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Danio rerio

9 genes annotated in zebrafish

regulation of sequence specific dna binding transcription factor activity

Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "regulation of sequence specific dna binding transcription factor activity"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "regulation of sequence specific dna binding transcription factor activity" (in gray)

Name	Description	Probability	Func Analog Organism
shha	sonic hedgehog a	0.972	Mouse Fly
sox3	SRY-box containing gene 3	0.692
gata6	GATA-binding protein 6	0.690
sox9b	SRY-box containing gene 9b	0.618	Zebrafish
chd	chordin	0.311
tp53	tumor protein p53	0.279
wnt4a	wingless-type MMTV integration site family, member 4a	0.217
foxa2	forkhead box A2	0.202	Human
LOC557072	caspase recruitment domain-containing protein 11-like	0.188
arl4ab	ADP-ribosylation factor-like 4ab	0.183
tph2	tryptophan hydroxylase 2 (tryptophan 5-monooxygenase)	0.177
fsta	follistatin a	0.169
sox2	SRY-box containing gene 2	0.169
tbx1	T-box 1	0.168
ptch2	patched 2	0.145
fgf8a	fibroblast growth factor 8 a	0.143
dlx3b	distal-less homeobox gene 3b	0.136
neo1	neogenin 1	0.134
tlr3	toll-like receptor 3	0.128	Mouse
rarga	retinoic acid receptor gamma a	0.123
foxa3	forkhead box A3	0.110
sox9a	SRY-box containing gene 9a	0.108	Zebrafish
vasa	vasa homolog	0.099
tfap2a	transcription factor AP-2 alpha	0.097
ca2	carbonic anhydrase II	0.092
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.090	Human
ets1a	v-ets erythroblastosis virus E26 oncogene homolog 1a	0.089
lft1	lefty1	0.088
fn1	fibronectin 1	0.085
stc1l	stanniocalcin 1, like	0.084
spi1l	spleen focus forming virus (SFFV) proviral integration oncogene spi1 like	0.080
fancl	Fanconi anemia, complementation group L	0.073
nkx2.2a	NK2 transcription factor related 2a	0.073	Mouse
csf3r	colony stimulating factor 3 receptor (granulocyte)	0.072
runx1	runt-related transcription factor 1	0.071
kdrl	kinase insert domain receptor like	0.066
si:ch211-235f6.2	si:ch211-235f6.2	0.060
lmo2	LIM domain only 2 (rhombotin-like 1)	0.059
zic3	zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila)	0.059
sox11a	SRY-box containing gene 11a	0.059
alcama	activated leukocyte cell adhesion molecule a	0.058
gata4	GATA-binding protein 4	0.058
lass2	LAG1 homolog, ceramide synthase 2 (S. cerevisiae)	0.056
mib	mind bomb	0.055
gata5	GATA-binding protein 5	0.055
kiss1rb	KISS1 receptor b	0.055
nod1	nucleotide-binding oligomerization domain containing 1	0.053
fabp2	fatty acid binding protein 2, intestinal	0.053
rgs4	regulator of G-protein signalling 4	0.052
hhex	hematopoietically expressed homeobox	0.052
wnt3	wingless-type MMTV integration site family, member 3	0.049
flh	floating head	0.043
ar	androgen receptor	0.042
cpox	coproporphyrinogen oxidase	0.042
sox7	SRY-box containing gene 7	0.040	Zebrafish
etv2	ets variant gene 2	0.040
lgi1b	leucine-rich, glioma inactivated 1b	0.040
fzd5	frizzled homolog 5	0.039
rag1	recombination activating gene 1	0.039
erg	v-ets erythroblastosis virus E26 oncogene like (avian)	0.038
btk	Bruton agammaglobulinemia tyrosine kinase	0.036
hnf1ba	HNF1 homeobox Ba	0.036
defbl1	defensin, beta-like 1	0.036
LOC100151531	zinc finger protein Gfi-1b-like	0.035
twist1b	twist1b	0.035
wnt1	wingless-type MMTV integration site family, member 1	0.035	Mouse
sod2	superoxide dismutase 2, mitochondrial	0.033
nr3c1	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.033
igf2a	insulin-like growth factor 2a	0.032
igf1ra	insulin-like growth factor 1a receptor	0.032	Mouse
sfrp1a	secreted frizzled-related protein 1a	0.032
ins	preproinsulin	0.031
dlc	deltaC	0.031
elk4	ELK4, ETS-domain protein	0.031
grifin	galectin related inter-fiber protein	0.030
trpm7	transient receptor potential cation channel, subfamily M, member 7	0.030
meis1	myeloid ecotropic viral integration 1	0.029
itm2bb	integral membrane protein 2Bb	0.028
boc	brother of CDO	0.028
csnk1da	casein kinase 1, delta a	0.028
axin2	axin 2 (conductin, axil)	0.028
wif1	wnt inhibitory factor 1	0.028
LOC100000687	signal peptide, CUB and EGF-like domain-containing protein 3-like	0.028
mbnl2	muscleblind-like 2 (Drosophila)	0.028
ip6k2	inositol hexaphosphate kinase 2	0.027
ntrk3b	neurotrophic tyrosine kinase, receptor, type 3b	0.027
ripk2	receptor-interacting serine-threonine kinase 2	0.027
sox4b	SRY-box containing gene 4b	0.027
tbpl2	TATA box binding protein like 2	0.027
mdkb	midkine-related growth factor b	0.026
thrab	thyroid hormone receptor alpha b	0.026	Rat
tlr18	toll-like receptor 18	0.026
gli1	GLI-Kruppel family member 1	0.026
fev	FEV (ETS oncogene family)	0.026
figla	factor in the germline alpha	0.025
psmc6	proteasome (prosome, macropain) 26S subunit, ATPase, 6	0.025
gfer	growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae)	0.025
pitx2	paired-like homeodomain transcription factor 2	0.025
drl	draculin	0.025
itga2b	integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)	0.024
gdf6a	growth differentiation factor 6a	0.024
igf2b	insulin-like growth factor 2b	0.024
uqcrc2b	ubiquinol-cytochrome c reductase core protein IIb	0.024
zgc:195154	zgc:195154	0.024
rel	v-rel reticuloendotheliosis viral oncogene homolog	0.024
irx3a	iroquois homeobox protein 3a	0.023
ptch1	patched 1	0.023
epor	erythropoietin receptor	0.022
dvl3	dishevelled, dsh homolog 3 (Drosophila)	0.022
tjp1	tight junction protein 1 (zona occludens 1)	0.022
ccnd1	cyclin D1	0.022
lfng	lunatic fringe homolog	0.022
pax7a	paired box gene 7a	0.021
zgc:112056	zgc:112056	0.021
mipa	major intrinsic protein of lens fiber a	0.021
fgf3	fibroblast growth factor 3	0.021
tmem88a	transmembrane protein 88 a	0.020
foxd3	forkhead box D3	0.020
pkz	protein kinase containing Z-DNA binding domains	0.020	Human
rtn4rl1	reticulon 4 receptor-like 1	0.019
wnt2bb	wingless-type MMTV integration site family, member 2Bb	0.019
crip2	cysteine-rich protein 2	0.019
tnfa	tumor necrosis factor a (TNF superfamily, member 2)	0.019
plaua	plasminogen activator, urokinase a	0.018
spata2	spermatogenesis associated 2	0.018
zgc:64114	zgc:64114	0.018
dla	deltaA	0.018
zgc:55307	zgc:55307	0.018
prox1	prospero-related homeobox gene 1	0.018
slc25a37	solute carrier family 25, member 37	0.017
rtn1a	reticulon 1a	0.017
msxb	muscle segment homeobox B	0.017
rarab	retinoic acid receptor, alpha b	0.017
jag2	jagged 2	0.016
osr2	odd-skipped related 2 (Drosophila)	0.016
psmd6	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	0.016
fabp11a	fatty acid binding protein 11a	0.016
esr1	estrogen receptor 1	0.016	Human
pax2a	paired box gene 2a	0.016
plagl2	pleiomorphic adenoma gene-like 2	0.016
psmc2	proteasome (prosome, macropain) 26S subunit, ATPase 2	0.016
zp3	zona pellucida glycoprotein 3	0.016
foxi3a	forkhead box I3a	0.016
neurod4	neurogenic differentiation 4	0.016
cyp19a1a	cytochrome P450, family 19, subfamily A, polypeptide 1a	0.015
mapk1	mitogen-activated protein kinase 1	0.015	Yeast
atp2b4	ATPase, Ca++ transporting, plasma membrane 4	0.015
osr1	odd-skipped related 1 (Drosophila)	0.015
ambra1	autophagy/beclin-1 regulator 1	0.015
sox5	SRY-box containing gene 5	0.015
mafba	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	0.015
LOC100003514	protein kinase C alpha type-like	0.015
mapk3	mitogen-activated protein kinase 3	0.015	Yeast Mouse
zfpm2b	zinc finger protein, multitype 2b	0.015	Fly
ppia	peptidylprolyl isomerase A (cyclophilin A)	0.014
hoxb5a	homeo box B5a	0.014
metap2	methionyl aminopeptidase 2	0.014
il8	interleukin 8	0.014
tm4sf4	transmembrane 4 L six family member 4	0.014
smarca2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	0.014
coro2a	coronin, actin binding protein, 2A	0.013
fzd8a	frizzled homolog 8a	0.013
runx2b	runt-related transcription factor 2b	0.013
id2a	inhibitor of DNA binding 2, dominant negative helix-loop-helix protein, a	0.013	Human
ntrk2a	neurotrophic tyrosine kinase, receptor, type 2a	0.013
zgc:161979	zgc:161979	0.013
neurog1	neurogenin 1	0.013	Mouse
nr5a1b	nuclear receptor subfamily 5, group A, member 1b	0.013
her6	hairy-related 6	0.013
waca	WW domain containing adaptor with coiled-coil a	0.013
cebpa	CCAAT/enhancer binding protein (C/EBP), alpha	0.013
ddc	dopa decarboxylase	0.012
st8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	0.012
flt4	fms-related tyrosine kinase 4	0.012
znf148	zinc finger protein 148	0.012
zgc:66100	zgc:66100	0.012
csf1ra	colony stimulating factor 1 receptor, a	0.012
rnf2	ring finger protein 2	0.012
hdr	hematopoietic death receptor	0.012
skia	nuclear oncoprotein skia	0.012
unc5db	unc-5 homolog Db (C. elegans)	0.012
alk	anaplastic lymphoma kinase (Ki-1)	0.012
alas2	aminolevulinate, delta-, synthetase 2	0.012
dab2	disabled homolog 2 (Drosophila)	0.012
cdh17	cadherin 17, LI cadherin (liver-intestine)	0.012
acvr1l	activin A receptor, type I like	0.011
ncor1	nuclear receptor co-repressor 1	0.011
ythdf1	YTH domain family, member 1	0.011
LOC560602	novel protein similar to vertebrate solute carrier family 2 (facilitated glucose transporter), member 6 (SLC2A6)	0.011
meis3	myeloid ecotropic viral integration site 3	0.011
dab1a	disabled homolog 1a (Drosophila)	0.011
cops3	COP9 constitutive photomorphogenic homolog subunit 3	0.011
trpv6	transient receptor potential cation channel, subfamily V, member 6	0.011
hand2	heart and neural crest derivatives expressed transcript 2	0.011	Mouse
il6r	interleukin 6 receptor	0.011
myca	myelocytomatosis oncogene a	0.011
slc2a1b	solute carrier family 2 (facilitated glucose transporter), member 1b	0.011
hlxb9la	homeo box HB9 like a	0.011
sumo3a	SMT3 suppressor of mif two 3 homolog 3a	0.011
nos2a	nitric oxide synthase 2a, inducible	0.011
dmrt3a	doublesex and mab-3 related transcription factor 3a	0.011
nadka	NAD kinase a	0.011
large	like-glycosyltransferase	0.011
rfng	radical fringe homolog (Drosophila)	0.010
igf1rb	insulin-like growth factor 1b receptor	0.010	Mouse
sfrp5	secreted frizzled-related protein 5	0.010
gadd45ba	growth arrest and DNA-damage-inducible, beta a	0.010
tbp	TATA box binding protein	0.010
hsd17b12b	hydroxysteroid (17-beta) dehydrogenase 12b	0.010
nkx2.1a	NK2 homeobox 1a	0.010
ahcy	S-adenosylhomocysteine hydrolase	0.010
si:ch211-173o4.2	si:ch211-173o4.2	0.010
her8a	hairy-related 8a	0.010
vps39	vacuolar protein sorting 39 homolog (S. cerevisiae)	0.010