0.014
Cdc26	cell division cycle 26	0.014
Ap3s1	adaptor-related protein complex 3, sigma 1 subunit	0.014
Cd5	Cd5 molecule	0.014
Pcp2	Purkinje cell protein 2	0.014
Mtpn	myotrophin	0.014
Ap2b1	adaptor-related protein complex 2, beta 1 subunit	0.014
Nap1l5	nucleosome assembly protein 1-like 5	0.013
Mef2d	myocyte enhancer factor 2D	0.013
Cdv3	carnitine deficiency-associated gene expressed in ventricle 3 homolog (mouse)	0.013
Uhmk1	U2AF homology motif (UHM) kinase 1	0.013
Fat2	FAT tumor suppressor homolog 2 (Drosophila)	0.013
Kcnq2	potassium voltage-gated channel, KQT-like subfamily, member 2	0.013
Gosr2	golgi SNAP receptor complex member 2	0.013
Fgfr2	fibroblast growth factor receptor 2	0.013
Slc39a7	solute carrier family 39 (zinc transporter), member 7	0.013
Dlgap1	discs, large (Drosophila) homolog-associated protein 1	0.013
Morf4l2	mortality factor 4 like 2	0.013
Fbxo23	F-box only protein 23	0.013
Chn2	chimerin (chimaerin) 2	0.013
Med25	mediator complex subunit 25	0.013
Cfd	complement factor D (adipsin)	0.013
Nxph1	neurexophilin 1	0.013
Krcc1	lysine-rich coiled-coil 1	0.013
Arpc1a	actin related protein 2/3 complex, subunit 1A	0.013
Jak1	Janus kinase 1	0.013
Tollip	toll interacting protein	0.013
Crk	v-crk sarcoma virus CT10 oncogene homolog (avian)	0.013
Gusb	glucuronidase, beta	0.013
Adap1	ArfGAP with dual PH domains 1	0.013
Cap2	CAP, adenylate cyclase-associated protein, 2 (yeast)	0.013
Txnrd1	thioredoxin reductase 1	0.013
Arrb1	arrestin, beta 1	0.013
Gp1bb	glycoprotein Ib (platelet), beta polypeptide	0.013
Ubc	ubiquitin C	0.013
Stx2	syntaxin 2	0.013	Yeast
RGD1307722	similar to hypothetical protein MGC20700	0.013
Vat1	vesicle amine transport protein 1 homolog (T californica)	0.012
Slc28a3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	0.012
Homer3	homer homolog 3 (Drosophila)	0.012
Crhr1	corticotropin releasing hormone receptor 1	0.012
Stx1a	syntaxin 1A (brain)	0.012	Yeast Fly
Gosr1	golgi SNAP receptor complex member 1	0.012
Yif1	Yip1 interacting factor homolog (S. cerevisiae)	0.012
Cugbp2	CUG triplet repeat, RNA binding protein 2	0.012
Lynx1	Ly6/neurotoxin 1	0.012
Rnf4	ring finger protein 4	0.012
LOC100360800	ring finger and WD repeat domain 2	0.012
Casp3	caspase 3	0.012
Pacs1	phosphofurin acidic cluster sorting protein 1	0.012
Bsn	bassoon	0.012
RGD1306750	LOC362451	0.012
Frk	fyn-related kinase	0.012
Nefm	neurofilament, medium polypeptide	0.012
Sec22a	SEC22 vesicle trafficking protein homolog A (S. cerevisiae)	0.012
Stat6	signal transducer and activator of transcription 6	0.012
Grid2	glutamate receptor, ionotropic, delta 2	0.012
Treh	trehalase (brush-border membrane glycoprotein)	0.012
Nnat	neuronatin	0.012
Ppp2r2a	protein phosphatase 2 (formerly 2A), regulatory subunit B, alpha isoform	0.012
Elk3	ELK3, ETS-domain protein	0.012
Sirpa	signal-regulatory protein alpha	0.012
Kcnk1	potassium channel, subfamily K, member 1	0.012
Tceal1	transcription elongation factor A (SII)-like 1	0.012
Dnajb9	DnaJ (Hsp40) homolog, subfamily B, member 9	0.012
Cyp2b21	cytochrome P450, family 2, subfamily b, polypeptide 21	0.012
Cyb5r1	cytochrome b5 reductase 1	0.012
Ift20	intraflagellar transport 20 homolog (Chlamydomonas)	0.012
Snrpn	small nuclear ribonucleoprotein polypeptide N	0.012
Tm2d1	TM2 domain containing 1	0.012
Ostc	oligosaccharyltransferase complex subunit	0.012
Ezr	ezrin	0.011
Usf1	upstream transcription factor 1	0.011
Calu	calumenin	0.011
Ptger1	prostaglandin E receptor 1 (subtype EP1)	0.011
RGD1311122	similar to RIKEN cDNA 1110003E01	0.011
Fcgr2a	Fc fragment of IgG, low affinity IIa, receptor (CD32)	0.011
Pld2	phospholipase D2	0.011	Fly
Bet1	blocked early in transport 1 homolog (S. cerevisiae)	0.011
Arfrp1	ADP-ribosylation factor related protein 1	0.011
Clic4	chloride intracellular channel 4	0.011
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	0.011
Ralb	v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein)	0.011
Pou6f1	POU class 6 homeobox 1	0.011
Akt1s1	AKT1 substrate 1 (proline-rich)	0.011
Lmbrd1	LMBR1 domain containing 1	0.011
Vamp1	vesicle-associated membrane protein 1	0.011	Mouse
Syt13	synaptotagmin XIII	0.011	Rat
Pfkm	phosphofructokinase, muscle	0.011
Slco1a5	solute carrier organic anion transporter family, member 1a5	0.011
Slc30a5	solute carrier family 30 (zinc transporter), member 5	0.011
Rab21	RAB21, member RAS oncogene family	0.011
Pde1b	phosphodiesterase 1B, calmodulin-dependent	0.011
Gmfg	glia maturation factor, gamma	0.011
Nsg1	neuron specific gene family member 1	0.011
Cdon	Cdon homolog (mouse)	0.011
Miox	myo-inositol oxygenase	0.011
Sst	somatostatin	0.011
Ifitm1	interferon induced transmembrane protein 1	0.011
Rhoc	ras homolog gene family, member C	0.011
Gtf2f2	general transcription factor IIF, polypeptide 2	0.011
RGD1309104	similar to RIKEN cDNA 1700025G04 gene	0.011
Calm3	calmodulin 3	0.011
Pik3r2	phosphoinositide-3-kinase, regulatory subunit 2 (beta)	0.011
Rab8a	RAB8A, member RAS oncogene family	0.011	Human Yeast
Uso1	USO1 homolog, vesicle docking protein (yeast)	0.011
Atxn3	ataxin 3	0.011
Kcnf1	potassium voltage-gated channel, subfamily F, member 1	0.011
Bcl2l11	BCL2-like 11 (apoptosis facilitator)	0.011
Extl3	exostoses (multiple)-like 3	0.011
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	0.011
Cyp19a1	cytochrome P450, family 19, subfamily a, polypeptide 1	0.011
Prkcg	protein kinase C, gamma	0.010
Lman1	lectin, mannose-binding, 1	0.010
Pggt1b	protein geranylgeranyltransferase type I, beta subunit	0.010
Ypel5	yippee-like 5 (Drosophila)	0.010
Cebpa	CCAAT/enhancer binding protein (C/EBP), alpha	0.010
Cadps	Ca++-dependent secretion activator	0.010	Mouse
Rfc1	replication factor C (activator 1) 1	0.010
Gng11	guanine nucleotide binding protein (G protein), gamma 11	0.010
Mpp3	membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)	0.010
Lgals8	lectin, galactoside-binding, soluble, 8	0.010
Pmm2	phosphomannomutase 2	0.010
Pfkl	phosphofructokinase, liver	0.010
Scn8a	sodium channel, voltage gated, type VIII, alpha subunit	0.010
Lrrc28	leucine rich repeat containing 28	0.010
Crmp1	collapsin response mediator protein 1	0.010
Rhbdl1	rhomboid, veinlet-like 1 (Drosophila)	0.010
Pak1	p21 protein (Cdc42/Rac)-activated kinase 1	0.010
Spire1	spire homolog 1 (Drosophila)	0.010
Rasgrp1	RAS guanyl releasing protein 1 (calcium and DAG-regulated)	0.010
LOC686590	similar to IQ motif and Sec7 domain 1	0.010
Sra1	steroid receptor RNA activator 1	0.010
Sec22b	SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	0.010	Yeast
Rpe65	retinal pigment epithelium 65	0.010
Akap1	A kinase (PRKA) anchor protein 1	0.010
Unc13b	unc-13 homolog B (C. elegans)	0.010