IMP

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Danio rerio

3 genes annotated in zebrafish

posttranscriptional gene silencing by rna

Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "posttranscriptional gene silencing by rna"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "posttranscriptional gene silencing by rna" (in gray)

Name	Description	Probability	Func Analog Organism
hnrnpl2	heterogeneous nuclear ribonucleoprotein L2	0.121
actl6a	actin-like 6A	0.113
khdrbs1a	KH domain containing, RNA binding, signal transduction associated 1a	0.101
nanos3	nanos homolog 3	0.089
diexf	digestive organ expansion factor homolog	0.089
ccnb1	cyclin B1	0.087
hspd1	heat shock 60kD protein 1 (chaperonin)	0.084
hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.074
tbx1	T-box 1	0.067
gro1	groucho 1	0.065
LOC570775	protein argonaute-1-like	0.060
cdk8	cyclin-dependent kinase 8	0.054
nolc1	nucleolar and coiled-body phosphoprotein 1	0.053
smarce1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	0.051
pes	pescadillo	0.050
zgc:101724	zgc:101724	0.045
sulf1	sulfatase 1	0.042
ppm1g	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	0.039
gro2	groucho 2	0.039
atp1a1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	0.039
elavl1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	0.036
ewsr1b	Ewing sarcoma breakpoint region 1b	0.035
atic	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	0.035
ppp2r1a	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.034	Worm
ncl	nucleolin	0.029
atp6v1h	ATPase, H+ transporting, lysosomal, V1 subunit H	0.029
si:ch211-197h24.6	si:ch211-197h24.6	0.028
sf1	splicing factor 1	0.028
whsc1	Wolf-Hirschhorn syndrome candidate 1	0.028
e2f5	E2F transcription factor 5	0.028
zgc:158399	zgc:158399	0.027
ssrp1a	structure specific recognition protein 1a	0.027
ahctf1	AT hook containing transcription factor 1	0.027
wu:fa97a01	wu:fa97a01	0.027
pwp2h	PWP2 periodic tryptophan protein homolog (yeast)	0.027
rbmx	RNA binding motif protein, X-linked	0.027
atp6v1d	ATPase, H+ transporting, V1 subunit D and ATPase, H+ transporting, V1 subunit D	0.026
ran	ras-related nuclear protein	0.026
barx1	BarH-like homeobox 1	0.025
casc3	cancer susceptibility candidate 3	0.025
zgc:110113	zgc:110113	0.024
usp10	ubiquitin specific peptidase 10	0.024
acvr1b	activin A receptor, type IB	0.024
rbb4	retinoblastoma binding protein 4	0.024	Worm
slc9a3.2	solute carrier family 9 (sodium/hydrogen exchanger), member 3.2	0.023
cad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	0.023
tp53	tumor protein p53	0.023
nin	ninein (GSK3B interacting protein)	0.023
srsf2	serine/arginine-rich splicing factor 2	0.023
psmb3	proteasome (prosome, macropain) subunit, beta type, 3	0.023
scaf11	SR-related CTD-associated factor 11	0.022
nono	non-POU domain containing, octamer-binding	0.022
mapk3	mitogen-activated protein kinase 3	0.022
ryr1b	ryanodine receptor 1b (skeletal)	0.022
cyc1	cytochrome c-1	0.021
hspa9	heat shock protein 9	0.021
csnk1a1	casein kinase 1, alpha 1	0.021
dlat	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	0.021
slit1b	slit homolog 1b (Drosophila)	0.021
g3bp1	GTPase activating protein (SH3 domain) binding protein 1	0.021
khdrbs1b	KH domain containing, RNA binding, signal transduction associated 1b	0.021
ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.020
k23	k23 gene	0.020
ddx18	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.020
nf1b	neurofibromin 1b	0.020
tia1l	cytotoxic granule-associated RNA binding protein 1, like	0.020
exosc4	exosome component 4	0.020
puf60b	poly-U binding splicing factor b	0.020
nf1a	neurofibromin 1a	0.020
vcp	valosin containing protein	0.020
rtf1	Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.020
tmem48	transmembrane protein 48	0.020
fgf20a	fibroblast growth factor 20a	0.019
srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.019	Human Mouse
ef1a	elongation factor 1-alpha	0.019
extl3	exostoses (multiple)-like 3	0.019
eftud2	elongation factor Tu GTP binding domain containing 2	0.019
ssr2	signal sequence receptor, beta	0.019
rpe	ribulose-5-phosphate-3-epimerase	0.019
hsp90ab1	heat shock protein 90, alpha (cytosolic), class B member 1	0.019
ss18	synovial sarcoma translocation, chromosome 18 (H. sapiens)	0.018
supt5h	suppressor of Ty 5 homolog (S. cerevisiae)	0.018
zgc:77052	zgc:77052	0.018
cirh1a	cirrhosis, autosomal recessive 1A (cirhin)	0.018
krit1	KRIT1, ankyrin repeat containing	0.018
tmpoa	thymopoietin a	0.018
eif4a3	eukaryotic translation initiation factor 4A, isoform 3	0.018
zgc:136871	zgc:136871	0.017
dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	0.017
flr	fleer	0.017
ywhaqa	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide a	0.017
sh3bp5	SH3-domain binding protein 5 (BTK-associated)	0.017
anp32e	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.016
marcksb	myristoylated alanine rich protein kinase C substrate b	0.016
akt2	v-akt murine thymoma viral oncogene homolog 2	0.016
prkci	protein kinase C, iota	0.016
sec31a	sec31 homolog A (S. cerevisiae)	0.016
mthfd2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	0.016
wu:fb71f10	wu:fb71f10	0.016
pcbp2	poly(rC) binding protein 2	0.016
otul	OTU like protein	0.016
max	myc-associated factor X	0.016
sec13	SEC13 homolog (S. cerevisiae)	0.016
zgc:65979	zgc:65979	0.016
ssb	Sjogren syndrome antigen B (autoantigen La)	0.016
birc5b	baculoviral IAP repeat-containing 5B	0.016
tie2	endothelium-specific receptor tyrosine kinase 2	0.016
atp6v1g1	ATPase, H+ transporting, V1 subunit G isoform 1	0.015
stat1b	signal transducer and activator of transcription 1b	0.015
vasa	vasa homolog	0.015
akap12b	A kinase (PRKA) anchor protein (gravin) 12b	0.015
ccnk	cyclin K	0.015
mxa	myxovirus (influenza) resistance A	0.015
igf1rb	insulin-like growth factor 1b receptor	0.015
oep	one-eyed pinhead	0.015
ezh2	enhancer of zeste homolog 2 (Drosophila)	0.015
ppp1r12a	protein phosphatase 1, regulatory (inhibitor) subunit 12A	0.015
eif4a1a	eukaryotic translation initiation factor 4A, isoform 1A	0.015
heatr3	HEAT repeat containing 3	0.015
ints6	integrator complex subunit 6	0.015
igf3	insulin-like growth factor 3	0.015
rbm17	RNA binding motif protein 17	0.014
zgc:109736	zgc:109736	0.014
rpl7l1	ribosomal protein L7-like 1	0.014
snrpc	small nuclear ribonucleoprotein polypeptide C	0.014
wdr43	WD repeat domain 43	0.014
acin1a	apoptotic chromatin condensation inducer 1a	0.014
qars	glutaminyl-tRNA synthetase	0.014
rpa3	replication protein A3	0.014
zgc:152873	zgc:152873	0.014
sdad1	SDA1 domain containing 1	0.014
tmem2	transmembrane protein 2	0.014
sfrs3b	splicing factor, arginine/serine-rich 3b	0.014
ywhabb	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide b	0.014
si:ch211-114c12.2	si:ch211-114c12.2	0.014
zgc:92139	zgc:92139	0.014
her15.2	hairy and enhancer of split-related 15.2	0.014
metap1	methionyl aminopeptidase 1	0.014
si:dkey-22l11.5	si:dkey-22l11.5	0.014
rb1	retinoblastoma 1	0.014
axin1	axin 1	0.013
ctcf	CCCTC-binding factor (zinc finger protein)	0.013
ogdh	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	0.013
zgc:55461	zgc:55461	0.013
ndr1	nodal-related 1	0.013
calm3b	calmodulin 3b (phosphorylase kinase, delta)	0.013
cenph	centromere protein H	0.013
hnrpr	heterogeneous nuclear ribonucleoprotein R	0.013
ext2	exostoses (multiple) 2	0.013
sephs1	selenophosphate synthetase 1	0.013
serpinf1	serine (or cysteine) peptidase inhibitor, clade F, member 1	0.013
hnrnpa0l	heterogeneous nuclear ribonucleoprotein A0, like	0.013
cables1	Cdk5 and Abl enzyme substrate 1	0.013
grwd1	glutamate-rich WD repeat containing 1	0.012
gps1	G protein pathway suppressor 1	0.012
ankrd13c	ankyrin repeat domain 13C	0.012
smo	smoothened homolog (Drosophila)	0.012
si:ch211-59d15.5	si:ch211-59d15.5	0.012
hells	helicase, lymphoid-specific	0.012
nos2b	nitric oxide synthase 2b, inducible	0.012
bactin2	bactin2	0.012
apoa4	apolipoprotein A-IV	0.012
ext1b	exostoses (multiple) 1b	0.012
upf1	upf1 regulator of nonsense transcripts homolog (yeast)	0.012	Worm
smg1	PI-3-kinase-related kinase SMG-1	0.012
zgc:193933	zgc:193933	0.012
zgc:56304	zgc:56304	0.012
mos	v-mos Moloney murine sarcoma viral oncogene homolog	0.012
ppp2r2d	protein phosphatase 2, regulatory subunit B, delta isoform	0.012
rbm19	RNA binding motif protein 19	0.012
ppp1cbl	protein phosphatase 1, catalytic subunit, beta isoform, like	0.012
mtch2	mitochondrial carrier homolog 2	0.012
prnprs1	prion protein, related sequence 1	0.012
polr2d	polymerase (RNA) II (DNA directed) polypeptide D	0.012
si:dkeyp-7c9.1	si:dkeyp-7c9.1	0.012
snrpa	small nuclear ribonucleoprotein polypeptide A	0.012	Worm
atp6v1e1b	ATPase, H+ transporting, lysosomal, V1 subunit E isoform 1b	0.012
gpr161	G protein-coupled receptor 161	0.012
srrm1	serine/arginine repetitive matrix 1	0.012
smarcal1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	0.012
cnot1	CCR4-NOT transcription complex, subunit 1	0.012
zff9	zinc finger protein 9	0.012
prkd1	protein kinase D1	0.011
ewsr1a	Ewing sarcoma breakpoint region 1a	0.011
og9x	OG9 homeobox gene	0.011
pgam5	phosphoglycerate mutase family member 5	0.011
wdr82	WD repeat domain containing 82	0.011
fzd8b	frizzled homolog 8b	0.011
raver1	ribonucleoprotein, PTB-binding 1	0.011
kpna2	karyopherin alpha 2 (RAG cohort 1, importin alpha 1)	0.011
msto1	misato homolog 1 (Drosophila)	0.011
srsf11	serine/arginine-rich splicing factor 11	0.011	Worm
eif1b	eukaryotic translation initiation factor 1B	0.011
prpf8	pre-mRNA processing factor 8	0.011
pold1	polymerase (DNA directed), delta 1, catalytic subunit	0.011
ssrp1b	structure specific recognition protein 1b	0.011
bat1	HLA-B associated transcript 1	0.011
sf3b1	splicing factor 3b, subunit 1	0.011
polr3b	polymerase (RNA) III (DNA directed) polypeptide B	0.011
etfa	electron-transfer-flavoprotein, alpha polypeptide	0.011
si:ch211-255l12.1	si:ch211-255l12.1	0.011
aurkb	aurora kinase B	0.011
atp6v1ba	ATPase, H+ transporting, lysosomal, V1 subunit B, member a	0.011
zgc:163064	zgc:163064	0.011
slit1a	slit homolog 1a (Drosophila)	0.011
mcm4	MCM4 minichromosome maintenance deficient 4, mitotin (S. cerevisiae)	0.011
zgc:110682	zgc:110682	0.011
mrps31	mitochondrial ribosomal protein S31	0.011
ptges	prostaglandin E synthase	0.011
drg1	developmentally regulated GTP binding protein 1	0.011
setb	SET translocation (myeloid leukemia-associated) B	0.011
oaz2b	ornithine decarboxylase antizyme 2b	0.011
acvr1l	activin A receptor, type I like	0.010
wnt2bb	wingless-type MMTV integration site family, member 2Bb	0.010
zgc:113312	zgc:113312	0.010
adkb	adenosine kinase b	0.010
fbxw7	F-box and WD repeat domain containing 7	0.010
nphs1l	nephrosis 1, congenital, Finnish type (nephrin)-like	0.010
ehd1	EH-domain containing 1	0.010
map2k4b	mitogen-activated protein kinase kinase 4b	0.010
ddx42	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	0.010
zgc:86811	zgc:86811	0.010
smc1al	structural maintenance of chromosomes 1A, like	0.010
leo1	Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.010
chtopa	chromatin target of PRMT1a	0.010
pcsk1	proprotein convertase subtilisin/kexin type 1	0.010
magoh	mago-nashi homolog, proliferation-associated (Drosophila)	0.010
ecd	ecdysoneless homolog (Drosophila)	0.010
lppr3b	lipid phosphate phosphatase-related protein type 3b	0.010
srsf4	serine/arginine-rich splicing factor 4	0.010
impdh2	IMP (inosine monophosphate) dehydrogenase 2	0.010
mta3	metastasis associated family, member 3	0.010
tardbpl	TAR DNA binding protein, like	0.010
sart1	squamous cell carcinoma antigen recognised by T cells	0.010
actr6	ARP6 actin-related protein 6 homolog (yeast)	0.010
eif6	eukaryotic translation initiation factor 6	0.010
fanca	Fanconi anemia, complementation group A	0.010