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Danio rerio

1 genes annotated in zebrafish

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dorsal ventral neural tube patterning

GO:0021904

The process in which the neural tube is regionalized in the dorsoventral axis.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "dorsal ventral neural tube patterning"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "dorsal ventral neural tube patterning" (in gray)

Name	Description	Probability	Func Analog Organism
shha	sonic hedgehog a	0.998	Mouse
ptch2	patched 2	0.988
fgf8a	fibroblast growth factor 8 a	0.959
bmp2b	bone morphogenetic protein 2b	0.838
foxa3	forkhead box A3	0.772
sox9a	SRY-box containing gene 9a	0.710
prdm1a	PR domain containing 1a, with ZNF domain	0.694
cdh2	cadherin 2, neuronal	0.641
foxa2	forkhead box A2	0.519	Mouse
gli1	GLI-Kruppel family member 1	0.428
foxi1	forkhead box I1	0.378
chd	chordin	0.355
tp53	tumor protein p53	0.351
aldh1a2	aldehyde dehydrogenase 1 family, member A2	0.345
tbx1	T-box 1	0.335
sox9b	SRY-box containing gene 9b	0.327
ntla	no tail a	0.312
gdf6a	growth differentiation factor 6a	0.290
hoxb1a	homeo box B1a	0.237
pax2a	paired box gene 2a	0.202
col2a1a	collagen type II, alpha-1a	0.197
hhip	hedgehog interacting protein	0.196
dld	deltaD	0.196
smad5	MAD homolog 5 (Drosophila)	0.192
lef1	lymphocyte enhancer binding factor 1	0.182
hnf1ba	HNF1 homeobox Ba	0.167
wnt5b	wingless-type MMTV integration site family, member 5b	0.147
sox10	SRY-box containing gene 10	0.146
nkx2.2a	NK2 transcription factor related 2a	0.145
twist1a	twist1a	0.136
hgfb	hepatocyte growth factor b	0.134
dlx2a	distal-less homeobox gene 2a	0.121
fn1	fibronectin 1	0.115
foxd3	forkhead box D3	0.100
cdx4	caudal type homeo box transcription factor 4	0.098
gata6	GATA-binding protein 6	0.082
snai1a	snail homolog 1a (Drosophila)	0.072
tbx2b	T-box 2b	0.071
wif1	wnt inhibitory factor 1	0.069
dbx1a	developing brain homeobox 1a	0.068
ext2	exostoses (multiple) 2	0.068
gsc	goosecoid	0.065	Mouse
ihha	Indian hedgehog homolog a	0.064
wnt9a	wingless-type MMTV integration site family, member 9A	0.064
mapk14a	mitogen-activated protein kinase 14a	0.063
lama5	laminin, alpha 5	0.061
hand2	heart and neural crest derivatives expressed transcript 2	0.060
fgf3	fibroblast growth factor 3	0.055
flh	floating head	0.055
wls	wntless homolog (Drosophila)	0.053
pcdh18b	protocadherin 18b	0.051
hgfa	hepatocyte growth factor a	0.050
cyp26c1	cytochrome P450, family 26, subfamily C, polypeptide 1	0.049
wnt4a	wingless-type MMTV integration site family, member 4a	0.049
pitx2	paired-like homeodomain transcription factor 2	0.048
LOC100000687	signal peptide, CUB and EGF-like domain-containing protein 3-like	0.048
cdh1	cadherin 1, epithelial	0.047
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.043
cyp26a1	cytochrome P450, subfamily XXVIA, polypeptide 1	0.042
sfrp5	secreted frizzled-related protein 5	0.040
bmpr1aa	bone morphogenetic protein receptor, type 1aa	0.039
nog1	noggin 1	0.038
shhb	sonic hedgehog b	0.037	Mouse
myod1	myogenic differentiation 1	0.036
dag1	dystroglycan 1	0.036
col11a2	collagen type XI alpha-2	0.034
gpc4	glypican 4	0.033
foxa1	forkhead box A1	0.031	Mouse
nkd1	naked cuticle homolog 1 (Drosophila)	0.028
myf5	myogenic factor 5	0.027
met	met proto-oncogene (hepatocyte growth factor receptor)	0.027
npc1	Niemann-Pick disease, type C1	0.026
wnt11	wingless-type MMTV integration site family, member 11	0.026
lamb1a	laminin, beta 1a	0.026
axin1	axin 1	0.025
lamc1	laminin, gamma 1	0.025
osr1	odd-skipped related 1 (Drosophila)	0.025
neo1	neogenin 1	0.024
cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1	0.024
edn1	endothelin 1	0.023
boc	brother of CDO	0.023
ryk	receptor-like tyrosine kinase	0.023
egr2b	early growth response 2b	0.022
LOC797832	similar to signal peptide, CUB domain, EGF-like 1	0.022
mib	mind bomb	0.021
jag1b	jagged 1b	0.021
brd2a	bromodomain-containing 2a	0.021
epha4a	eph receptor A4a	0.021
sulf1	sulfatase 1	0.021
raraa	retinoic acid receptor, alpha a	0.020
trpm7	transient receptor potential cation channel, subfamily M, member 7	0.020
sox2	SRY-box containing gene 2	0.020
dla	deltaA	0.020
gli2a	GLI-Kruppel family member GLI2a	0.020	Mouse
nr3c1	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.020
rnasel1	ribonuclease like 1	0.020
jag2	jagged 2	0.019
msxc	muscle segment homeobox C	0.019
nkx6.2	NK6 transcription factor related, locus 2	0.019
ptch1	patched 1	0.019	Mouse
hspb1	heat shock protein, alpha-crystallin-related, 1	0.018
frzb	frizzled-related protein	0.018
bmp1a	bone morphogenetic protein 1a	0.018
hoxa4a	homeo box A4a	0.018
dlx5a	distal-less homeobox gene 5a	0.018
ube2l3a	ubiquitin-conjugating enzyme E2L 3a	0.017
col8a1a	collagen, type VIII, alpha 1a	0.017
satb2	SATB homeobox 2	0.017
ins	preproinsulin	0.017
ef1a	elongation factor 1-alpha	0.017
nkx2.9	NK2 transcription factor related, locus 9 (Drosophila)	0.017
ppp1cbl	protein phosphatase 1, catalytic subunit, beta isoform, like	0.017
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.017
rarab	retinoic acid receptor, alpha b	0.016
fzd7b	frizzled homolog 7b	0.016
acvr2a	activin receptor IIa	0.016
apoc2	apolipoprotein C-II	0.016
sec13	SEC13 homolog (S. cerevisiae)	0.016
nkx6.1	NK6 transcription factor related, locus 1 (Drosophila)	0.015
pdcd10a	programmed cell death 10a	0.015
szl	sizzled	0.015
cxcl12b	chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1)	0.015
sema3d	semaphorin 3d	0.015
zfand5a	zinc finger, AN1-type domain 5a	0.014
oep	one-eyed pinhead	0.014
spsb4a	splA/ryanodine receptor domain and SOCS box containing 4a	0.014
ptpra	protein tyrosine phosphatase, receptor type, A	0.014
apoa1	apolipoprotein A-I	0.014
bactin2	bactin2	0.014
rac1	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	0.014
zgc:92014	zgc:92014	0.014
barx2	BarH-like homeobox 2	0.013
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.013
limk2	LIM domain kinase 2	0.013
aph1b	anterior pharynx defective 1B	0.013
osr2	odd-skipped related 2 (Drosophila)	0.013
tcf7l1b	transcription factor 7-like 1b (T-cell specific, HMG-box)	0.013
ltk	leukocyte tyrosine kinase	0.013
yes1	v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1	0.013
slc35b2	solute carrier family 35, member B2	0.013
LOC554173	abnormal spindles	0.013
ndr2	nodal-related 2	0.013
dab1a	disabled homolog 1a (Drosophila)	0.013
sec23ip	SEC23 interacting protein	0.013
lonp2	lon peptidase 2, peroxisomal	0.013
col5a3b	collagen type V alpha-3b	0.012
efnb2a	ephrin B2a	0.012
mych	myelocytomatosis oncogene homolog	0.012
chst11	carbohydrate (chondroitin 4) sulfotransferase 11	0.012
wnt3a	wingless-type MMTV integration site family, member 3A	0.012	Mouse
hlxb9lb	homeo box HB9 like b	0.012
mitfa	microphthalmia-associated transcription factor a	0.012
fam20b	family with sequence similarity 20, member B (H. sapiens)	0.012
cdc26	cell division cycle 26 homolog	0.012
dbt	dihydrolipoamide branched chain transacylase E2	0.012
kita	kit receptor a	0.011
hapln1a	hyaluronan and proteoglycan link protein 1a	0.011
wu:fk36e11	wu:fk36e11	0.011
igf2a	insulin-like growth factor 2a	0.011
dzip1	DAZ interacting protein 1	0.011
zgc:158603	zgc:158603	0.011
ints6	integrator complex subunit 6	0.011
spry2	sprouty homolog 2	0.011
tfec	transcription factor EC	0.011
gro1	groucho 1	0.011
gatm	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	0.011
acvr1l	activin A receptor, type I like	0.011
vasa	vasa homolog	0.011
hs6st1b	heparan sulfate 6-O-sulfotransferase 1b	0.011
pdx1	pancreatic and duodenal homeobox 1	0.011
hlxb9la	homeo box HB9 like a	0.011
kctd12.1	potassium channel tetramerisation domain containing 12.1	0.011
psenen	presenilin enhancer 2 homolog	0.011
ces2	carboxylesterase 2 (intestine, liver)	0.011
hhex	hematopoietically expressed homeobox	0.011
nudt2	nudix (nucleoside diphosphate linked moiety X)-type motif 2	0.011
arhgdia	Rho GDP dissociation inhibitor (GDI) alpha	0.011
otud5a	OTU domain containing 5a	0.011
crestin	crestin	0.010
grina	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	0.010
gro2	groucho 2	0.010
papss2b	3'-phosphoadenosine 5'-phosphosulfate synthase 2b	0.010
aox3	aldehyde oxidase 3	0.010
mmgt1	membrane magnesium transporter 1	0.010
dlx3b	distal-less homeobox gene 3b	0.010
etv5b	ets variant 5b	0.010
smad1	MAD homolog 1 (Drosophila)	0.010
fabp2	fatty acid binding protein 2, intestinal	0.010
si:dkey-177e13.4	si:dkey-177e13.4	0.010
nudt5	nudix (nucleoside diphosphate linked moiety X)-type motif 5	0.010
btbd10b	BTB (POZ) domain containing 10b	0.010
fbn2b	fibrillin 2b	0.010