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Process View

Danio rerio

8 genes annotated in zebrafish

regulation of rna splicing

Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "regulation of rna splicing"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "regulation of rna splicing" (in gray)

Name	Description	Probability	Func Analog Organism
safb	scaffold attachment factor B	0.549	Fly
snrnp70	small nuclear ribonucleoprotein 70 (U1)	0.369
setb	SET translocation (myeloid leukemia-associated) B	0.342
khdrbs1a	KH domain containing, RNA binding, signal transduction associated 1a	0.258	Fly
rbmx	RNA binding motif protein, X-linked	0.238	Human Rat
hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.191	Fly
srsf2	serine/arginine-rich splicing factor 2	0.173	Mouse Fly
zgc:77052	zgc:77052	0.172	Fly
snrpc	small nuclear ribonucleoprotein polypeptide C	0.126
srsf6b	serine/arginine-rich splicing factor 6b	0.124	Human Fly
snrpd3l	small nuclear ribonucleoprotein D3 polypeptide, like	0.119
hnrnpa1	heterogeneous nuclear ribonucleoprotein A1	0.114	Fly
srsf6a	serine/arginine-rich splicing factor 6a	0.113	Human Fly
hnrpl	heterogeneous nuclear ribonucleoprotein L	0.102
tra2a	transformer-2 alpha	0.085	Fly
sart1	squamous cell carcinoma antigen recognised by T cells	0.084
api5	apoptosis inhibitor 5	0.078
cpsf6	cleavage and polyadenylation specific factor 6	0.076	Fly
ck2b	casein kinase 2 beta	0.074
rbm39b	RNA binding motif protein 39b	0.062
hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.059
sf1	splicing factor 1	0.054
trnau1apl	tRNA selenocysteine 1 associated protein 1, like	0.052
snrnp40	small nuclear ribonucleoprotein 40 (U5)	0.047
smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	0.046
ddx39aa	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa	0.045	Fly
luc7l	LUC7-like (S. cerevisiae)	0.044
sfrs3b	splicing factor, arginine/serine-rich 3b	0.042
hnrnpa0	heterogeneous nuclear ribonucleoprotein A0	0.042	Fly
ranbp1	RAN binding protein 1	0.042
ilf2	interleukin enhancer binding factor 2	0.041
pnn	pinin, desmosome associated protein	0.039
hnrnpa0l	heterogeneous nuclear ribonucleoprotein A0, like	0.038
wu:fb58e05	wu:fb58e05	0.038
matr3l	matrin 3-like	0.038
nr2f2	nuclear receptor subfamily 2, group F, member 2	0.037
hnrnph1l	heterogeneous nuclear ribonucleoprotein H1, like	0.037	Human
ddx39b	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b	0.036	Fly
eftud2	elongation factor Tu GTP binding domain containing 2	0.036
h3f3b.1	H3 histone, family 3B.1	0.036
srsf4	serine/arginine-rich splicing factor 4	0.036
rbm8a	RNA binding motif protein 8A	0.035	Human
anp32e	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.034
zgc:112425	zgc:112425	0.032
sf3a2	splicing factor 3a, subunit 2	0.031
prp19	PRP19/PSO4 homolog (S. cerevisiae)	0.031	Mouse
ewsr1b	Ewing sarcoma breakpoint region 1b	0.031
sf3b4	splicing factor 3b, subunit 4	0.030	Mouse
puf60a	poly-U binding splicing factor a	0.030	Fly
xrn2	5'-3' exoribonuclease 2	0.029
ilf3b	interleukin enhancer binding factor 3b	0.028
tia1l	cytotoxic granule-associated RNA binding protein 1, like	0.028	Human Fly
smu1	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	0.028	Worm
eif1b	eukaryotic translation initiation factor 1B	0.028
khdrbs1b	KH domain containing, RNA binding, signal transduction associated 1b	0.027	Fly
ncl	nucleolin	0.027
h2afv	H2A histone family, member V	0.026
zgc:136380	zgc:136380	0.026
zgc:56409	zgc:56409	0.025
acin1a	apoptotic chromatin condensation inducer 1a	0.025	Human
hnrpdl	heterogeneous nuclear ribonucleoprotein D-like	0.025	Fly
eif4a1a	eukaryotic translation initiation factor 4A, isoform 1A	0.024
ddx19	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast)	0.024
si:dkey-181m9.9	si:dkey-181m9.9	0.023
zgc:77155	zgc:77155	0.022
nova2	neuro-oncological ventral antigen 2	0.022
zfyve26	zinc finger, FYVE domain containing 26	0.022
u2af2b	U2 small nuclear RNA auxiliary factor 2b	0.021	Human Fly
ppp2cb	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	0.021
rbfox1	RNA binding protein, fox-1 homolog (C. elegans) 1	0.021	Zebrafish
ddx5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.021	Human Fly
dag1	dystroglycan 1	0.020
calm3b	calmodulin 3b (phosphorylase kinase, delta)	0.019
g3bp1	GTPase activating protein (SH3 domain) binding protein 1	0.019
zgc:56148	zgc:56148	0.018
hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.018	Mouse
si:ch211-51e12.7	si:ch211-51e12.7	0.018
pqbp1l	polyglutamine binding protein 1-like	0.018	Human
yy1a	YY1 transcription factor a	0.018
ubtf	upstream binding transcription factor, RNA polymerase I	0.018
im:7163548	im:7163548	0.018
snrpd1	small nuclear ribonucleoprotein D1 polypeptide	0.018
eif4a3	eukaryotic translation initiation factor 4A, isoform 3	0.017	Mouse
wtap	Wilms tumor 1 associated protein	0.017	Human
tcf12	transcription factor 12	0.017
thoc1	THO complex 1	0.017
phf5a	PHD finger protein 5A	0.017
pcf11	cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)	0.017
zgc:103692	zgc:103692	0.017
prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast)	0.017
wdr82	WD repeat domain containing 82	0.016
nola1	nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)	0.016
u2af1	U2(RNU2) small nuclear RNA auxiliary factor 1	0.016	Fly
eif4e	eukaryotic translation initiation factor 4e	0.016
hug	HuG	0.016	Worm
hmga1a	high mobility group AT-hook 1a	0.016
ube2nb	ubiquitin-conjugating enzyme E2Nb	0.016
rtcd1	RNA terminal phosphate cyclase domain 1	0.016
ctbp1	C-terminal binding protein 1	0.016
htatsf1	HIV TAT specific factor 1	0.016
znf207b	zinc finger protein 207, b	0.015
tial1	TIA1 cytotoxic granule-associated RNA binding protein-like 1	0.015	Fly
tcea1	transcription elongation factor A (SII), 1	0.015
zgc:66385	zgc:66385	0.015
marcksa	myristoylated alanine rich protein kinase C substrate a	0.015
kdm1a	lysine (K)-specific demethylase 1a	0.015
dsg2	desmoglein 2	0.015
h3f3c	H3 histone, family 3C	0.015
wnt3a	wingless-type MMTV integration site family, member 3A	0.015
ppp2r1a	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.014
zgc:110682	zgc:110682	0.014	Mouse
h2afvl	H2A histone family, member V, like	0.014
srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.014
hmgb1b	high-mobility group box 1b	0.014
ogt.2	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 2	0.014
glud1b	glutamate dehydrogenase 1b	0.014
nr2f6a	nuclear receptor subfamily 2, group F, member 6a	0.014
zgc:73265	zgc:73265	0.013
srsf1b	serine/arginine-rich splicing factor 1b	0.013
eif4a2	eukaryotic translation initiation factor 4A, isoform 2	0.013	Fly
elavl1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	0.013	Worm
wu:fd10h03	wu:fd10h03	0.013
cd99l2	CD99 antigen-like 2	0.013
gabpa	GA-binding protein transcription factor, alpha subunit	0.013
znf207a	zinc finger protein 207, a	0.013
snrpb2	small nuclear ribonucleoprotein polypeptide B2	0.013
leo1	Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.013
dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16	0.012
sumo3a	SMT3 suppressor of mif two 3 homolog 3a	0.012
etf1	eukaryotic translation termination factor 1	0.012
wu:fb63c04	wu:fb63c04	0.012
sf3b5	splicing factor 3b, subunit 5	0.012
cpsf2	cleavage and polyadenylation specific factor 2	0.012
boc	brother of CDO	0.012
zgc:55741	zgc:55741	0.012
nup50	nucleoporin 50	0.012
prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast)	0.012
dazl	daz-like gene	0.011
sap18	sin3-associated polypeptide	0.011	Human
utp11l	UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)	0.011
wu:fb17g07	wu:fb17g07	0.011
wu:fc24e06	wu:fc24e06	0.011
pcdh2ac	protocadherin 2 alpha c	0.011
mre11a	meiotic recombination 11 homolog A (S. cerevisiae)	0.011
zgc:112982	zgc:112982	0.011
tardbp	TAR DNA binding protein	0.011
anp32a	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	0.011
rsrc2	arginine/serine-rich coiled-coil 2	0.011
ssb	Sjogren syndrome antigen B (autoantigen La)	0.011
srsf11	serine/arginine-rich splicing factor 11	0.010	Fly
rbm4.3	RNA binding motif protein 4.3	0.010
ccnl1	cyclin L1	0.010
rbm4.2	RNA binding motif protein 4.2	0.010	Human
caprin1a	cell cycle associated protein 1a	0.010
atf4b2	activating transcription factor 4b2	0.010
smek2	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	0.010
optc	opticin	0.010