IMP

Process View

Danio rerio

1 genes annotated in zebrafish

Multi-species View

collagen fibril organization

GO:0030199

Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix.

Loading network...

In addition to gene-name show these genes:

Known genes in the process in zebrafish Include functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "collagen fibril organization"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "collagen fibril organization" (in gray)

Name	Description	Probability	Func Analog Organism
col1a1a	collagen, type I, alpha 1a	0.961	Human
col1a2	collagen, type I, alpha 2	0.950	Human
col5a1	procollagen, type V, alpha 1	0.932	Human Mouse
sparc	secreted acidic cysteine rich glycoprotein	0.812
col5a2l	collagen, type V, alpha 2-like	0.745	Human Mouse
dcn	decorin	0.681	Zebrafish
col10a1	collagen, type X, alpha 1	0.557
postn	periostin, osteoblast specific factor	0.504
olfml3b	olfactomedin-like 3b	0.474
col1a1b	collagen, type I, alpha 1b	0.462	Human
tagln2	transgelin 2	0.388
matn4	matrilin 4	0.360
plod1a	procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1a	0.293
mmp14a	matrix metalloproteinase 14a (membrane-inserted)	0.174
col11a1b	collagen type XI alpha-1b and collagen, type XI, alpha 1b	0.155
s100a10b	S100 calcium binding protein A10b	0.154
zgc:55418	zgc:55418	0.139
col12a1	collagen, type XII, alpha 1	0.133
serpinf1	serine (or cysteine) peptidase inhibitor, clade F, member 1	0.124
nf1a	neurofibromin 1a	0.118	Mouse
cnn2	calponin 2	0.113
pmp22a	peripheral myelin protein 22a	0.108
xylt1	xylosyltransferase 1	0.099
thbs1	thrombospondin 1	0.097
lox	lysyl oxidase	0.096	Mouse
col6a3	collagen, type VI, alpha 3	0.091
anxa1a	annexin A1a	0.089
tcf7	transcription factor 7 (T-cell specific, HMG-box)	0.089
plod2	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	0.087
fn1b	fibronectin 1b	0.086
pdgfrl	platelet-derived growth factor receptor-like	0.084
cdh4	cadherin 4, retinal	0.084
col6a2	collagen, type VI, alpha 2	0.080
mmp2	matrix metalloproteinase 2	0.077
ecrg4a	esophageal cancer related gene 4a	0.075
tbx22	T-box 22	0.072
prrx1a	paired related homeobox 1a	0.070
alpi	alkaline phosphatase, intestinal	0.062
spon2b	spondin 2b, extracellular matrix protein	0.061
enpp1	ectonucleotide pyrophosphatase/phosphodiesterase 1	0.060
prrx1b	paired related homeobox 1b	0.059
vcanb	versican b	0.058
twist2	twist2	0.056
lmna	lamin A	0.055
frzb	frizzled-related protein	0.051
tgfbi	transforming growth factor, beta-induced	0.050
zgc:111821	zgc:111821	0.050
nf1b	neurofibromin 1b	0.050	Mouse
LOC100000687	signal peptide, CUB and EGF-like domain-containing protein 3-like	0.049
ehd2	EH-domain containing 2	0.048
thbs4b	thrombospondin 4b	0.047
si:dkey-22i16.3	si:dkey-22i16.3	0.043
copa	coatomer protein complex, subunit alpha	0.043
dlx5a	distal-less homeobox gene 5a	0.043
pax9	paired box gene 9	0.042
rpz	rapunzel	0.041
col27a1a	collagen, type XXVII, alpha 1a	0.040
LOC100000500	sclerostin-like	0.040
lhfp	lipoma HMGIC fusion partner	0.040
hapln1a	hyaluronan and proteoglycan link protein 1a	0.039
pdlim4	PDZ and LIM domain 4	0.038
zgc:85975	zgc:85975	0.037
zgc:114201	zgc:114201	0.036
lrrc17	leucine rich repeat containing 17	0.035
matn1	matrilin 1	0.035
rpl35	ribosomal protein L35	0.034
sema3d	semaphorin 3d	0.033
ssr3	signal sequence receptor, gamma	0.031
ptrfb	polymerase I and transcript release factor b	0.031
zgc:112329	zgc:112329	0.028
ccl25b	chemokine (C-C motif) ligand 25b	0.028
si:ch211-173b8.2	si:ch211-173b8.2	0.028
rcn3	reticulocalbin 3, EF-hand calcium binding domain	0.027
zgc:85866	zgc:85866	0.027
tsc2	tuberous sclerosis 2	0.026
si:ch73-60e21.1	si:ch73-60e21.1	0.026
bmp1a	bone morphogenetic protein 1a	0.026
col11a1a	collagen, type XI, alpha 1a	0.026	Mouse
ldb2b	LIM-domain binding factor 2b	0.026
igfbp3	insulin-like growth factor binding protein 3	0.025
angptl7	angiopoietin-like 7	0.025
surf4l	surfeit gene 4, like	0.025
fbn2b	fibrillin 2b	0.024
wu:fj39b01	wu:fj39b01	0.024
foxa	forkhead box A sequence	0.024
lhx6	LIM homeobox 6	0.024
si:ch211-212m21.5	si:ch211-212m21.5	0.024
c8a	complement component 8, alpha polypeptide	0.024
fgf20a	fibroblast growth factor 20a	0.023
hsp47	heat shock protein 47	0.022	Mouse
dlx4a	distal-less homeobox gene 4a	0.022
tgfb3	transforming growth factor, beta 3	0.022
zgc:92411	zgc:92411	0.022
sulf2l	sulfatase 2, like	0.021
ctsk	cathepsin K	0.021
slco2b1	solute carrier organic anion transporter family, member 2B1	0.021
lmx1b.2	LIM homeobox transcription factor 1, beta 2	0.021
vdra	vitamin D receptor a	0.021
xirp2a	xin actin-binding repeat containing 2a	0.021
si:dkey-12o15.1	si:dkey-12o15.1	0.021
ctgf	connective tissue growth factor	0.020
si:ch73-6k14.1	si:ch73-6k14.1	0.020
hspa12b	heat shock protein 12B	0.020
emilin1b	elastin microfibril interfacer 1b	0.020
ext1b	exostoses (multiple) 1b	0.020
wnt9b	wingless-type MMTV integration site family, member 9B	0.020
wnt11r	wingless-type MMTV integration site family, member 11, related	0.019
wnt7ba	wingless-type MMTV integration site family, member 7Ba	0.019
ywhai	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, iota polypeptide	0.019
ptpra	protein tyrosine phosphatase, receptor type, A	0.019
acana	aggrecan a	0.019
cdh11	cadherin 11, osteoblast	0.019
LOC557062	hypothetical protein LOC557062	0.019
runx2a	runt-related transcription factor 2a	0.018
zgc:92360	zgc:92360	0.018
lhx2b	LIM homeobox 2b	0.018
slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	0.018
actn1	actinin, alpha 1	0.017
zgc:92533	zgc:92533	0.017
cfdl	complement factor D (adipsin) like	0.017
srd5a2a	steroid-5-alpha-reductase, alpha polypeptide 2a	0.017
angptl5	angiopoietin-like 5	0.017
fkbp10	FK506 binding protein 10	0.017
notch2	notch homolog 2	0.017
zgc:64119	zgc:64119	0.017
wnt2bb	wingless-type MMTV integration site family, member 2Bb	0.017
slc8a4b	solute carrier family 8 (sodium/calcium exchanger), member 4b	0.017
six2a	sine oculis-related homeobox 2a	0.016
vlk	vertebrate lonesome kinase	0.016
im:7154516	im:7154516	0.016
pigu	phosphatidylinositol glycan anchor biosynthesis, class U	0.016
cald1	caldesmon 1	0.016
nfatc4	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4	0.016
unc45a	unc-45 homolog A (C. elegans)	0.016
rplp1	ribosomal protein, large, P1	0.016
igfbp5a	insulin-like growth factor binding protein 5a	0.016
glrbb	glycine receptor, beta b	0.015
bnc2	basonuclin 2	0.015
tagln	transgelin	0.015
actn4	actinin, alpha 4	0.015
angpt1	angiopoietin 1	0.015
gja3	gap junction protein, alpha 3	0.015
aspn	asporin (LRR class 1)	0.015	Zebrafish
tpm4	tropomyosin 4	0.015
mxra8a	matrix-remodelling associated 8a	0.015
nkx3-1	NK3 homeobox 1	0.015
guca1c	guanylate cyclase activator 1C	0.015
im:6911434	im:6911434	0.015
pitx3	paired-like homeodomain transcription factor 3	0.014
ltk	leukocyte tyrosine kinase	0.014
smyd3	SET and MYND domain containing 3	0.014
cldn15la	claudin 15-like a	0.014
slc34a2a	solute carrier family 34 (sodium phosphate), member 2a	0.014
zgc:101810	zgc:101810	0.014
ltbp3	latent transforming growth factor beta binding protein 3	0.014
myoc	myocilin	0.014
camk1d	calcium/calmodulin-dependent protein kinase 1D	0.014
rps11	ribosomal protein S11	0.014
tln1	talin 1	0.014
vil1l	villin 1 like	0.014
dkk3	dickkopf homolog 3 (Xenopus laevis)	0.013
ckba	creatine kinase, brain a	0.013
col27a1b	collagen, type XXVII, alpha 1b	0.013
kdr	kinase insert domain receptor (a type III receptor tyrosine kinase)	0.013
loxl2a	lysyl oxidase-like 2a	0.013
and1	actinodin1	0.013
col2a1a	collagen type II, alpha-1a	0.013	Human Mouse
plekhg5a	pleckstrin homology domain containing, family G (with RhoGef domain) member 5a	0.013
ela2l	elastase 2 like	0.013
zgc:114095	zgc:114095	0.013
tlr21	toll-like receptor 21	0.013
arhgef25b	Rho guanine nucleotide exchange factor (GEF) 25b	0.013
col11a2	collagen type XI alpha-2	0.013	Mouse
col6a1	collagen, type VI, alpha 1	0.013
efemp2	EGF-containing fibulin-like extracellular matrix protein 2	0.013
plp1b	proteolipid protein 1b	0.013
ecm2	extracellular matrix protein 2, female organ and adipocyte specific	0.013
si:dkey-25o1.2	si:dkey-25o1.2	0.013
LOC565106	novel protein similar to vertebrate calpain 1 (CAPN1)	0.013
epha2	eph receptor A2	0.013
inhbaa	inhibin, beta Aa	0.013
npffl	neuropeptide FF-amide peptide precursor like	0.012
mogat2	monoacylglycerol O-acyltransferase 2	0.012
hist1h4l	histone 1, H4, like	0.012
tfpi2	tissue factor pathway inhibitor 2	0.012
lect1	leukocyte cell derived chemotaxin 1	0.012
si:ch1073-459j12.1	si:ch1073-459j12.1	0.012
zgc:66484	zgc:66484	0.012
mcamb	melanoma cell adhesion molecule b	0.012
col19a1	collagen, type XIX, alpha 1	0.012
zgc:56622	zgc:56622	0.012
LOC100332039	ectonucleotide pyrophosphatase/phosphodiesterase family member 2-like	0.012
cyp3a65	cytochrome P450, family 3, subfamily A, polypeptide 65	0.012
per2	period homolog 2 (Drosophila)	0.012
wars	tryptophanyl-tRNA synthetase	0.012
cx32.3	connexin 32.3	0.012
pcolce2b	procollagen C-endopeptidase enhancer 2b	0.012
LOC568379	von Willebrand factor A domain-containing protein 1-like	0.012
mylka	myosin, light chain kinase a	0.012
extl3	exostoses (multiple)-like 3	0.012
brd2b	bromodomain containing 2b	0.012
cel.1	carboxyl ester lipase, tandem duplicate 1	0.012
wif1	wnt inhibitory factor 1	0.012
dusp2	dual specificity phosphatase 2	0.012
zbtb4	zinc finger and BTB domain containing 4	0.012
bmp3	bone morphogenetic protein 3	0.012
tnw	tenascin W	0.011
rpz5	rapunzel 5	0.011
cdk10	cyclin-dependent kinase 10	0.011
skiv2l2	superkiller viralicidic activity 2-like 2	0.011
junb	jun B proto-oncogene	0.011
zgc:198195	zgc:198195	0.011
ms4a17a.11	membrane-spanning 4-domains, subfamily A, member 17A.11	0.011
cyp3c1l2	cytochrome P450, family 3, subfamily c, polypeptide 1 like, 2	0.011
ogt.1	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 1	0.011
LOC556849	ectonucleoside triphosphate diphosphohydrolase 5-like	0.011
cldn15lb	claudin 15-like b	0.011
si:dkey-19p15.7	si:dkey-19p15.7	0.011
LOC100003911	chemokine CXCL-C13d	0.011
cacna1ab	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b	0.011
hmgcrb	3-hydroxy-3-methylglutaryl-Coenzyme A reductase b	0.011
glra1	glycine receptor, alpha 1	0.011
gb:bm036580	gb:bm036580	0.011
lama2	laminin, alpha 2	0.011
si:dkey-151c10.1	si:dkey-151c10.1	0.011
fmnl2a	formin-like 2a	0.011
col6a6	collagen, type VI, alpha 6	0.011
pthlh	parathyroid hormone-like hormone	0.011
ptprb	protein tyrosine phosphatase, receptor type, b	0.011
hgd	homogentisate 1,2-dioxygenase	0.010
cdh5	cadherin 5	0.010
adora2b	adenosine A2b receptor	0.010
pcsk5b	proprotein convertase subtilisin/kexin type 5b	0.010
ednra	endothelin receptor type A	0.010
zgc:113456	zgc:113456	0.010	Zebrafish
rnd3b	Rho family GTPase 3b	0.010
becn1	beclin 1 (coiled-coil, myosin-like BCL2 interacting protein)	0.010
tie2	endothelium-specific receptor tyrosine kinase 2	0.010
zgc:56116	zgc:56116	0.010
fbxw7	F-box and WD repeat domain containing 7	0.010
hbl3	hexose-binding lectin 3	0.010
nrp2a	neuropilin 2a	0.010
ptprja	protein tyrosine phosphatase, receptor type, J a	0.010
mxd3	MAX dimerization protein 3	0.010
flrt3	fibronectin leucine rich transmembrane 3	0.010
bambib	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) b	0.010
irf11	interferon regulatory factor 11	0.010
LOC100333708	papilin-like	0.010
sec24d	SEC24 family, member D (S. cerevisiae)	0.010
ch1073-291c23.1	ch1073-291c23.1	0.010
ocrl	oculocerebrorenal syndrome of Lowe	0.010
itk	IL2-inducible T-cell kinase	0.010
nop10	NOP10 ribonucleoprotein homolog (yeast)	0.010
sb:cb1035	sb:cb1035	0.010