IMP

Process View

Danio rerio

10 genes annotated in zebrafish

Multi-species View

rna splicing via transesterification reactions

GO:0000375

Splicing of RNA via a series of two transesterification reactions.

Loading network...

In addition to gene-name show these genes:

Known genes in the process in zebrafish Include functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "rna splicing via transesterification reactions"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "rna splicing via transesterification reactions" (in gray)

Name	Description	Probability	Func Analog Organism
snrnp70	small nuclear ribonucleoprotein 70 (U1)	0.717
hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.527	Fly
snrpd3l	small nuclear ribonucleoprotein D3 polypeptide, like	0.508
khdrbs1a	KH domain containing, RNA binding, signal transduction associated 1a	0.474	Fly
api5	apoptosis inhibitor 5	0.430
srsf2	serine/arginine-rich splicing factor 2	0.386	Mouse Fly
srsf6b	serine/arginine-rich splicing factor 6b	0.255	Human Fly
snrpb2	small nuclear ribonucleoprotein polypeptide B2	0.199
puf60b	poly-U binding splicing factor b	0.183	Fly
sap18	sin3-associated polypeptide	0.160	Human
ilf2	interleukin enhancer binding factor 2	0.156
setb	SET translocation (myeloid leukemia-associated) B	0.132
smu1	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	0.129	Worm
sf3b1	splicing factor 3b, subunit 1	0.114
magoh	mago-nashi homolog, proliferation-associated (Drosophila)	0.109	Human
khdrbs1b	KH domain containing, RNA binding, signal transduction associated 1b	0.097	Fly
atf4b2	activating transcription factor 4b2	0.094
safb	scaffold attachment factor B	0.092	Fly
snrpc	small nuclear ribonucleoprotein polypeptide C	0.091
u2af1	U2(RNU2) small nuclear RNA auxiliary factor 1	0.089	Fly
rbmx	RNA binding motif protein, X-linked	0.082	Human Rat
tra2a	transformer-2 alpha	0.082	Human Fly
zgc:112425	zgc:112425	0.079
ilf3b	interleukin enhancer binding factor 3b	0.077
phf5a	PHD finger protein 5A	0.073	Human
elavl1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	0.072	Worm
ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.067
rbm8a	RNA binding motif protein 8A	0.067	Human
srsf4	serine/arginine-rich splicing factor 4	0.066
anp32e	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.063
srsf6a	serine/arginine-rich splicing factor 6a	0.063	Human Fly
snrpb	small nuclear ribonucleoprotein polypeptides B and B1	0.062
ewsr1b	Ewing sarcoma breakpoint region 1b	0.060
smarce1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	0.060
hnrnph1l	heterogeneous nuclear ribonucleoprotein H1, like	0.056
sf1	splicing factor 1	0.056
sart1	squamous cell carcinoma antigen recognised by T cells	0.053
sf3a2	splicing factor 3a, subunit 2	0.050
znf207a	zinc finger protein 207, a	0.049
hnrpl	heterogeneous nuclear ribonucleoprotein L	0.049
ppp2r1a	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.048
rbm4.3	RNA binding motif protein 4.3	0.048
ddx5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.046	Human Fly
eif4a3	eukaryotic translation initiation factor 4A, isoform 3	0.045	Mouse
prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast)	0.041
rbm39b	RNA binding motif protein 39b	0.041
sfrs3b	splicing factor, arginine/serine-rich 3b	0.041
zgc:77155	zgc:77155	0.041
wu:fb58e05	wu:fb58e05	0.040
hnrnpl2	heterogeneous nuclear ribonucleoprotein L2	0.039
caprin1a	cell cycle associated protein 1a	0.039
ddx39b	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b	0.036	Human Yeast Fly
hnrnpa0	heterogeneous nuclear ribonucleoprotein A0	0.036	Fly
rbm39a	RNA binding motif protein 39a	0.036	Fly
sumo3a	SMT3 suppressor of mif two 3 homolog 3a	0.036
ran	ras-related nuclear protein	0.034
sf3b4	splicing factor 3b, subunit 4	0.034	Mouse
ranbp1	RAN binding protein 1	0.033
zgc:55695	zgc:55695	0.032
hnrnpa1	heterogeneous nuclear ribonucleoprotein A1	0.032	Mouse Fly
luc7l	LUC7-like (S. cerevisiae)	0.031	Yeast
eif4a1a	eukaryotic translation initiation factor 4A, isoform 1A	0.031
rbm4.2	RNA binding motif protein 4.2	0.031	Human
pnn	pinin, desmosome associated protein	0.030
eif1b	eukaryotic translation initiation factor 1B	0.029
bms1l	BMS1-like, ribosome assembly protein (yeast)	0.029
zfr	zinc finger RNA binding protein	0.028
hnrnpa0l	heterogeneous nuclear ribonucleoprotein A0, like	0.028
snrpd1	small nuclear ribonucleoprotein D1 polypeptide	0.028	Human
cpsf6	cleavage and polyadenylation specific factor 6	0.028	Fly
snrpa	small nuclear ribonucleoprotein polypeptide A	0.027
thoc1	THO complex 1	0.027
pwp2h	PWP2 periodic tryptophan protein homolog (yeast)	0.027
mbnl2	muscleblind-like 2 (Drosophila)	0.026	Mouse
xrn2	5'-3' exoribonuclease 2	0.026
zgc:158363	zgc:158363	0.026
ddx42	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	0.026
tcea1	transcription elongation factor A (SII), 1	0.026
ubtf	upstream binding transcription factor, RNA polymerase I	0.025
h3f3b.1	H3 histone, family 3B.1	0.025
si:ch211-59d15.5	si:ch211-59d15.5	0.025
zgc:86598	zgc:86598	0.025
wu:fi04f09	wu:fi04f09	0.024
stac3	SH3 and cysteine rich domain 3	0.024
zgc:77052	zgc:77052	0.024	Fly
srsf11	serine/arginine-rich splicing factor 11	0.024	Fly
ck2b	casein kinase 2 beta	0.024
rcc2	regulator of chromosome condensation 2	0.023
h2afvl	H2A histone family, member V, like	0.023
znf207b	zinc finger protein 207, b	0.022
ef1a	elongation factor 1-alpha	0.022
nr2f6a	nuclear receptor subfamily 2, group F, member 6a	0.022
dmap1	DNA methyltransferase 1 associated protein 1	0.022
smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	0.021
u2af2b	U2 small nuclear RNA auxiliary factor 2b	0.021	Human Fly
nup50	nucleoporin 50	0.021
snrnp40	small nuclear ribonucleoprotein 40 (U5)	0.021
mbd3a	methyl-CpG binding domain protein 3a	0.021
axin1	axin 1	0.021
g3bp1	GTPase activating protein (SH3 domain) binding protein 1	0.021
calm3b	calmodulin 3b (phosphorylase kinase, delta)	0.020
sf3b5	splicing factor 3b, subunit 5	0.019
seta	SET translocation (myeloid leukemia-associated) A	0.019
rtcd1	RNA terminal phosphate cyclase domain 1	0.019
im:7153552	im:7153552	0.019
lsm8	LSM8 homolog, U6 small nuclear RNA associated	0.019
taf7	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	0.019
h3f3c	H3 histone, family 3C	0.019
ube2v2	ubiquitin-conjugating enzyme E2 variant 2	0.018
trnau1apl	tRNA selenocysteine 1 associated protein 1, like	0.018
snrpe	small nuclear ribonucleoprotein polypeptide E	0.018	Human
exosc6	exosome component 6	0.017
zgc:73265	zgc:73265	0.017
dag1	dystroglycan 1	0.017
xab2	XPA binding protein 2	0.017
ccnl1	cyclin L1	0.017
eftud2	elongation factor Tu GTP binding domain containing 2	0.017	Yeast
tardbp	TAR DNA binding protein	0.017
rnps1	RNA binding protein S1, serine-rich domain	0.016	Human
smx5	smx5	0.016
eed	embryonic ectoderm development	0.016
im:7163548	im:7163548	0.016
zgc:55870	zgc:55870	0.016
c1d	C1D nuclear receptor co-repressor	0.016
eng1b	engrailed 1b	0.016
med18	mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	0.016
ddx39aa	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa	0.016	Human Yeast Fly
htatsf1	HIV TAT specific factor 1	0.015
cpsf2	cleavage and polyadenylation specific factor 2	0.015
matr3l	matrin 3-like	0.015
zgc:110682	zgc:110682	0.015	Mouse
ctbp1	C-terminal binding protein 1	0.015
zgc:110801	zgc:110801	0.015
srsf5b	serine/arginine-rich splicing factor 5b	0.015	Fly
diexf	digestive organ expansion factor homolog	0.014
srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.014
myf5	myogenic factor 5	0.014
mphosph8	M-phase phosphoprotein 8	0.014
wu:fb80a07	wu:fb80a07	0.014
gro1	groucho 1	0.014
bub3	BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)	0.014
ilf3a	interleukin enhancer binding factor 3a	0.014
sf3a1	splicing factor 3a, subunit 1	0.014	Human Fly
prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast)	0.014
upf1	upf1 regulator of nonsense transcripts homolog (yeast)	0.014
ubin	ataxin-1 ubiquitin-like interacting protein	0.013
cwf19l1	CWF19-like 1, cell cycle control	0.013
h2afv	H2A histone family, member V	0.013
npm1	nucleophosmin 1	0.013	Mouse
tada3l	transcriptional adaptor 3 (NGG1 homolog, yeast)-like	0.013
elf2b	E74-like factor 2b (ets domain transcription factor)	0.013
snrpd3	small nuclear ribonucleoprotein D3 polypeptide	0.013	Human
psen1	presenilin 1	0.013
zgc:112982	zgc:112982	0.013
yy1a	YY1 transcription factor a	0.013
pes	pescadillo	0.013
puf60a	poly-U binding splicing factor a	0.012	Fly
cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	0.012
gemin5	gem (nuclear organelle) associated protein 5	0.012
zgc:112254	zgc:112254	0.012
smndc1	survival motor neuron domain containing 1	0.012
kdm1a	lysine (K)-specific demethylase 1a	0.012
zgc:110325	zgc:110325	0.012
tial1	TIA1 cytotoxic granule-associated RNA binding protein-like 1	0.012	Fly
rbl1	retinoblastoma-like 1 (p107)	0.012
zgc:77262	zgc:77262	0.011
erh	enhancer of rudimentary homolog (Drosophila)	0.011
hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.011	Human
ctnna	catenin (cadherin-associated protein), alpha	0.011
nhp2	NHP2 ribonucleoprotein homolog (yeast)	0.011
pqbp1l	polyglutamine binding protein 1-like	0.011	Human
snx12	sorting nexin 12	0.011
zgc:55741	zgc:55741	0.011
mef2d	myocyte enhancer factor 2d	0.011
lancl1	LanC antibiotic synthetase component C-like 1 (bacterial)	0.011
ppp1r10	protein phosphatase 1, regulatory subunit 10	0.011
anapc5	anaphase promoting complex subunit 5	0.011
ube2l3a	ubiquitin-conjugating enzyme E2L 3a	0.011
psmd11b	proteasome (prosome, macropain) 216S subunit, non-ATPase, 11b	0.011
srsf5a	serine/arginine-rich splicing factor 5a	0.011	Fly
hug	HuG	0.011	Worm
ywhae1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1	0.011
cirbp	cold inducible RNA binding protein	0.011
pcf11	cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)	0.011
si:ch211-51e12.7	si:ch211-51e12.7	0.011
exosc9	exosome component 9	0.011
nudc	nuclear distribution gene C homolog	0.010
nola1	nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)	0.010
syf2	SYF2 homolog, RNA splicing factor (S. cerevisiae)	0.010
ptbp2	polypyrimidine tract binding protein 2	0.010	Mouse
ddx19	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast)	0.010
tardbpl	TAR DNA binding protein, like	0.010