IMP

Process View

Danio rerio

8 genes annotated in zebrafish

retinal cone cell development

Development of a cone cell, one of the sensory cells in the eye that reacts to the presence of light. Cone cells contain the photopigment iodopsin or cyanopsin and are responsible for photopic (daylight) vision.

Loading network...

In addition to gene-name show these genes:

Known genes in the process in zebrafish Include functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "retinal cone cell development"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "retinal cone cell development" (in gray)

Name	Description	Probability	Func Analog Organism
tbx16	T-box gene 16	0.738	Zebrafish
ntla	no tail a	0.473	Zebrafish
bmp4	bone morphogenetic protein 4	0.416
flh	floating head	0.393
rxraa	retinoid X receptor, alpha a	0.362
tbx2a	T-box gene 2a	0.267	Zebrafish
her1	hairy-related 1	0.239
otx2	orthodenticle homolog 2	0.207
tbx2b	T-box 2b	0.186
ift88	intraflagellar transport 88 homolog	0.185
otx5	orthodenticle homolog 5	0.172
cdh2	cadherin 2, neuronal	0.149
rarab	retinoic acid receptor, alpha b	0.146	Zebrafish
dact1	dapper homolog 1, antagonist of beta-catenin (xenopus)	0.138
crx	cone-rod homeobox	0.136
has2	hyaluronan synthase 2	0.120
pde6c	phosphodiesterase 6C, cGMP-specific, cone, alpha prime	0.117
cry3	cryptochrome 3	0.114
wnt11	wingless-type MMTV integration site family, member 11	0.108
tbx1	T-box 1	0.105	Zebrafish
tfap2a	transcription factor AP-2 alpha	0.098
raraa	retinoic acid receptor, alpha a	0.088	Zebrafish
nr2e3	nuclear receptor subfamily 2, group E, member 3	0.086
per3	period homolog 3 (Drosophila)	0.079
msxc	muscle segment homeobox C	0.075
wnt5b	wingless-type MMTV integration site family, member 5b	0.075
bmp2b	bone morphogenetic protein 2b	0.070
rxrga	retinoid x receptor, gamma a	0.069
six3b	sine oculis homeobox homolog 3b	0.066
pax2a	paired box gene 2a	0.060
kif17	kinesin family member 17	0.060
arr3a	arrestin 3a, retinal (X-arrestin)	0.060
pcdh8	protocadherin 8	0.056
rxrba	retinoid x receptor, beta a	0.054
tbx5a	T-box 5a	0.054	Zebrafish
pkd2	polycystic kidney disease 2	0.050
vcanb	versican b	0.049
chd	chordin	0.047
loxl3b	lysyl oxidase-like 3b	0.045
fgf10a	fibroblast growth factor 10a	0.044
rx3	retinal homeobox gene 3	0.044
hapln1a	hyaluronan and proteoglycan link protein 1a	0.044
rargb	retinoic acid receptor, gamma b	0.042	Zebrafish
gngt2a	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2a	0.040
cyp26a1	cytochrome P450, subfamily XXVIA, polypeptide 1	0.040
shha	sonic hedgehog a	0.039
dlg1	discs, large (Drosophila) homolog 1	0.037
aanat2	arylalkylamine N-acetyltransferase	0.036
fgf8a	fibroblast growth factor 8 a	0.033
atoh7	atonal homolog 7	0.033
mib	mind bomb	0.033
crb2a	crumbs homolog 2a	0.032
brd2b	bromodomain containing 2b	0.031
vcana	versican a	0.030
eomesa	eomesodermin homolog a	0.030	Zebrafish
nkx2.5	NK2 transcription factor related 5	0.029
dlx6a	distal-less homeobox gene 6a	0.029
lft1	lefty1	0.029
myod1	myogenic differentiation 1	0.026
rorcb	RAR-related orphan receptor C b	0.026
mib2	mind bomb 2	0.026
prrx1b	paired related homeobox 1b	0.026
smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.025
fezf2	FEZ family zinc finger 2	0.024
slc25a37	solute carrier family 25, member 37	0.024
hoxd11a	homeo box D11a	0.024
cacnb2b	calcium channel, voltage-dependent, beta 2b	0.024
pvrl1a	poliovirus receptor-related 1a	0.023
her7	hairy and enhancer of split related-7	0.023
slc12a2	solute carrier family 12 (potassium/chloride transporters), member 2	0.022
nr1d2a	nuclear receptor subfamily 1, group D, member 2a	0.022	Zebrafish
lratb	lecithin retinol acyltransferase b (phosphatidylcholine--retinol O-acyltransferase b)	0.022
eya1	eyes absent homolog 1	0.021
tcf7	transcription factor 7 (T-cell specific, HMG-box)	0.021
cdx4	caudal type homeo box transcription factor 4	0.021
clrn1	clarin 1	0.020
guk1	guanylate kinase 1	0.020
hoxa13a	homeo box A13a	0.020
tbx24	T-box 24	0.019	Zebrafish
tgfbi	transforming growth factor, beta-induced	0.019
twist1a	twist1a	0.019
zgc:77060	zgc:77060	0.019
aldh1a2	aldehyde dehydrogenase 1 family, member A2	0.019
fgf3	fibroblast growth factor 3	0.018
tcf21	transcription factor 21	0.018
cart1	cartilage paired-class homeoprotein 1	0.018
otof	otoferlin	0.018
jhdm1da	jumonji C domain containing histone demethylase 1 homolog Da (S. cerevisiae)	0.017
scn12ab	sodium channel, voltage gated, type XII, alpha b	0.017
foxg1a	forkhead box G1a	0.017
gngt1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	0.017
irx7	iroquois homeobox protein 7	0.016
six3a	sine oculis homeobox homolog 3a	0.016
crabp2a	cellular retinoic acid binding protein 2, a	0.016
vsx1	visual system homeobox 1 homolog, chx10-like	0.016
sema3h	semaphorin 3h	0.016
myf5	myogenic factor 5	0.015
hoxc8a	homeo box C8a	0.015
wu:fb01h12	wu:fb01h12	0.015
dlx2a	distal-less homeobox gene 2a	0.015
rxrab	retinoid x receptor, alpha b	0.015
nr1d1	nuclear receptor subfamily 1, group d, member 1	0.015	Zebrafish
gnat1	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1	0.014
rab11fip4a	RAB11 family interacting protein 4 (class II) a	0.014
aldh1a3	aldehyde dehydrogenase 1 family, member A3	0.014
rlbp1a	retinaldehyde binding protein 1a	0.014
and1	actinodin1	0.014
rx2	retinal homeobox gene 2	0.013
eve1	even-skipped-like1	0.013
gsc	goosecoid	0.013
prdm9	PR domain containing 9	0.013
barx1	BarH-like homeobox 1	0.013
vsx2	visual system homeobox 2	0.013
notch1a	notch homolog 1a	0.013
rcv1	recoverin	0.013
gc3	guanylyl cyclase 3	0.013
myo7aa	myosin VIIAa	0.013
mkxa	mohawk homeobox a	0.013
per2	period homolog 2 (Drosophila)	0.012
epha4b	eph receptor A4b	0.012
foxd5	forkhead box D5	0.012
slc6a8	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	0.012
myl7	myosin, light polypeptide 7, regulatory	0.012
dctn1a	dynactin 1a	0.012
stat3	signal transduction and activation of transcription 3	0.011
LOC556647	GDNF family receptor alpha-4-like	0.011
barhl2	BarH-like 2	0.011
zgc:162939	zgc:162939	0.011
diras1a	DIRAS family, GTP-binding RAS-like 1a	0.011
chtf18	CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)	0.011
rcor2	REST corepressor 2	0.011
vdra	vitamin D receptor a	0.011
pax9	paired box gene 9	0.011
hoxa13b	homeo box A13b	0.011
rxrbb	retinoid x receptor, beta b	0.011
rbp4l	retinol binding protein 4, like	0.011
rxrgb	retinoid X receptor, gamma b	0.010
guca1c	guanylate cyclase activator 1C	0.010
mmp14a	matrix metalloproteinase 14a (membrane-inserted)	0.010
dnmt8	DNA (cytosine-5-)-methyltransferase 8	0.010
wu:fv91b12	wu:fv91b12	0.010