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Process View

Danio rerio

12 genes annotated in zebrafish

detection of visible light

The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.

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In addition to gene-name show these genes:

Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "detection of visible light"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "detection of visible light" (in gray)

Name	Description	Probability	Func Analog Organism
rho	rhodopsin	0.894
opn1sw2	opsin 1 (cone pigments), short-wave-sensitive 2	0.873	Zebrafish
opn1lw1	opsin 1 (cone pigments), long-wave-sensitive, 1	0.771	Zebrafish
guca1c	guanylate cyclase activator 1C	0.739
gc3	guanylyl cyclase 3	0.662
gnat2	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2	0.640
ift88	intraflagellar transport 88 homolog	0.560
opn1sw1	opsin 1 (cone pigments), short-wave-sensitive 1	0.501	Zebrafish
gna13a	guanine nucleotide binding protein (G protein), alpha 13a	0.423
gnat1	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1	0.392	Zebrafish Mouse
opn1mw1	opsin 1 (cone pigments), medium-wave-sensitive, 1	0.372	Zebrafish
arr3a	arrestin 3a, retinal (X-arrestin)	0.323	Fly
aanat2	arylalkylamine N-acetyltransferase	0.321
opn4l	opsin 4, like	0.299
scn1ba	sodium channel, voltage-gated, type I, beta a	0.296
cadm2b	cell adhesion molecule 2b	0.237
grk7a	G-protein-coupled receptor kinase 7a	0.213
crb3a	crumbs homolog 3a	0.196
crb3b	crumbs homolog 3b	0.178
crb2b	crumbs homolog 2b	0.178
LOC100331502	melanopsin-B-like	0.174
irbp	interphotoreceptor retinoid-binding protein	0.171
opn4a	opsin 4a (melanopsin)	0.151	Human Zebrafish Mouse Rat Fly
gnaz	guanine nucleotide binding protein (G protein), alpha z polypeptide	0.149
rdh5	retinol dehydrogenase 5 (11-cis/9-cis)	0.143
cacna1da	calcium channel, voltage-dependent, L type, alpha 1D subunit, a	0.135
chat	choline acetyltransferase	0.133
gna11	guanine nucleotide binding protein (G protein), alpha 11 (Gq class)	0.129
zgc:56548	zgc:56548	0.118
lamc3	laminin, gamma 3	0.098
zgc:73155	zgc:73155	0.095
trpc5	transient receptor potential cation channel, subfamily C, member 5	0.089
opn4x1	opsin 4x1	0.089	Zebrafish Fly
gnai2	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2	0.088	Zebrafish
gucy2f	guanylate cyclase 2F, retinal	0.087
pde6c	phosphodiesterase 6C, cGMP-specific, cone, alpha prime	0.085
pafah1b1b	platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit b	0.084
s100a10a	S100 calcium binding protein A10a	0.081
cacnb4a	calcium channel, voltage-dependent, beta 4a subunit	0.081	Mouse
mpp5b	membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5b)	0.073
crb2a	crumbs homolog 2a	0.073
crx	cone-rod homeobox	0.065
guca1d	guanylate cyclase activator 1d	0.059
gnas	GNAS complex locus	0.059
zgc:162213	zgc:162213	0.057
gna14	guanine nucleotide binding protein (G protein), alpha 14	0.056	Zebrafish
valopb	vertebrate ancient long opsin b	0.052	Zebrafish
lama1	laminin, alpha 1	0.051	Zebrafish
gnal	guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	0.051
icn	ictacalcin	0.050
rpe65a	retinal pigment epithelium-specific protein 65a	0.049	Fly
crb1	crumbs homolog 1 (Drosophila)	0.047
cyfip2	cytoplasmic FMR1 interacting protein 2	0.045
arr3b	arrestin 3b, retinal (X-arrestin)	0.045
elnb	elastin b	0.045
gfi1.2	growth factor independent 1.2	0.044
si:ch211-173b8.2	si:ch211-173b8.2	0.044
cplx4a	complexin 4a	0.042
cacnb2a	calcium channel, voltage-dependent, beta 2a	0.042
s100z	S100 calcium binding protein Z	0.041
LOC100332929	guanine nucleotide-binding protein subunit alpha-15-like	0.040
cap2	CAP, adenylate cyclase-associated protein, 2 (yeast)	0.039
pde6h	phosphodiesterase 6H, cGMP-specific, cone, gamma	0.039
vamp2	vesicle-associated membrane protein 2	0.039
als2cr4a	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4a	0.039
rbp4l	retinol binding protein 4, like	0.039
clrn1	clarin 1	0.037
nyx	nyctalopin	0.037
vangl2	vang-like 2 (van gogh, Drosophila)	0.036
gna12	guanine nucleotide binding protein (G protein) alpha 12	0.036	Zebrafish
LOC799612	prolactin 2	0.035
zgc:73359	zgc:73359	0.035
sagb	S-antigen; retina and pineal gland (arrestin) b	0.034	Fly
zgc:92392	zgc:92392	0.033
grk1b	G protein-coupled receptor kinase 1 b	0.032	Zebrafish
hapln3	hyaluronan and proteoglycan link protein 3	0.031
zgc:100942	zgc:100942	0.031	Zebrafish
copa	coatomer protein complex, subunit alpha	0.030
cdh2	cadherin 2, neuronal	0.030
gnai3	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3	0.030
tsc22d3	TSC22 domain family, member 3	0.030
zgc:77752	zgc:77752	0.029
gngt1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	0.028
cacnb2b	calcium channel, voltage-dependent, beta 2b	0.028
opn3	opsin 3 (encephalopsin, panopsin)	0.027	Zebrafish
nptx2b	neuronal pentraxin 2b	0.026
clock	clock	0.026
ache	acetylcholinesterase	0.025
cx52.6	connexin 52.6	0.025
gnai1	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1	0.025
lin7a	lin-7 homolog A (C. elegans)	0.024
LOC568691	opsin-3-like	0.024
rtn4r	reticulon 4 receptor	0.023
scn1lab	sodium channel, voltage-gated, type I like, alpha b	0.022
gnav1	guanine nucleotide binding protein (G protein) alpha v1	0.021	Zebrafish
celsr3	cadherin, EGF LAG seven-pass G-type receptor 3	0.021
LOC799274	kinesin heavy chain isoform 5A-like	0.021
gnai2l	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2, like	0.020	Zebrafish
frem3	Fras1 related extracellular matrix 3	0.020
si:ch211-207c7.1	si:ch211-207c7.1	0.020
cadps2	Ca2+-dependent activator protein for secretion 2	0.019
pdca	phosducin a	0.019
ttc39c	tetratricopeptide repeat domain 39C	0.019
gnrhr3	gonadotropin releasing hormone receptor 3	0.018
tmx3	thioredoxin-related transmembrane protein 3	0.018
cyp1d1	cytochrome P450, family 1, subfamily D, polypeptide 1	0.018
pdzd7a	PDZ domain containing 7a	0.018
gnrh3	gonadotropin-releasing hormone 3	0.018
cep290	centrosomal protein 290	0.018
arl3l2	ADP-ribosylation factor-like 3, like 2	0.017
rx1	retinal homeobox gene 1	0.017
lamb4	laminin, beta 4	0.017	Zebrafish
gnao1b	guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b	0.016	Zebrafish
zgc:77060	zgc:77060	0.016
kif17	kinesin family member 17	0.015
arnt2	aryl hydrocarbon receptor nuclear translocator 2	0.015
LOC794630	retinol-binding protein 3-like	0.015
rgs8	regulator of G-protein signaling 8	0.014
rcv1	recoverin	0.014
fscn2	fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	0.014
lama2	laminin, alpha 2	0.014
fabp11b	fatty acid binding protein 11b	0.014
ntrk3b	neurotrophic tyrosine kinase, receptor, type 3b	0.014
th2	tyrosine hydroxylase 2	0.014
zgc:73230	zgc:73230	0.014
gnaq	guanine nucleotide binding protein (G protein), q polypeptide	0.014
kera	keratocan	0.014
cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	0.014
cdh23	cadherin-like 23	0.014
scn4aa	sodium channel, voltage-gated, type IV, alpha, a	0.014
nfe2l1	nuclear factor, erythroid derived 2,-like 1	0.014
slc2a9l2	solute carrier family 2 (facilitated glucose transporter), member 9-like 2	0.013
pitpnb	phosphotidylinositol transfer protein, beta	0.013
grk1a	G protein-coupled receptor kinase 1 a	0.013	Human Zebrafish
spon1a	spondin 1a	0.013
es1	es1 protein	0.013
gc2	guanylyl cyclase 2	0.013
otx5	orthodenticle homolog 5	0.013
zgc:101761	zgc:101761	0.013
ptprn2l	protein tyrosine phosphatase, receptor type, N polypeptide 2, like	0.013
macc1	metastasis associated in colon cancer 1	0.012
rs1	retinoschisis (X-linked, juvenile) 1	0.012	Mouse
unc119.1	unc-119 homolog 1	0.012
ntrk2a	neurotrophic tyrosine kinase, receptor, type 2a	0.012
csgalnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	0.012
rdh12	retinol dehydrogenase 12 (all-trans and 9-cis)	0.012	Mouse
adcyap1a	adenylate cyclase activating polypeptide 1a	0.012
nr1d2a	nuclear receptor subfamily 1, group D, member 2a	0.012
lpar1	lysophosphatidic acid receptor 1	0.012
dpf3	D4, zinc and double PHD fingers, family 3	0.011
gnb3b	guanine nucleotide binding protein (G protein), beta polypeptide 3b	0.011
gnrhr4	gonadotropin releasing hormone receptor 4	0.011
rcn1	reticulocalbin 1, EF-hand calcium binding domain	0.011
plxnb2a	plexin b2a	0.011
npc1	Niemann-Pick disease, type C1	0.011
zgc:163091	zgc:163091	0.011
pdzd7b	PDZ domain containing 7b	0.011
notum3	notum 3	0.011
slc25a3a	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3a	0.011
si:ch211-45m15.1	si:ch211-45m15.1	0.011
s100t	S100 calcium binding protein T	0.011
slc17a8	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	0.011
wu:fc67d01	wu:fc67d01	0.011
calua	calumenin a	0.010
rab11bb	RAB11B, member RAS oncogene family, b	0.010
gpr161	G protein-coupled receptor 161	0.010
LOC569768	metabotropic glutamate receptor 8-like	0.010
zgc:112018	zgc:112018	0.010
prkca	protein kinase C, alpha	0.010