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Process View

Danio rerio

1 genes annotated in zebrafish

Multi-species View

forebrain dorsal ventral pattern formation

GO:0021798

The formation of specific regional progenitor domains along the dorsal-ventral axis in the developing forebrain.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "forebrain dorsal ventral pattern formation"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "forebrain dorsal ventral pattern formation" (in gray)

Name	Description	Probability	Func Analog Organism
pax2a	paired box gene 2a	0.998
fgf8a	fibroblast growth factor 8 a	0.992	Mouse
shha	sonic hedgehog a	0.990
cdh2	cadherin 2, neuronal	0.925
otx2	orthodenticle homolog 2	0.893
fgf3	fibroblast growth factor 3	0.748
rx3	retinal homeobox gene 3	0.737
dla	deltaA	0.682
pax6b	paired box gene 6b	0.675	Mouse
six3b	sine oculis homeobox homolog 3b	0.619
tfap2a	transcription factor AP-2 alpha	0.583
isl1	islet1	0.579
nkx2.2a	NK2 transcription factor related 2a	0.563
ascl1a	achaete-scute complex-like 1a (Drosophila)	0.511
sox2	SRY-box containing gene 2	0.469
barhl2	BarH-like 2	0.452
zic2a	zic family member 2 (odd-paired homolog, Drosophila), a	0.389
flh	floating head	0.387
cadm3	cell adhesion molecule 3	0.284
neurog1	neurogenin 1	0.261
six3a	sine oculis homeobox homolog 3a	0.257	Human
otx1b	orthodenticle homolog 1b	0.250
fezf2	FEZ family zinc finger 2	0.246
olig2	oligodendrocyte lineage transcription factor 2	0.246
foxi1	forkhead box I1	0.242
dlx3b	distal-less homeobox gene 3b	0.190
hnf1ba	HNF1 homeobox Ba	0.183
eng2b	engrailed 2b	0.177
cdx4	caudal type homeo box transcription factor 4	0.170
nr2e1	nuclear receptor subfamily 2, group E, member 1	0.157
dld	deltaD	0.156
st8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	0.155
irx7	iroquois homeobox protein 7	0.146
mib	mind bomb	0.144
her8a	hairy-related 8a	0.139
neurod	neurogenic differentiation	0.126
foxd3	forkhead box D3	0.126
zic1	zic family member 1 (odd-paired homolog, Drosophila)	0.123
bhlhe22	basic helix-loop-helix family, member e22	0.116
gli2a	GLI-Kruppel family member GLI2a	0.115
wnt11	wingless-type MMTV integration site family, member 11	0.113
foxg1a	forkhead box G1a	0.112
gbx2	gastrulation brain homeo box 2	0.110
chd	chordin	0.106
bmp2b	bone morphogenetic protein 2b	0.098
tbx16	T-box gene 16	0.095
emx3	empty spiracles homeobox 3	0.092
irx1b	iroquois homeobox protein 1, b	0.081
lhx1a	LIM homeobox 1a	0.076
gli1	GLI-Kruppel family member 1	0.072
otx1a	orthodenticle homolog 1a	0.069
eng2a	engrailed 2a	0.067
ascl1b	achaete-scute complex-like 1b (Drosophila)	0.066
her6	hairy-related 6	0.065
otpb	orthopedia homolog b	0.063
sox9a	SRY-box containing gene 9a	0.063
sp5l	Sp5 transcription factor-like	0.061
mdkb	midkine-related growth factor b	0.058
ndr2	nodal-related 2	0.058
meis2.1	myeloid ecotropic viral integration site 2.1	0.056
ptch2	patched 2	0.056
lhx5	LIM homeobox 5	0.052
boc	brother of CDO	0.050
smo	smoothened homolog (Drosophila)	0.050
tbx1	T-box 1	0.049
dmbx1a	diencephalon/mesencephalon homeobox 1a	0.048
ntla	no tail a	0.047
tbx2b	T-box 2b	0.045
elavl3	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	0.044
sox1a	SRY-box containing gene 1a	0.043
ptch1	patched 1	0.042
foxp2	forkhead box P2	0.041
smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.037
hoxb1b	homeo box B1b	0.034
ephb3a	eph receptor B3a	0.034
neurod4	neurogenic differentiation 4	0.033
notch1a	notch homolog 1a	0.031
sox3	SRY-box containing gene 3	0.031
oep	one-eyed pinhead	0.031
meis2.2	myeloid ecotropic viral integration site 2.2	0.030
epha4b	eph receptor A4b	0.030
raraa	retinoic acid receptor, alpha a	0.029
zic3	zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila)	0.028
aldh1a2	aldehyde dehydrogenase 1 family, member A2	0.028
sox10	SRY-box containing gene 10	0.028
med12	mediator of RNA polymerase II transcription, subunit 12 homolog	0.028
tbx24	T-box 24	0.028
hoxa9a	homeo box A9a	0.026
fzd10	frizzled homolog 10	0.026
lft1	lefty1	0.025
dlx2a	distal-less homeobox gene 2a	0.024
bmp4	bone morphogenetic protein 4	0.024
efnb2a	ephrin B2a	0.024
cyp26a1	cytochrome P450, subfamily XXVIA, polypeptide 1	0.024
lhx2b	LIM homeobox 2b	0.023
tp53	tumor protein p53	0.022
her3	hairy-related 3	0.022
ptpro	protein tyrosine phosphatase, receptor type, O	0.021
gsc	goosecoid	0.021
fzd8a	frizzled homolog 8a	0.020
robo2	roundabout homolog 2	0.018
nkx2.1a	NK2 homeobox 1a	0.018
mab21l2	mab-21-like 2	0.018
wnt5b	wingless-type MMTV integration site family, member 5b	0.018
dlc	deltaC	0.017
nxph1	neurexophilin 1	0.017
rfx2	regulatory factor X, 2 (influences HLA class II expression)	0.017
fgf8b	fibroblast growth factor 8 b	0.016	Mouse
foxa2	forkhead box A2	0.016
gdf6a	growth differentiation factor 6a	0.016
her5	hairy-related 5	0.016
cxcr4a	chemokine (C-X-C motif) receptor 4a	0.015
olig3	oligodendrocyte transcription factor 3	0.015
dnmt3	DNA (cytosine-5-)-methyltransferase 3	0.015
pcdh10b	protocadherin 10b	0.014
hesx1	homeo box (expressed in ES cells) 1	0.013
irx1a	iroquois homeobox protein 1, a	0.013
six4b	sine oculis homeobox homolog 4b	0.012
rarab	retinoic acid receptor, alpha b	0.012
pou3f1	POU class 3 homeobox 1	0.012
hoxd4a	homeo box D4a	0.012
sfrp5	secreted frizzled-related protein 5	0.011
gbx1	gastrulation brain homeobox 1	0.011
eomesa	eomesodermin homolog a	0.011
meis1	myeloid ecotropic viral integration 1	0.011
alcamb	activated leukocyte cell adhesion molecule b	0.011
dlx4b	distal-less homeobox gene 4b	0.010
vasa	vasa homolog	0.010
prdm1a	PR domain containing 1a, with ZNF domain	0.010
th	tyrosine hydroxylase	0.010
trpm7	transient receptor potential cation channel, subfamily M, member 7	0.010
epha4a	eph receptor A4a	0.010