IMP

Process View

Mus musculus

4 genes annotated in mouse

regulation of nuclear transcribed mrna poly a tail shortening

Any process that modulates the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length.

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "regulation of nuclear transcribed mrna poly a tail shortening"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "regulation of nuclear transcribed mrna poly a tail shortening" (in gray)

Name	Description	Probability	Func Analog Organism
Fos	FBJ osteosarcoma oncogene	0.929
Ddx6	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	0.606
Eif2c2	eukaryotic translation initiation factor 2C, 2	0.510
Dusp1	dual specificity phosphatase 1	0.460
Junb	Jun-B oncogene	0.379
Neurl1a	neuralized homolog 1A (Drosophila)	0.339
Ier2	immediate early response 2	0.242
Brd4	bromodomain containing 4	0.178
Tnrc6b	trinucleotide repeat containing 6b	0.162
Egr1	early growth response 1	0.119
Nr4a1	nuclear receptor subfamily 4, group A, member 1	0.116
Btg2	B-cell translocation gene 2, anti-proliferative	0.111	Human
Bcl2l11	BCL2-like 11 (apoptosis facilitator)	0.109
Nfkbia	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	0.101
Trim32	tripartite motif-containing 32	0.098
Pard3	par-3 (partitioning defective 3) homolog (C. elegans)	0.098
Mafk	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	0.098
Jun	Jun oncogene	0.092
Btg1	B-cell translocation gene 1, anti-proliferative	0.092
Klf6	Kruppel-like factor 6	0.084
Mll3	myeloid/lymphoid or mixed-lineage leukemia 3	0.083
Gsk3b	glycogen synthase kinase 3 beta	0.079
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	0.076
Fas	Fas (TNF receptor superfamily member 6)	0.074
Irs2	insulin receptor substrate 2	0.066
Ldb3	LIM domain binding 3	0.066
Prkce	protein kinase C, epsilon	0.066
Vhl	von Hippel-Lindau tumor suppressor	0.058
Cd28	CD28 antigen	0.052
Zfp36	zinc finger protein 36	0.052
Tnfrsf13b	tumor necrosis factor receptor superfamily, member 13b	0.050
Crim1	cysteine rich transmembrane BMP regulator 1 (chordin like)	0.047
Cebpb	CCAAT/enhancer binding protein (C/EBP), beta	0.045
Klf7	Kruppel-like factor 7 (ubiquitous)	0.040
Mll5	myeloid/lymphoid or mixed-lineage leukemia 5	0.039
Vegfa	vascular endothelial growth factor A	0.039
Csrnp1	cysteine-serine-rich nuclear protein 1	0.037
Ncoa1	nuclear receptor coactivator 1	0.035
Bcl2	B-cell leukemia/lymphoma 2	0.035
Klf4	Kruppel-like factor 4 (gut)	0.035
Bptf	bromodomain PHD finger transcription factor	0.035
Arpc4	actin related protein 2/3 complex, subunit 4	0.034
Mapkap1	mitogen-activated protein kinase associated protein 1	0.032
Ppp1r15a	protein phosphatase 1, regulatory (inhibitor) subunit 15A	0.032
Ctdnep1	CTD nuclear envelope phosphatase 1	0.031
Pabpc1	poly(A) binding protein, cytoplasmic 1	0.031
Rela	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	0.030
Cd151	CD151 antigen	0.030
Ilk	integrin linked kinase	0.030
Tomm40	translocase of outer mitochondrial membrane 40 homolog (yeast)	0.029
Tnrc6a	trinucleotide repeat containing 6a	0.028
Rhob	ras homolog gene family, member B	0.028
Mcl1	myeloid cell leukemia sequence 1	0.028
Wnk1	WNK lysine deficient protein kinase 1	0.028
Sp1	trans-acting transcription factor 1	0.027
Rest	RE1-silencing transcription factor	0.026
D19Wsu162e	DNA segment, Chr 19, Wayne State University 162, expressed	0.026
Tnrc6c	trinucleotide repeat containing 6C	0.025	Human
Ptpn22	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	0.025
Midn	midnolin	0.025
Tnfaip3	tumor necrosis factor, alpha-induced protein 3	0.025
Akap9	A kinase (PRKA) anchor protein (yotiao) 9	0.025
Mael	maelstrom homolog (Drosophila)	0.024
Hivep1	human immunodeficiency virus type I enhancer binding protein 1	0.024
Actn2	actinin alpha 2	0.024
Bmpr2	bone morphogenic protein receptor, type II (serine/threonine kinase)	0.023
Synrg	synergin, gamma	0.023
Phlpp1	PH domain and leucine rich repeat protein phosphatase 1	0.023
Pum1	pumilio 1 (Drosophila)	0.023
Kif1b	kinesin family member 1B	0.023
Hsp90ab1	heat shock protein 90 alpha (cytosolic), class B member 1	0.022
Errfi1	ERBB receptor feedback inhibitor 1	0.022
Mapkapk2	MAP kinase-activated protein kinase 2	0.022
Brd2	bromodomain containing 2	0.022
Aff1	AF4/FMR2 family, member 1	0.021
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105	0.021
Per1	period homolog 1 (Drosophila)	0.021
Dyrk1a	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	0.021
Blnk	B-cell linker	0.020
Igh	immunoglobulin heavy chain complex	0.020
Foxo1	forkhead box O1	0.020
Mlf2	myeloid leukemia factor 2	0.019
Pim3	proviral integration site 3	0.019
Sp4	trans-acting transcription factor 4	0.019
Mll1	myeloid/lymphoid or mixed-lineage leukemia 1	0.019
Arhgdia	Rho GDP dissociation inhibitor (GDI) alpha	0.019
Mknk2	MAP kinase-interacting serine/threonine kinase 2	0.019
Nphs2	nephrosis 2 homolog, podocin (human)	0.018
Nfkbiz	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	0.018
Galnt2	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	0.018
Crb2	crumbs homolog 2 (Drosophila)	0.018
Irf2bp2	interferon regulatory factor 2 binding protein 2	0.018
Homer1	homer homolog 1 (Drosophila)	0.018
Dact3	dapper homolog 3, antagonist of beta-catenin (xenopus)	0.018
Pknox1	Pbx/knotted 1 homeobox	0.018
Gnb2l1	guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	0.017
Pparg	peroxisome proliferator activated receptor gamma	0.017
Map3k5	mitogen-activated protein kinase kinase kinase 5	0.017
Tgif1	TGFB-induced factor homeobox 1	0.017
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	0.017
Arid1a	AT rich interactive domain 1A (SWI-like)	0.017
Slc39a7	solute carrier family 39 (zinc transporter), member 7	0.017
Nfkb2	nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	0.016
Ddit4	DNA-damage-inducible transcript 4	0.016
Prkcb	protein kinase C, beta	0.016
Pten	phosphatase and tensin homolog	0.016
Bcl6	B-cell leukemia/lymphoma 6	0.016
Vasp	vasodilator-stimulated phosphoprotein	0.016
Lepr	leptin receptor	0.016
Arc	activity regulated cytoskeletal-associated protein	0.016
Txnip	thioredoxin interacting protein	0.016
Prkca	protein kinase C, alpha	0.016
Tcam1	testicular cell adhesion molecule 1	0.016
Pim1	proviral integration site 1	0.016
Spnb2	spectrin beta 2	0.015
Klf3	Kruppel-like factor 3 (basic)	0.015
Egr2	early growth response 2	0.015
Plxna1	plexin A1	0.015
Tgfbr1	transforming growth factor, beta receptor I	0.015
Atf3	activating transcription factor 3	0.015
Bach1	BTB and CNC homology 1	0.015
Cyr61	cysteine rich protein 61	0.015
Gm2223	predicted pseudogene 2223	0.014
Fosb	FBJ osteosarcoma oncogene B	0.014
Tob2	transducer of ERBB2, 2	0.014
Rora	RAR-related orphan receptor alpha	0.014
Ep300	E1A binding protein p300	0.014
Actn4	actinin alpha 4	0.014
Fbxw7	F-box and WD-40 domain protein 7	0.014
Phf21a	PHD finger protein 21A	0.014
Rhog	ras homolog gene family, member G	0.014
Pik3r1	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	0.014
Bach2	BTB and CNC homology 2	0.014
Sec31a	Sec31 homolog A (S. cerevisiae)	0.013
Ehmt2	euchromatic histone lysine N-methyltransferase 2	0.013
Med13l	mediator complex subunit 13-like	0.013
Dusp5	dual specificity phosphatase 5	0.013
Trim46	tripartite motif-containing 46	0.013
Nfatc1	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	0.013
Itgb1	integrin beta 1 (fibronectin receptor beta)	0.013
Ptgs2	prostaglandin-endoperoxide synthase 2	0.013
Aamp	angio-associated migratory protein	0.013
Alkbh1	alkB, alkylation repair homolog 1 (E. coli)	0.013
Jarid2	jumonji, AT rich interactive domain 2	0.013
Ubc	ubiquitin C	0.013
Smad7	MAD homolog 7 (Drosophila)	0.013
Cdk14	cyclin-dependent kinase 14	0.013
Actb	actin, beta	0.013
Sh2b3	SH2B adaptor protein 3	0.013
Klf2	Kruppel-like factor 2 (lung)	0.013
Ifrd2	interferon-related developmental regulator 2	0.013
Ankhd1	ankyrin repeat and KH domain containing 1	0.013
Pik3cd	phosphatidylinositol 3-kinase catalytic delta polypeptide	0.013
Ptpn11	protein tyrosine phosphatase, non-receptor type 11	0.012
Arhgef2	rho/rac guanine nucleotide exchange factor (GEF) 2	0.012
Foxo3	forkhead box O3	0.012
Smad1	MAD homolog 1 (Drosophila)	0.012
Abca1	ATP-binding cassette, sub-family A (ABC1), member 1	0.012
Rc3h1	RING CCCH (C3H) domains 1	0.012
Capn1	calpain 1	0.012
Mtor	mechanistic target of rapamycin (serine/threonine kinase)	0.012
Klf13	Kruppel-like factor 13	0.012
Eef1a1	eukaryotic translation elongation factor 1 alpha 1	0.012
Abl2	v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)	0.012
Csnk1g2	casein kinase 1, gamma 2	0.012
Cebpa	CCAAT/enhancer binding protein (C/EBP), alpha	0.012
Dusp2	dual specificity phosphatase 2	0.012
Gadd45b	growth arrest and DNA-damage-inducible 45 beta	0.012
Csda	cold shock domain protein A	0.012
Ndel1	nuclear distribution gene E-like homolog 1 (A. nidulans)	0.012
Csnk1e	casein kinase 1, epsilon	0.011
Tiparp	TCDD-inducible poly(ADP-ribose) polymerase	0.011
Pik3c2a	phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	0.011
Mapk8	mitogen-activated protein kinase 8	0.011
Ltbr	lymphotoxin B receptor	0.011
Irs1	insulin receptor substrate 1	0.011
Purb	purine rich element binding protein B	0.011
Sav1	salvador homolog 1 (Drosophila)	0.011
Man1a2	mannosidase, alpha, class 1A, member 2	0.011
Grm1	glutamate receptor, metabotropic 1	0.011
Mlxip	MLX interacting protein	0.011
Mgat4b	mannoside acetylglucosaminyltransferase 4, isoenzyme B	0.011
Pex5	peroxisomal biogenesis factor 5	0.011
Cyld	cylindromatosis (turban tumor syndrome)	0.011
Chd4	chromodomain helicase DNA binding protein 4	0.011
Gnaq	guanine nucleotide binding protein, alpha q polypeptide	0.011
Map2k3	mitogen-activated protein kinase kinase 3	0.011
Cd40	CD40 antigen	0.011
Tbc1d20	TBC1 domain family, member 20	0.011
Lef1	lymphoid enhancer binding factor 1	0.011
Ube3a	ubiquitin protein ligase E3A	0.011
Ids	iduronate 2-sulfatase	0.011
Hcfc1	host cell factor C1	0.011
Ptp4a2	protein tyrosine phosphatase 4a2	0.011
Sorl1	sortilin-related receptor, LDLR class A repeats-containing	0.010
Nfil3	nuclear factor, interleukin 3, regulated	0.010
Spin1	spindlin 1	0.010
Dnmt3a	DNA methyltransferase 3A	0.010
Ets2	E26 avian leukemia oncogene 2, 3' domain	0.010
Crebbp	CREB binding protein	0.010
Kifc2	kinesin family member C2	0.010
Lep	leptin	0.010
Pxt1	peroxisomal, testis specific 1	0.010
Mau2	MAU2 chromatid cohesion factor homolog (C. elegans)	0.010
Gpd2	glycerol phosphate dehydrogenase 2, mitochondrial	0.010
Trp53bp2	transformation related protein 53 binding protein 2	0.010
Ift140	intraflagellar transport 140 homolog (Chlamydomonas)	0.010
Kiss1	KiSS-1 metastasis-suppressor	0.010
Ctdsp1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	0.010
Ldb1	LIM domain binding 1	0.010