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Process View

Danio rerio

3 genes annotated in zebrafish

retinal metabolic process

The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "retinal metabolic process"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "retinal metabolic process" (in gray)

Name	Description	Probability	Func Analog Organism
aldh1a2	aldehyde dehydrogenase 1 family, member A2	0.922	Mouse
dlc	deltaC	0.382
tbx1	T-box 1	0.275
dct	dopachrome tautomerase	0.169
gata5	GATA-binding protein 5	0.119
foxa3	forkhead box A3	0.096
hnf1ba	HNF1 homeobox Ba	0.087
cxcl12a	chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1)	0.087
ntla	no tail a	0.080
gsc	goosecoid	0.078
dld	deltaD	0.069
hand2	heart and neural crest derivatives expressed transcript 2	0.069
wnt3a	wingless-type MMTV integration site family, member 3A	0.063
cyp26a1	cytochrome P450, subfamily XXVIA, polypeptide 1	0.063
dhrs3a	dehydrogenase/reductase (SDR family) member 3a	0.063
nr5a5	nuclear receptor subfamily 5, group A, member 5	0.061
rgrb	retinal G protein coupled receptor b	0.060
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.059
pax3a	paired box gene 3a	0.058
cxcl12b	chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1)	0.056
rest	RE1-silencing transcription factor	0.051
zgc:73359	zgc:73359	0.049
rasl11b	RAS-like, family 11, member B	0.048
cdx4	caudal type homeo box transcription factor 4	0.046
edn1	endothelin 1	0.043
crabp2a	cellular retinoic acid binding protein 2, a	0.042
itga5	integrin, alpha 5 (fibronectin receptor, alpha polypeptide)	0.042
nkx2.5	NK2 transcription factor related 5	0.040
srd5a2a	steroid-5-alpha-reductase, alpha polypeptide 2a	0.040
fgf8a	fibroblast growth factor 8 a	0.037
furinb	furin (paired basic amino acid cleaving enzyme) b	0.037
hprt1	hypoxanthine phosphoribosyltransferase 1	0.037
wnt11	wingless-type MMTV integration site family, member 11	0.037
stra6	stimulated by retinoic acid gene 6 homolog (mouse)	0.036
ncf1	neutrophil cytosolic factor 1	0.035
tyrp1b	tyrosinase-related protein 1b	0.035
fn1	fibronectin 1	0.032
apoeb	apolipoprotein Eb	0.032
krt18	keratin 18	0.032
osr1	odd-skipped related 1 (Drosophila)	0.030
polr2d	polymerase (RNA) II (DNA directed) polypeptide D	0.030
rho	rhodopsin	0.030
fgf24	fibroblast growth factor 24	0.029
tbx5a	T-box 5a	0.029
bmp2b	bone morphogenetic protein 2b	0.029
egr1	early growth response 1	0.028
agxta	alanine-glyoxylate aminotransferase a	0.027
zgc:100919	zgc:100919	0.027
zgc:56548	zgc:56548	0.026
lgals9l1	lectin, galactoside-binding, soluble, 9 (galectin 9)-like 1	0.026
adra2b	adrenergic, alpha-2B-, receptor	0.026
cyp1a	cytochrome P450, family 1, subfamily A	0.025
nras	neuroblastoma RAS viral (v-ras) oncogene homolog	0.025
cebpa	CCAAT/enhancer binding protein (C/EBP), alpha	0.025
prdm16	PR domain containing 16	0.025
smoc1	SPARC related modular calcium binding 1	0.024
tbp	TATA box binding protein	0.024
gcga	glucagon a and glucagon a-like	0.024
lmo4a	LIM domain only 4a	0.024
hspb1	heat shock protein, alpha-crystallin-related, 1	0.024
slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	0.023
fadd	Fas (tnfrsf6)-associated via death domain	0.023
her1	hairy-related 1	0.022
b2m	beta-2-microglobulin	0.022
dact1	dapper homolog 1, antagonist of beta-catenin (xenopus)	0.022
tp53	tumor protein p53	0.022
pcdh18b	protocadherin 18b	0.021
si:ch211-93f2.1	si:ch211-93f2.1	0.021
si:dkey-53p21.1	si:dkey-53p21.1	0.021
slc3a2	solute carrier family 3, member 2	0.020
nme4	non-metastatic cells 4, protein expressed in	0.020
acta2	actin, alpha 2, smooth muscle, aorta	0.020
arl3l2	ADP-ribosylation factor-like 3, like 2	0.019
flrt3	fibronectin leucine rich transmembrane 3	0.019
cyp51	cytochrome P450, family 51	0.019
tbx2b	T-box 2b	0.019
ocrl	oculocerebrorenal syndrome of Lowe	0.018
prdm1a	PR domain containing 1a, with ZNF domain	0.018
foxl1	forkhead box L1	0.018
LOC100001321	hypothetical protein LOC100001321	0.018
cdk7	cyclin-dependent kinase 7	0.017
slc31a1	solute carrier family 31 (copper transporters), member 1	0.017
rgs4	regulator of G-protein signalling 4	0.016
mpp1	membrane protein, palmitoylated 1	0.016
ppp1r3ca	protein phosphatase 1, regulatory (inhibitor) subunit 3Ca	0.016
kdrl	kinase insert domain receptor like	0.016
lbx2	ladybird homeobox homolog 2 (Drosophila)	0.015
esrra	estrogen-related receptor alpha	0.015
bcdo2l	beta-carotene 15, 15-dioxygenase 2, like	0.015
cyp3c1	cytochrome P450, family 3, subfamily c, polypeptide 1	0.015
meis3	myeloid ecotropic viral integration site 3	0.015
rbp7b	retinol binding protein 7b, cellular	0.015
oep	one-eyed pinhead	0.015
slmo2	slowmo homolog 2 (Drosophila)	0.015
chst11	carbohydrate (chondroitin 4) sulfotransferase 11	0.015
pmelb	premelanosome protein b	0.014
itgb1b.1	integrin, beta 1b.1	0.014
acsl4a	acyl-CoA synthetase long-chain family member 4a	0.014
zgc:92406	zgc:92406	0.014
ctsc	cathepsin C	0.014
sb:cb1058	sb:cb1058	0.014
gdf6a	growth differentiation factor 6a	0.014
pnp6	purine nucleoside phosphorylase 6	0.014
mef2ca	myocyte enhancer factor 2ca	0.014
slc4a2b	solute carrier family 4, anion exchanger, member 2b	0.014
agt	angiotensinogen	0.013
gatm	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	0.013
cyp4v2	cytochrome P450, family 4, subfamily V, polypeptide 2	0.013
atp1a1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	0.013
msgn1	mesogenin 1	0.013
itpr3	inositol 1,4,5-triphosphate receptor, type 3	0.012
slc8a4a	solute carrier family 8 (sodium/calcium exchanger), member 4a	0.012
aqp8a.1	aquaporin 8a, tandem duplicate 1	0.012
mych	myelocytomatosis oncogene homolog	0.012
scp2	sterol carrier protein 2	0.012
hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase	0.012
kng1	kininogen 1	0.012
sat1a	spermidine/spermine N1-acetyltransferase 1a	0.012
aplnrb	apelin receptor b	0.012
gadd45aa	growth arrest and DNA-damage-inducible, alpha, a	0.012
bmpr1bb	bone morphogenetic protein receptor, type 1bb	0.011
fsta	follistatin a	0.011
lypd6	LY6/PLAUR domain containing 6	0.011
ints6	integrator complex subunit 6	0.011
bactin2	bactin2	0.011
baxa	bcl2-associated X protein, a	0.011
gclm	glutamate-cysteine ligase, modifier subunit	0.011
irx4a	iroquois homeobox protein 4a	0.011
lfng	lunatic fringe homolog	0.011
cyp1d1	cytochrome P450, family 1, subfamily D, polypeptide 1	0.011
baxb	bcl2-associated X protein, b	0.011
cx27.5	connexin 27.5	0.011
ednra	endothelin receptor type A	0.011
rarab	retinoic acid receptor, alpha b	0.011
six1a	sine oculis homeobox homolog 1a	0.011
irbp	interphotoreceptor retinoid-binding protein	0.011
rx1	retinal homeobox gene 1	0.011
rdh12	retinol dehydrogenase 12 (all-trans and 9-cis)	0.011
spry2	sprouty homolog 2	0.011
mep1a.1	meprin A, alpha.1	0.010
cldn15a	claudin 15a	0.010
pck2	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	0.010
si:dkey-261h17.1	si:dkey-261h17.1	0.010
hgd	homogentisate 1,2-dioxygenase	0.010
scpep1	serine carboxypeptidase 1	0.010
osr2	odd-skipped related 2 (Drosophila)	0.010
pp	pyrophosphatase (inorganic)	0.010
LOC100002342	carboxypeptidase A6-like	0.010
arr3a	arrestin 3a, retinal (X-arrestin)	0.010