IMP

Process View

Mus musculus

8 genes annotated in mouse

trachea morphogenesis

The process in which a trachea is generated and organized. The trachea is the portion of the airway that attaches to the bronchi as it branches.

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In addition to gene-name show these genes:

Known genes in the process in mouse Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "trachea morphogenesis"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "trachea morphogenesis" (in gray)

Name	Description	Probability	Func Analog Organism
Shh	sonic hedgehog	1.000
Fgfr2	fibroblast growth factor receptor 2	0.999	Fly
Rarg	retinoic acid receptor, gamma	0.916
Bmp4	bone morphogenetic protein 4	0.906
Pax2	paired box gene 2	0.773
Gli3	GLI-Kruppel family member GLI3	0.765
Hoxb3	homeobox B3	0.710
Sox9	SRY-box containing gene 9	0.707
Fgf8	fibroblast growth factor 8	0.698
Chrd	chordin	0.692
Msx1	homeobox, msh-like 1	0.678
Foxc1	forkhead box C1	0.670
Pbx1	pre B-cell leukemia transcription factor 1	0.661
Apc	adenomatosis polyposis coli	0.616
Hoxa5	homeobox A5	0.613
Bmp7	bone morphogenetic protein 7	0.594
Pax8	paired box gene 8	0.529
Hoxb6	homeobox B6	0.510	Mouse
Hoxb5	homeobox B5	0.505	Mouse
Hoxa2	homeobox A2	0.505
Rara	retinoic acid receptor, alpha	0.478
Lhx1	LIM homeobox protein 1	0.441
Rarb	retinoic acid receptor, beta	0.404
Nodal	nodal	0.374
Hoxa3	homeobox A3	0.372
Hoxd3	homeobox D3	0.370
Prrx1	paired related homeobox 1	0.366
Tbx1	T-box 1	0.365
Hoxc5	homeobox C5	0.356	Mouse
Dkk1	dickkopf homolog 1 (Xenopus laevis)	0.345
Gli2	GLI-Kruppel family member GLI2	0.329
Ror2	receptor tyrosine kinase-like orphan receptor 2	0.324
Tgfbr2	transforming growth factor, beta receptor II	0.280
Fgfr3	fibroblast growth factor receptor 3	0.261	Fly
Prrx2	paired related homeobox 2	0.258
Hoxa9	homeobox A9	0.240
Hoxa1	homeobox A1	0.239
Hoxd9	homeobox D9	0.225
Ctnnb1	catenin (cadherin associated protein), beta 1	0.218
Acvr1	activin A receptor, type 1	0.211	Mouse
Hoxc8	homeobox C8	0.202	Mouse
Six1	sine oculis-related homeobox 1 homolog (Drosophila)	0.202
Hoxa11	homeobox A11	0.189
Wt1	Wilms tumor 1 homolog	0.184
Hoxd11	homeobox D11	0.175
Smo	smoothened homolog (Drosophila)	0.174
Pdgfra	platelet derived growth factor receptor, alpha polypeptide	0.166
Fgf10	fibroblast growth factor 10	0.163
Dlx5	distal-less homeobox 5	0.133
Epas1	endothelial PAS domain protein 1	0.127
Wnt4	wingless-related MMTV integration site 4	0.126	Mouse
Hoxd4	homeobox D4	0.115	Mouse
Hoxa10	homeobox A10	0.108
Smad4	MAD homolog 4 (Drosophila)	0.107
Twist2	twist homolog 2 (Drosophila)	0.106
Tgfb2	transforming growth factor, beta 2	0.106
Hand1	heart and neural crest derivatives expressed transcript 1	0.103
Tcfap2a	transcription factor AP-2, alpha	0.100
Kl	klotho	0.097
Fgfr1	fibroblast growth factor receptor 1	0.094	Fly
Vegfa	vascular endothelial growth factor A	0.091
Foxc2	forkhead box C2	0.086
Ednra	endothelin receptor type A	0.082
Eya1	eyes absent 1 homolog (Drosophila)	0.080
Gdnf	glial cell line derived neurotrophic factor	0.078
Hoxb9	homeobox B9	0.062
Bnc1	basonuclin 1	0.059
Tbx3	T-box 3	0.057
Hoxb2	homeobox B2	0.055
Otx1	orthodenticle homolog 1 (Drosophila)	0.055
Hoxc6	homeobox C6	0.054	Mouse
Hoxc9	homeobox C9	0.054
Ptch1	patched homolog 1	0.053
Gli1	GLI-Kruppel family member GLI1	0.049
Bmp2	bone morphogenetic protein 2	0.049	Mouse
Hoxd10	homeobox D10	0.047
Hoxb4	homeobox B4	0.046	Mouse
Tcf21	transcription factor 21	0.046
Pax3	paired box gene 3	0.046
Foxd2	forkhead box D2	0.043
Nf2	neurofibromatosis 2	0.042
Hoxa7	homeobox A7	0.039	Mouse
Bmpr1a	bone morphogenetic protein receptor, type 1A	0.039	Mouse
Foxa2	forkhead box A2	0.036
Hand2	heart and neural crest derivatives expressed transcript 2	0.035
Lmx1a	LIM homeobox transcription factor 1 alpha	0.035
Alx4	aristaless-like homeobox 4	0.034
Zeb1	zinc finger E-box binding homeobox 1	0.034
Hoxb8	homeobox B8	0.033	Mouse
Rxra	retinoid X receptor alpha	0.033
Pitx1	paired-like homeodomain transcription factor 1	0.032
Hoxa4	homeobox A4	0.032	Mouse
Mapk8ip1	mitogen-activated protein kinase 8 interacting protein 1	0.031
Hoxc4	homeobox C4	0.031	Mouse
Smad6	MAD homolog 6 (Drosophila)	0.031
Foxf1a	forkhead box F1a	0.030
Gsc	goosecoid homeobox	0.029
Emx2	empty spiracles homolog 2 (Drosophila)	0.029
Gata3	GATA binding protein 3	0.029
Aldh1a2	aldehyde dehydrogenase family 1, subfamily A2	0.027
Wnt5a	wingless-related MMTV integration site 5A	0.027	Mouse
Atp7a	ATPase, Cu++ transporting, alpha polypeptide	0.027
Tbx2	T-box 2	0.026
Ihh	Indian hedgehog	0.025	Mouse
Smad3	MAD homolog 3 (Drosophila)	0.025
Gpc3	glypican 3	0.024
Axin1	axin 1	0.024
Lrp2	low density lipoprotein receptor-related protein 2	0.023	Mouse
Zfp503	zinc finger protein 503	0.023
Gm13290	predicted gene 13290	0.023
Alx3	aristaless-like homeobox 3	0.023
Pax9	paired box gene 9	0.022
Vcl	vinculin	0.022
Wnt6	wingless-related MMTV integration site 6	0.022	Mouse
Gdf1	growth differentiation factor 1	0.021	Mouse
Efnb1	ephrin B1	0.021
Hoxa13	homeobox A13	0.020
Ctnnd1	catenin (cadherin associated protein), delta 1	0.019
Zic3	zinc finger protein of the cerebellum 3	0.018
Hoxd8	homeobox D8	0.018	Mouse
Col4a3	collagen, type IV, alpha 3	0.018
Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	0.017
Meis1	Meis homeobox 1	0.016
Nr5a1	nuclear receptor subfamily 5, group A, member 1	0.016
Jag1	jagged 1	0.016
Runx2	runt related transcription factor 2	0.016
Sox7	SRY-box containing gene 7	0.015
T	brachyury	0.015
Ece1	endothelin converting enzyme 1	0.015
Eng	endoglin	0.015
Tbx15	T-box 15	0.015
Cdkn2a	cyclin-dependent kinase inhibitor 2A	0.015
Ar	androgen receptor	0.014
Tsc2	tuberous sclerosis 2	0.014
Fzd8	frizzled homolog 8 (Drosophila)	0.014
Hspg2	perlecan (heparan sulfate proteoglycan 2)	0.014
Six4	sine oculis-related homeobox 4 homolog (Drosophila)	0.014
Gbx2	gastrulation brain homeobox 2	0.013
Bmper	BMP-binding endothelial regulator	0.013
Egfr	epidermal growth factor receptor	0.012
Hoxd13	homeobox D13	0.012
Pou3f3	POU domain, class 3, transcription factor 3	0.012
Sim2	single-minded homolog 2 (Drosophila)	0.012
Zbtb16	zinc finger and BTB domain containing 16	0.012
En1	engrailed 1	0.011
Lef1	lymphoid enhancer binding factor 1	0.011
Gsk3b	glycogen synthase kinase 3 beta	0.011
Nf1	neurofibromatosis 1	0.011
Nos3	nitric oxide synthase 3, endothelial cell	0.011
Hsd11b2	hydroxysteroid 11-beta dehydrogenase 2	0.011
Hmx3	H6 homeobox 3	0.011
Pcsk5	proprotein convertase subtilisin/kexin type 5	0.011
Otx2	orthodenticle homolog 2 (Drosophila)	0.010
Tgfbr3	transforming growth factor, beta receptor III	0.010
Efnb2	ephrin B2	0.010
Diablo	diablo homolog (Drosophila)	0.010