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Danio rerio

18 genes annotated in zebrafish

notochord cell differentiation

The process in which relatively unspecialized cells acquire specialized structural and/or functional features cells that make up the notochord. Differentiation includes the processes involved in commitment of a cell to a notochord cell fate.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "notochord cell differentiation"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "notochord cell differentiation" (in gray)

Name	Description	Probability	Func Analog Organism
bmp2b	bone morphogenetic protein 2b	0.823	Zebrafish
dld	deltaD	0.808	Zebrafish
tbx16	T-box gene 16	0.762	Zebrafish
shha	sonic hedgehog a	0.720
flh	floating head	0.700
dla	deltaA	0.648
tbx2b	T-box 2b	0.644	Zebrafish
bmp4	bone morphogenetic protein 4	0.601
ntla	no tail a	0.598
sox10	SRY-box containing gene 10	0.564
pax2a	paired box gene 2a	0.512
hnf1ba	HNF1 homeobox Ba	0.488
slc45a2	solute carrier family 45, member 2	0.451
aldh1a2	aldehyde dehydrogenase 1 family, member A2	0.427
chd	chordin	0.337
atp6v1h	ATPase, H+ transporting, lysosomal, V1 subunit H	0.309
cdh5	cadherin 5	0.293
atp6v1e1b	ATPase, H+ transporting, lysosomal, V1 subunit E isoform 1b	0.229
hand2	heart and neural crest derivatives expressed transcript 2	0.213
neurog1	neurogenin 1	0.213
cdh2	cadherin 2, neuronal	0.212
cdx4	caudal type homeo box transcription factor 4	0.194
cyp26a1	cytochrome P450, subfamily XXVIA, polypeptide 1	0.178
prdm1a	PR domain containing 1a, with ZNF domain	0.127
her1	hairy-related 1	0.125
ascl1a	achaete-scute complex-like 1a (Drosophila)	0.120
tbx20	T-box 20	0.117	Zebrafish
fgf8a	fibroblast growth factor 8 a	0.114
isl1	islet1	0.112
notch3	notch homolog 3	0.083
dlb	deltaB	0.076	Zebrafish
gli2a	GLI-Kruppel family member GLI2a	0.074
atp6v1f	ATPase, H+ transporting, V1 subunit F	0.065
vps39	vacuolar protein sorting 39 homolog (S. cerevisiae)	0.062
nkx2.3	NK2 transcription factor related 3	0.062
foxa2	forkhead box A2	0.059
neb	nebulin	0.059
eve1	even-skipped-like1	0.058
nkx2.5	NK2 transcription factor related 5	0.058
col8a1a	collagen, type VIII, alpha 1a	0.057
notch1a	notch homolog 1a	0.056
lft1	lefty1	0.054
fgfr4	fibroblast growth factor receptor 4	0.053
lhx1a	LIM homeobox 1a	0.053
nanos3	nanos homolog 3	0.053
osr2	odd-skipped related 2 (Drosophila)	0.052
jag1a	jagged 1a	0.050	Zebrafish
vcana	versican a	0.049
atp6v0ca	ATPase, H+ transporting, lysosomal, V0 subunit c, a	0.048
cdon	cell adhesion molecule-related/down-regulated by oncogenes	0.047
foxa1	forkhead box A1	0.047
foxa3	forkhead box A3	0.046
unc5b	unc-5 homolog B (C. elegans)	0.046
foxi1	forkhead box I1	0.044
otpb	orthopedia homolog b	0.044
pkd2	polycystic kidney disease 2	0.041
dbx1b	developing brain homeobox 1b	0.041
zgc:100919	zgc:100919	0.041
irx1b	iroquois homeobox protein 1, b	0.040
sox21b	SRY-box containing gene 21 b	0.040
olig2	oligodendrocyte lineage transcription factor 2	0.040
actn1	actinin, alpha 1	0.040
tbx2a	T-box gene 2a	0.039	Zebrafish
fzd7b	frizzled homolog 7b	0.038
atp6v1a	ATPase, H+ transporting, lysosomal V1 subunit A	0.037
lef1	lymphocyte enhancer binding factor 1	0.037
pitx3	paired-like homeodomain transcription factor 3	0.037
myl7	myosin, light polypeptide 7, regulatory	0.037
insm1b	insulinoma-associated 1b	0.036
fgf10a	fibroblast growth factor 10a	0.036
tbx3	T-box 3	0.036	Zebrafish
flot1	flotillin 1	0.035
nog2	noggin 2	0.035
crabp2a	cellular retinoic acid binding protein 2, a	0.035
vps18	vacuolar protein sorting protein 18	0.033
hhex	hematopoietically expressed homeobox	0.033
fn1	fibronectin 1	0.032
rxraa	retinoid X receptor, alpha a	0.029
lrrc6	leucine rich repeat containing 6	0.029
col27a1a	collagen, type XXVII, alpha 1a	0.028
ptch2	patched 2	0.027
smoc2	secreted modular calcium binding protein 2	0.026
stmn2a	stathmin-like 2a	0.026
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.026
wnt11	wingless-type MMTV integration site family, member 11	0.026
wu:fb16e05	wu:fb16e05	0.026
dcc	deleted in colorectal carcinoma	0.025
synpo2lb	synaptopodin 2-like b	0.025
dlx2a	distal-less homeobox gene 2a	0.024
optc	opticin	0.024
plod2	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	0.024
smo	smoothened homolog (Drosophila)	0.024
neurod6b	neurogenic differentiation 6b	0.024
nfatc1	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	0.023
irx5b	iroquois homeobox protein 5b	0.023
tbx5a	T-box 5a	0.022	Zebrafish
pou5f1	POU domain, class 5, transcription factor 1	0.022
egr1	early growth response 1	0.022
isl2a	islet2a	0.022
kita	kit receptor a	0.021
tbx5b	T-box 5b	0.021
pmela	premelanosome protein a	0.021
her7	hairy and enhancer of split related-7	0.021
frem3	Fras1 related extracellular matrix 3	0.021
desma	desmin a	0.020
dlc	deltaC	0.020	Zebrafish
musk	muscle, skeletal, receptor tyrosine kinase	0.019
fgfrl1a	fibroblast growth factor receptor-like 1a	0.019
LOC100538023	hypothetical protein LOC100538023	0.019
hoxc8a	homeo box C8a	0.018
bokb	BCL2-related ovarian killer b	0.018
zgc:110088	zgc:110088	0.018
gcm2	glial cells missing homolog 2 (Drosophila)	0.018
ucn3l	urocortin 3, like	0.018
nkx2.2a	NK2 transcription factor related 2a	0.018
sulf2	sulfatase 2	0.018
bmp10	bone morphogenetic protein 10	0.017
col9a2	procollagen, type IX, alpha 2	0.017
hoxd11a	homeo box D11a	0.017
micall1	MICAL-like 1	0.017
rfx2	regulatory factor X, 2 (influences HLA class II expression)	0.017
zgc:113312	zgc:113312	0.017
cltca	clathrin, heavy polypeptide a (Hc)	0.017
atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	0.017
mib	mind bomb	0.017
jag2	jagged 2	0.017	Zebrafish
nrp2b	neuropilin 2b	0.017
wu:fb01h12	wu:fb01h12	0.016
slc24a5	solute carrier family 24, member 5	0.016
fgf3	fibroblast growth factor 3	0.016
mapta	microtubule-associated protein tau a	0.016
epyc	epiphycan	0.016
eya1	eyes absent homolog 1	0.015
insm1a	insulinoma-associated 1a	0.015
plod3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	0.015
arfip1	ADP-ribosylation factor interacting protein 1 (arfaptin 1)	0.015
her13	hairy-related 13	0.015
msgn1	mesogenin 1	0.015
pcdh18b	protocadherin 18b	0.014
slit3	slit (Drosophila) homolog 3	0.014
stap2a	signal transducing adaptor family member 2a	0.014
twist2	twist2	0.014
serpini1	serpin peptidase inhibitor, clade I (neuroserpin), member 1	0.014
hlxb9la	homeo box HB9 like a	0.014
unc45a	unc-45 homolog A (C. elegans)	0.014
fgf20a	fibroblast growth factor 20a	0.014
id1	inhibitor of DNA binding 1	0.014
cldn5b	claudin 5b	0.014
gpc4	glypican 4	0.014
kitlga	kit ligand a	0.014
nppa	natriuretic peptide precursor A	0.014
foxh1	forkhead box H1	0.014
foxc1a	forkhead box C1a	0.014
fbln1	fibulin 1	0.013
pfkfb1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	0.013
hoxc6a	homeo box C6a	0.013
rogdi	rogdi homolog (Drosophila)	0.013
nfix	nuclear factor I/X	0.013
gfi1.1	growth factor independent 1.1	0.013
actc1a	actin, alpha, cardiac muscle 1a	0.013
grem2	gremlin 2, cysteine knot superfamily	0.013
bcam	basal cell adhesion molecule (Lutheran blood group)	0.013
sb:eu2485	sb:eu2485	0.013
dbx1a	developing brain homeobox 1a	0.013
otx2	orthodenticle homolog 2	0.013
hey2	hairy/enhancer-of-split related with YRPW motif 2	0.013
hs6st2	heparan sulfate 6-O-sulfotransferase 2	0.013
zgc:114164	zgc:114164	0.013
myod1	myogenic differentiation 1	0.013
tgfb3	transforming growth factor, beta 3	0.012
rbm24a	RNA binding motif protein 24a	0.012
emilin3a	elastin microfibril interfacer 3a	0.012
tal2	T-cell acute lymphocytic leukemia 2	0.012
hoxa13b	homeo box A13b	0.012
pou3f3b	POU class 3 homeobox 3b	0.012
dpysl4	dihydropyrimidinase-like 4	0.012
gbx1	gastrulation brain homeobox 1	0.012
ptch1	patched 1	0.012
rbp1b	retinol binding protein 1b, cellular	0.012
rargb	retinoic acid receptor, gamma b	0.012
efna5a	ephrin A5a	0.012
mybpc2b	myosin binding protein C, fast type b	0.012
rbfox1l	RNA binding protein, fox-1 homolog (C. elegans) 1-like	0.012
irx3a	iroquois homeobox protein 3a	0.012
pdcd6	programmed cell death 6	0.012
gli1	GLI-Kruppel family member 1	0.012
evx1	even-skipped homeobox 1	0.012
efemp2	EGF-containing fibulin-like extracellular matrix protein 2	0.011
ltk	leukocyte tyrosine kinase	0.011
cntn2	contactin 2	0.011
scrt2	scratch homolog 2, zinc finger protein (Drosophila)	0.011
gdf6a	growth differentiation factor 6a	0.011
cry2b	cryptochrome 2b	0.011
wu:fi04f09	wu:fi04f09	0.011
emilin1a	elastin microfibril interfacer 1a	0.011
lrrc10	leucine rich repeat containing 10	0.011
notch2	notch homolog 2	0.011
s100a1	S100 calcium binding protein A1	0.011
crmp1	collapsin response mediator protein 1	0.011
gata2a	GATA-binding protein 2a	0.011
tjp2b	tight junction protein 2b (zona occludens 2)	0.011
mycn	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	0.011
bcdo2l	beta-carotene 15, 15-dioxygenase 2, like	0.011
cftr	cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)	0.011
scn12ab	sodium channel, voltage gated, type XII, alpha b	0.011
rhoua	ras homolog gene family, member Ua	0.011
hapln3	hyaluronan and proteoglycan link protein 3	0.011
aanat2	arylalkylamine N-acetyltransferase	0.011
myl1	myosin, light chain 1, alkali; skeletal, fast	0.010
myf5	myogenic factor 5	0.010
sox19b	SRY-box containing gene 19b	0.010
glud1b	glutamate dehydrogenase 1b	0.010
rxrgb	retinoid X receptor, gamma b	0.010
LOC556849	ectonucleoside triphosphate diphosphohydrolase 5-like	0.010
cd151l	CD151 antigen, like	0.010
meis3	myeloid ecotropic viral integration site 3	0.010
ctr9	Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.010
atp6ap2	ATPase, H+ transporting, lysosomal accessory protein 2	0.010