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Process View

Danio rerio

4 genes annotated in zebrafish

axial mesoderm formation

The process that gives rise to the axial mesoderm. This process pertains to the initial formation of the structure from unspecified parts.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "axial mesoderm formation"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "axial mesoderm formation" (in gray)

Name	Description	Probability	Func Analog Organism
ntla	no tail a	0.998
chd	chordin	0.998
oep	one-eyed pinhead	0.998
ndr2	nodal-related 2	0.998
flh	floating head	0.995
sox32	SRY-box containing gene 32	0.986
tbx16	T-box gene 16	0.975
ndr1	nodal-related 1	0.970
shha	sonic hedgehog a	0.968
wnt11	wingless-type MMTV integration site family, member 11	0.960
pou5f1	POU domain, class 5, transcription factor 1	0.948
fgf8a	fibroblast growth factor 8 a	0.865
mib	mind bomb	0.858
bmp7a	bone morphogenetic protein 7a	0.825
dharma	dharma	0.786
cdx4	caudal type homeo box transcription factor 4	0.714
smo	smoothened homolog (Drosophila)	0.700
foxh1	forkhead box H1	0.644
admp	anti-dorsalizing morphogenic protein	0.628
vangl2	vang-like 2 (van gogh, Drosophila)	0.565
gli1	GLI-Kruppel family member 1	0.554
bon	bonnie and clyde	0.547
dld	deltaD	0.535
ptch1	patched 1	0.484
bmp2b	bone morphogenetic protein 2b	0.437
pax2a	paired box gene 2a	0.385
gpc4	glypican 4	0.365
dzip1	DAZ interacting protein 1	0.364
lhx1a	LIM homeobox 1a	0.349
vent	ventral expressed homeobox	0.325
lft1	lefty1	0.310
tbx1	T-box 1	0.305
eve1	even-skipped-like1	0.285
cdh2	cadherin 2, neuronal	0.269
mpp5a	membrane protein, palmitoylated 5a (MAGUK p55 subfamily member 5a)	0.250
foxi1	forkhead box I1	0.223
wnt5b	wingless-type MMTV integration site family, member 5b	0.198
lft2	lefty2	0.192
hnf1ba	HNF1 homeobox Ba	0.189
eomesa	eomesodermin homolog a	0.178
rx3	retinal homeobox gene 3	0.149
smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.147
tll1	tolloid-like 1	0.144
nanos3	nanos homolog 3	0.143
her7	hairy and enhancer of split related-7	0.138
ptch2	patched 2	0.135
tbx24	T-box 24	0.124
dkk1b	dickkopf 1b	0.110
spns2	spinster homolog 2 (Drosophila)	0.110
rerea	arginine-glutamic acid dipeptide (RE) repeats a	0.109
lrrc6	leucine rich repeat containing 6	0.108
aldh1a2	aldehyde dehydrogenase 1 family, member A2	0.105
foxd3	forkhead box D3	0.105
med12	mediator of RNA polymerase II transcription, subunit 12 homolog	0.102
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.099
scrib	scribbled homolog (Drosophila)	0.098
szl	sizzled	0.098
smad5	MAD homolog 5 (Drosophila)	0.096
nog1	noggin 1	0.089
tp53	tumor protein p53	0.087
og9x	OG9 homeobox gene	0.086
foxa3	forkhead box A3	0.079
foxd5	forkhead box D5	0.077
vasa	vasa homolog	0.071
bmpr1aa	bone morphogenetic protein receptor, type 1aa	0.067
mxtx2	mix-type homeobox gene 2	0.063
nxph1	neurexophilin 1	0.061
pkd2	polycystic kidney disease 2	0.057
notch1a	notch homolog 1a	0.056
sox17	SRY-box containing gene 17	0.052
zgc:193933	zgc:193933	0.052
atoh7	atonal homolog 7	0.051
fn1	fibronectin 1	0.050
col8a1a	collagen, type VIII, alpha 1a	0.047
otx1a	orthodenticle homolog 1a	0.045
snai1a	snail homolog 1a (Drosophila)	0.044
vox	ventral homeobox	0.044
acvr1b	activin A receptor, type IB	0.044
cdc25	cell division cycle 25 homolog	0.043
sim1a	single-minded homolog 1a (Drosophila)	0.042
tfap2a	transcription factor AP-2 alpha	0.042
cftr	cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)	0.038
scube2	signal peptide, CUB domain, EGF-like 2	0.037
cdh1	cadherin 1, epithelial	0.036
foxa2	forkhead box A2	0.036
acvr1l	activin A receptor, type I like	0.033
sst1.1	somatostatin 1, tandem duplicate 1	0.033
bmp4	bone morphogenetic protein 4	0.033
lrrc50	leucine rich repeat containing 50	0.032
dla	deltaA	0.032
fzd8b	frizzled homolog 8b	0.030
fezf2	FEZ family zinc finger 2	0.030
msgn1	mesogenin 1	0.030
nkx6.1	NK6 transcription factor related, locus 1 (Drosophila)	0.029
fgf3	fibroblast growth factor 3	0.028
wnt4b	wingless-type MMTV integration site family, member 4b	0.028
arnt2	aryl hydrocarbon receptor nuclear translocator 2	0.028
fzd5	frizzled homolog 5	0.027
hand2	heart and neural crest derivatives expressed transcript 2	0.026
apc	adenomatosis polyposis coli	0.026
gli2a	GLI-Kruppel family member GLI2a	0.025
epha4b	eph receptor A4b	0.024
brd4	bromodomain containing 4	0.024
piwil2	piwi-like 2 (Drosophila)	0.023
ippk	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	0.023
dact1	dapper homolog 1, antagonist of beta-catenin (xenopus)	0.023
pbx4	pre-B-cell leukemia transcription factor 4	0.022
tdrd7	tudor domain containing 7	0.021
disp1	dispatched homolog 1 (Drosophila)	0.021
vsx1	visual system homeobox 1 homolog, chx10-like	0.021
gro2	groucho 2	0.021
her1	hairy-related 1	0.020
sox10	SRY-box containing gene 10	0.020
nkx2.2a	NK2 transcription factor related 2a	0.019
ihhb	Indian hedgehog homolog b	0.019
cxcr4a	chemokine (C-X-C motif) receptor 4a	0.018
gata5	GATA-binding protein 5	0.018
sf3b1	splicing factor 3b, subunit 1	0.018
rest	RE1-silencing transcription factor	0.018
sox9b	SRY-box containing gene 9b	0.017
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.017
lamb1a	laminin, beta 1a	0.017
sox9a	SRY-box containing gene 9a	0.017
top2a	topoisomerase (DNA) II alpha	0.017
mespa	mesoderm posterior a	0.016
ca15b	carbonic anhydrase XV b	0.016
tbx6	T-box gene 6	0.016
lamc1	laminin, gamma 1	0.016
axin1	axin 1	0.015	Mouse
pcdh8	protocadherin 8	0.015
hlxb9la	homeo box HB9 like a	0.015
dazl	daz-like gene	0.015
prl	prolactin	0.015
ppp1r12a	protein phosphatase 1, regulatory (inhibitor) subunit 12A	0.015
ihha	Indian hedgehog homolog a	0.015
dlc	deltaC	0.015
tbx2b	T-box 2b	0.014
prkci	protein kinase C, iota	0.014
lhx1b	LIM homeobox 1b	0.014
chrna2a	cholinergic receptor, nicotinic, alpha polypeptide 2a (neuronal)	0.014
angpt1	angiopoietin 1	0.014
ints6	integrator complex subunit 6	0.013
lnx2b	ligand of numb-protein X 2b	0.013
lhx5	LIM homeobox 5	0.013
plcg1	phospholipase C, gamma 1	0.013
mef2ca	myocyte enhancer factor 2ca	0.013
mll	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)	0.013
lfng	lunatic fringe homolog	0.013
foxn4	forkhead box N4	0.013
grem2	gremlin 2, cysteine knot superfamily	0.012
sox19b	SRY-box containing gene 19b	0.012
zgc:111821	zgc:111821	0.012
otx1b	orthodenticle homolog 1b	0.012
mos	v-mos Moloney murine sarcoma viral oncogene homolog	0.012
chrnd	cholinergic receptor, nicotinic, delta polypeptide	0.012
tcf21	transcription factor 21	0.012
frzb	frizzled-related protein	0.012
vsx2	visual system homeobox 2	0.011	Zebrafish
gsc	goosecoid	0.011	Zebrafish
dnd	dead end	0.011
dlx6a	distal-less homeobox gene 6a	0.011
sybu	syntabulin (syntaxin-interacting)	0.011
myf5	myogenic factor 5	0.011
cyp26a1	cytochrome P450, subfamily XXVIA, polypeptide 1	0.011
boc	brother of CDO	0.010
gbx1	gastrulation brain homeobox 1	0.010