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Mus musculus

4 genes annotated in mouse

glossopharyngeal nerve morphogenesis

The process in which the anatomical structure of the glossopharyngeal nerve is generated and organized. Various sensory and motor branches of the glossopharyngeal nerve supply nerve connections to the pharynx and back of the tongue. The branchial motor component contains motor fibers that innervate muscles that elevate the pharynx and larynx, and the tympanic branch supplies parasympathetic fibers to the otic ganglion.

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Known genes in the process in mouse Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "glossopharyngeal nerve morphogenesis"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "glossopharyngeal nerve morphogenesis" (in gray)

Name	Description	Probability	Func Analog Organism
Hoxd3	homeobox D3	1.000
Rarg	retinoic acid receptor, gamma	0.999
Arhgef11	Rho guanine nucleotide exchange factor (GEF) 11	0.995
Sema6a	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	0.932
Tbx1	T-box 1	0.898
Rara	retinoic acid receptor, alpha	0.882
Hoxb3	homeobox B3	0.880
Hoxa2	homeobox A2	0.867
Rarb	retinoic acid receptor, beta	0.816
Eya1	eyes absent 1 homolog (Drosophila)	0.698
Hoxa1	homeobox A1	0.695
Hoxa3	homeobox A3	0.683
Arhgef12	Rho guanine nucleotide exchange factor (GEF) 12	0.659
Chrd	chordin	0.642
Nrp1	neuropilin 1	0.627
Vegfa	vascular endothelial growth factor A	0.573
Tcfap2a	transcription factor AP-2, alpha	0.509
Hoxd1	homeobox D1	0.492
Hoxb4	homeobox B4	0.478
Hoxb5	homeobox B5	0.475
Hoxb6	homeobox B6	0.459
Ednra	endothelin receptor type A	0.450
Hoxb1	homeobox B1	0.433
St8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	0.375
Pax9	paired box gene 9	0.355
Hoxb2	homeobox B2	0.238
Foxc2	forkhead box C2	0.228
Sdc3	syndecan 3	0.198
Epha4	Eph receptor A4	0.195
Hoxa5	homeobox A5	0.185
Ece1	endothelin converting enzyme 1	0.182
Ebf3	early B-cell factor 3	0.178
Hoxd9	homeobox D9	0.140
Fgf8	fibroblast growth factor 8	0.128
Sall3	sal-like 3 (Drosophila)	0.125
Gnaq	guanine nucleotide binding protein, alpha q polypeptide	0.124
Hoxb8	homeobox B8	0.118
Ripply3	ripply3 homolog (zebrafish)	0.113
Fscn1	fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)	0.101
Nrp2	neuropilin 2	0.095
Wnt1	wingless-related MMTV integration site 1	0.091
Gli3	GLI-Kruppel family member GLI3	0.091
Gdf11	growth differentiation factor 11	0.088
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	0.087
Hoxc4	homeobox C4	0.087
Hdac7	histone deacetylase 7	0.086
Dlx5	distal-less homeobox 5	0.084
Ephb2	Eph receptor B2	0.078
Pax3	paired box gene 3	0.076
Sim1	single-minded homolog 1 (Drosophila)	0.074
Hoxa9	homeobox A9	0.070
Phox2b	paired-like homeobox 2b	0.070
Hoxb9	homeobox B9	0.068
Gfra3	glial cell line derived neurotrophic factor family receptor alpha 3	0.066
Nynrin	NYN domain and retroviral integrase containing	0.065
Cdon	cell adhesion molecule-related/down-regulated by oncogenes	0.063
Six2	sine oculis-related homeobox 2 homolog (Drosophila)	0.062
Aldh1a2	aldehyde dehydrogenase family 1, subfamily A2	0.061
Efna4	ephrin A4	0.061
Ikzf4	IKAROS family zinc finger 4	0.059
Mesp1	mesoderm posterior 1	0.057
Pou3f2	POU domain, class 3, transcription factor 2	0.055
Tgfbr2	transforming growth factor, beta receptor II	0.054
Hif3a	hypoxia inducible factor 3, alpha subunit	0.048
Efna2	ephrin A2	0.048
Hoxc6	homeobox C6	0.048
Tlx2	T-cell leukemia, homeobox 2	0.047
Nhlh1	nescient helix loop helix 1	0.046
Rgnef	Rho-guanine nucleotide exchange factor	0.042
Msx3	homeobox, msh-like 3	0.041
Fzd1	frizzled homolog 1 (Drosophila)	0.040
Tead3	TEA domain family member 3	0.040
Olfr71	olfactory receptor 71	0.040
Foxd2	forkhead box D2	0.039
Celsr2	cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	0.039
Vangl2	vang-like 2 (van gogh, Drosophila)	0.038
Ptf1a	pancreas specific transcription factor, 1a	0.038
Krt2	keratin 2	0.038
Efnb1	ephrin B1	0.037
Cacng4	calcium channel, voltage-dependent, gamma subunit 4	0.037
Dlx2	distal-less homeobox 2	0.037
Hba-x	hemoglobin X, alpha-like embryonic chain in Hba complex	0.036
Ihh	Indian hedgehog	0.036
Olig3	oligodendrocyte transcription factor 3	0.033
Pax7	paired box gene 7	0.033
Cbx2	chromobox homolog 2 (Drosophila Pc class)	0.033
Dlx3	distal-less homeobox 3	0.033
Atoh1	atonal homolog 1 (Drosophila)	0.032
Hoxc8	homeobox C8	0.032
Nckap5l	NCK-associated protein 5-like	0.032
Arhgef2	rho/rac guanine nucleotide exchange factor (GEF) 2	0.032
Dag1	dystroglycan 1	0.032
Lamc1	laminin, gamma 1	0.031
5730559C18Rik	RIKEN cDNA 5730559C18 gene	0.031
Sema5a	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	0.031
Hoxc5	homeobox C5	0.030
Axin2	axin2	0.030
Pou3f3	POU domain, class 3, transcription factor 3	0.030
Pbx1	pre B-cell leukemia transcription factor 1	0.030
Hoxa4	homeobox A4	0.029
Hoxd4	homeobox D4	0.029
Zp3	zona pellucida glycoprotein 3	0.029
Myod1	myogenic differentiation 1	0.029
Grb10	growth factor receptor bound protein 10	0.028
Rxra	retinoid X receptor alpha	0.028
Hoxa11	homeobox A11	0.028
Sh3rf1	SH3 domain containing ring finger 1	0.028
Fgfr4	fibroblast growth factor receptor 4	0.028
Klf12	Kruppel-like factor 12	0.028
Sirpa	signal-regulatory protein alpha	0.028
Nkx3-2	NK3 homeobox 2	0.027
Shbg	sex hormone binding globulin	0.027
Dcc	deleted in colorectal carcinoma	0.027
Hip1	huntingtin interacting protein 1	0.027
Dock4	dedicator of cytokinesis 4	0.027
Polm	polymerase (DNA directed), mu	0.027
Dpysl2	dihydropyrimidinase-like 2	0.027
Emid2	EMI domain containing 2	0.026
Sspo	SCO-spondin	0.026
Foxb1	forkhead box B1	0.025
Foxi1	forkhead box I1	0.025
Gpr27	G protein-coupled receptor 27	0.024
Lmx1a	LIM homeobox transcription factor 1 alpha	0.024
Chrna4	cholinergic receptor, nicotinic, alpha polypeptide 4	0.024
Cldn8	claudin 8	0.024
Ccr1l1	chemokine (C-C motif) receptor 1-like 1	0.024
Tshz1	teashirt zinc finger family member 1	0.024
Apc2	adenomatosis polyposis coli 2	0.023
Pax8	paired box gene 8	0.023
Lbx1	ladybird homeobox homolog 1 (Drosophila)	0.023
Sema6d	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	0.023
Tbx2	T-box 2	0.023
Bmp7	bone morphogenetic protein 7	0.023
Slc22a12	solute carrier family 22 (organic anion/cation transporter), member 12	0.023
Hoxa10	homeobox A10	0.022
Hoxd10	homeobox D10	0.022
Tcf21	transcription factor 21	0.022
Nes	nestin	0.022
Unc5c	unc-5 homolog C (C. elegans)	0.021
Tspan9	tetraspanin 9	0.021
Gdnf	glial cell line derived neurotrophic factor	0.020
Casp14	caspase 14	0.020
Six1	sine oculis-related homeobox 1 homolog (Drosophila)	0.020
Fam83h	family with sequence similarity 83, member H	0.020
Six5	sine oculis-related homeobox 5 homolog (Drosophila)	0.020
Lrp1	low density lipoprotein receptor-related protein 1	0.019
Zp2	zona pellucida glycoprotein 2	0.019
Pknox1	Pbx/knotted 1 homeobox	0.019
Fgf3	fibroblast growth factor 3	0.018
Lhx1	LIM homeobox protein 1	0.018
Fev	FEV (ETS oncogene family)	0.018
Igdcc3	immunoglobulin superfamily, DCC subclass, member 3	0.018
Lrfn1	leucine rich repeat and fibronectin type III domain containing 1	0.018
Nkx1-2	NK1 transcription factor related, locus 2 (Drosophila)	0.018
Fgfr1	fibroblast growth factor receptor 1	0.018
Slc4a1	solute carrier family 4 (anion exchanger), member 1	0.018
Cd1d2	CD1d2 antigen	0.017
Ncs1	neuronal calcium sensor 1	0.017
Phldb1	pleckstrin homology-like domain, family B, member 1	0.017
Foxa1	forkhead box A1	0.017
Prrt1	proline-rich transmembrane protein 1	0.017
Lama5	laminin, alpha 5	0.017
Sema3f	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	0.017
Wnt6	wingless-related MMTV integration site 6	0.017
F9	coagulation factor IX	0.017
Mycl1	v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)	0.016
Notch3	Notch gene homolog 3 (Drosophila)	0.016
Hspg2	perlecan (heparan sulfate proteoglycan 2)	0.016
St3gal2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	0.016
Pax1	paired box gene 1	0.016
Hoxd13	homeobox D13	0.016
Dlk1	delta-like 1 homolog (Drosophila)	0.016
Magel2	melanoma antigen, family L, 2	0.015
Clip2	CAP-GLY domain containing linker protein 2	0.015
Htr1b	5-hydroxytryptamine (serotonin) receptor 1B	0.015
Muc20	mucin 20	0.015
Pax2	paired box gene 2	0.015
Igfbp1	insulin-like growth factor binding protein 1	0.015
Klf3	Kruppel-like factor 3 (basic)	0.015
Odz4	odd Oz/ten-m homolog 4 (Drosophila)	0.015
Dach1	dachshund 1 (Drosophila)	0.015
Tcfap2b	transcription factor AP-2 beta	0.014
Krtap13	keratin associated protein 13	0.014
Zbtb12	zinc finger and BTB domain containing 12	0.014
Ptk7	PTK7 protein tyrosine kinase 7	0.014
Zfp503	zinc finger protein 503	0.014
Aif1l	allograft inflammatory factor 1-like	0.014
Wiz	widely-interspaced zinc finger motifs	0.014
Gata2	GATA binding protein 2	0.014
Glis1	GLIS family zinc finger 1	0.014
Spef1	sperm flagellar 1	0.014
Itm2c	integral membrane protein 2C	0.014
Hoxa7	homeobox A7	0.014
Defa-rs10	defensin, alpha, related sequence 10	0.013
Traf4	TNF receptor associated factor 4	0.013
Aff1	AF4/FMR2 family, member 1	0.013
Edaradd	EDAR (ectodysplasin-A receptor)-associated death domain	0.013
Isl2	insulin related protein 2 (islet 2)	0.013
Irx1	Iroquois related homeobox 1 (Drosophila)	0.013
Efnb2	ephrin B2	0.013
Nfia	nuclear factor I/A	0.013
Ntsr1	neurotensin receptor 1	0.013
Krt86	keratin 86	0.013
Sox3	SRY-box containing gene 3	0.013
Hoxd8	homeobox D8	0.013
Pea15a	phosphoprotein enriched in astrocytes 15A	0.013
Capn5	calpain 5	0.013
Cic	capicua homolog (Drosophila)	0.013
Sox4	SRY-box containing gene 4	0.013
Nkx2-5	NK2 transcription factor related, locus 5 (Drosophila)	0.013
Tgfbr3	transforming growth factor, beta receptor III	0.013
Fmnl3	formin-like 3	0.012
Smad6	MAD homolog 6 (Drosophila)	0.012
Hmx2	H6 homeobox 2	0.012
Cdh3	cadherin 3	0.012
Adam12	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	0.012
BC020535	cDNA sequence BC020535	0.012
Wnt7b	wingless-related MMTV integration site 7B	0.012
Mab21l2	mab-21-like 2 (C. elegans)	0.012
Pdgfb	platelet derived growth factor, B polypeptide	0.012
Kdr	kinase insert domain protein receptor	0.012
Arl10	ADP-ribosylation factor-like 10	0.012
Alk	anaplastic lymphoma kinase	0.012
Slc12a3	solute carrier family 12, member 3	0.012
Vsx2	visual system homeobox 2	0.012
Csf3	colony stimulating factor 3 (granulocyte)	0.012
Sh3pxd2a	SH3 and PX domains 2A	0.012
Il17a	interleukin 17A	0.012
Cplx2	complexin 2	0.012
Fam110a	family with sequence similarity 110, member A	0.012
Spi15	serine protease inhibitor 15	0.012
Src	Rous sarcoma oncogene	0.012
Tacr2	tachykinin receptor 2	0.012
Apbh	androgen-binding protein eta	0.012
Zfp618	zinc fingerprotein 618	0.011
Npy6r	neuropeptide Y receptor Y6	0.011
Fgf10	fibroblast growth factor 10	0.011
Atp8a1	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	0.011
Ptcra	pre T-cell antigen receptor alpha	0.011
Snai1	snail homolog 1 (Drosophila)	0.011
Plxnd1	plexin D1	0.011	Mouse
Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	0.011
Rhcg	Rhesus blood group-associated C glycoprotein	0.011
Foxc1	forkhead box C1	0.011
Zic4	zinc finger protein of the cerebellum 4	0.011
Plxnb1	plexin B1	0.011	Mouse
Epb4.1l2	erythrocyte protein band 4.1-like 2	0.011
Neurog1	neurogenin 1	0.011
Zic2	zinc finger protein of the cerebellum 2	0.011
Atp13a2	ATPase type 13A2	0.011
Adra2b	adrenergic receptor, alpha 2b	0.011
Rgs3	regulator of G-protein signaling 3	0.011
Col12a1	collagen, type XII, alpha 1	0.011
Cdh6	cadherin 6	0.011
Ncam2	neural cell adhesion molecule 2	0.011
Zfp703	zinc finger protein 703	0.011
Sox10	SRY-box containing gene 10	0.011
Akt3	thymoma viral proto-oncogene 3	0.011
Pik3c2g	phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	0.011
Pcsk5	proprotein convertase subtilisin/kexin type 5	0.011
Arnt2	aryl hydrocarbon receptor nuclear translocator 2	0.011
Phlda2	pleckstrin homology-like domain, family A, member 2	0.011
Gfra2	glial cell line derived neurotrophic factor family receptor alpha 2	0.011
Sept9	septin 9	0.011
Wnt9b	wingless-type MMTV integration site 9B	0.011
Efna5	ephrin A5	0.011
Dolpp1	dolichyl pyrophosphate phosphatase 1	0.010
Hoxb7	homeobox B7	0.010
Cox8c	cytochrome c oxidase, subunit VIIIc	0.010
Upk2	uroplakin 2	0.010
Dao	D-amino acid oxidase	0.010
Cdk14	cyclin-dependent kinase 14	0.010
Plac1	placental specific protein 1	0.010
Nav1	neuron navigator 1	0.010
Chrna7	cholinergic receptor, nicotinic, alpha polypeptide 7	0.010
Fjx1	four jointed box 1 (Drosophila)	0.010
Zfp36l2	zinc finger protein 36, C3H type-like 2	0.010
Sim2	single-minded homolog 2 (Drosophila)	0.010
Cldn4	claudin 4	0.010
Mmp15	matrix metallopeptidase 15	0.010
Trim8	tripartite motif-containing 8	0.010
Sox21	SRY-box containing gene 21	0.010
Ptpru	protein tyrosine phosphatase, receptor type, U	0.010