IMP

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Danio rerio

4 genes annotated in zebrafish

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gene silencing by rna

GO:0031047

Any process in which RNA molecules inactivate expression of target genes.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "gene silencing by rna"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "gene silencing by rna" (in gray)

Name	Description	Probability	Func Analog Organism
khdrbs1a	KH domain containing, RNA binding, signal transduction associated 1a	0.398
ef1a	elongation factor 1-alpha	0.161
srsf2	serine/arginine-rich splicing factor 2	0.148
pwp2h	PWP2 periodic tryptophan protein homolog (yeast)	0.144
actl6a	actin-like 6A	0.126
gro2	groucho 2	0.111
hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.111
zgc:77052	zgc:77052	0.090
smarce1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	0.085
calm3b	calmodulin 3b (phosphorylase kinase, delta)	0.074
ints6	integrator complex subunit 6	0.073
cdk8	cyclin-dependent kinase 8	0.071
hspd1	heat shock 60kD protein 1 (chaperonin)	0.068
tbx1	T-box 1	0.065
usp10	ubiquitin specific peptidase 10	0.063
vcp	valosin containing protein	0.060
acvr1b	activin A receptor, type IB	0.060
LOC570775	protein argonaute-1-like	0.059
fgf20a	fibroblast growth factor 20a	0.051
cyc1	cytochrome c-1	0.047
extl3	exostoses (multiple)-like 3	0.044
nanos3	nanos homolog 3	0.043
hnrnpl2	heterogeneous nuclear ribonucleoprotein L2	0.041
e2f5	E2F transcription factor 5	0.041
og9x	OG9 homeobox gene	0.040
sf1	splicing factor 1	0.040
tp53	tumor protein p53	0.040
nono	non-POU domain containing, octamer-binding	0.039
sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.039
hspa9	heat shock protein 9	0.039
drg1	developmentally regulated GTP binding protein 1	0.037
nin	ninein (GSK3B interacting protein)	0.037
acin1a	apoptotic chromatin condensation inducer 1a	0.036
tcf7	transcription factor 7 (T-cell specific, HMG-box)	0.036	Worm
ssrp1a	structure specific recognition protein 1a	0.036
si:ch211-59d15.5	si:ch211-59d15.5	0.035
pes	pescadillo	0.034
rpe	ribulose-5-phosphate-3-epimerase	0.033
abce1	ATP-binding cassette, sub-family E (OABP), member 1	0.033
ddx42	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	0.033
tgfbi	transforming growth factor, beta-induced	0.032
uba1	ubiquitin-like modifier activating enzyme 1	0.032
prkci	protein kinase C, iota	0.032
slc9a3.2	solute carrier family 9 (sodium/hydrogen exchanger), member 3.2	0.032
ndr1	nodal-related 1	0.031
pcbp2	poly(rC) binding protein 2	0.031
snrpc	small nuclear ribonucleoprotein polypeptide C	0.031
rrp12	ribosomal RNA processing 12 homolog (S. cerevisiae)	0.030
zgc:193933	zgc:193933	0.030
ddx3	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3	0.030
wu:fb63c04	wu:fb63c04	0.030
sulf1	sulfatase 1	0.030
ewsr1b	Ewing sarcoma breakpoint region 1b	0.030
zgc:101724	zgc:101724	0.029
supt6h	suppressor of Ty 6 homolog	0.029
bzw1a	basic leucine zipper and W2 domains 1a	0.029
eif4a1a	eukaryotic translation initiation factor 4A, isoform 1A	0.028
gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	0.028
dctn1a	dynactin 1a	0.028
tmem48	transmembrane protein 48	0.027
si:ch211-255l12.1	si:ch211-255l12.1	0.027
prpf8	pre-mRNA processing factor 8	0.027
diexf	digestive organ expansion factor homolog	0.027
ext1b	exostoses (multiple) 1b	0.026
zgc:158399	zgc:158399	0.026
atp6v1e1b	ATPase, H+ transporting, lysosomal, V1 subunit E isoform 1b	0.026
scaf11	SR-related CTD-associated factor 11	0.026
mkks	McKusick-Kaufman syndrome	0.025
cct5	chaperonin containing TCP1, subunit 5 (epsilon)	0.025
srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.024	Human Mouse
ptges	prostaglandin E synthase	0.024
dlat	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	0.024
sart1	squamous cell carcinoma antigen recognised by T cells	0.024
atp1b3b	ATPase, Na+/K+ transporting, beta 3b polypeptide	0.024
ocrl	oculocerebrorenal syndrome of Lowe	0.024
ccm2	cerebral cavernous malformation 2	0.023
bon	bonnie and clyde	0.023
lrpprc	leucine-rich PPR-motif containing	0.023
rnps1	RNA binding protein S1, serine-rich domain	0.023
mxtx2	mix-type homeobox gene 2	0.022
znf259	zinc finger protein 259	0.022
si:ch211-114c12.2	si:ch211-114c12.2	0.022
eftud2	elongation factor Tu GTP binding domain containing 2	0.022
psmc3	proteasome (prosome, macropain) 26S subunit, ATPase, 3	0.022
bactin2	bactin2	0.022
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.022	Worm
satb2	SATB homeobox 2	0.022
raver1	ribonucleoprotein, PTB-binding 1	0.022
gro1	groucho 1	0.022
atp1a1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	0.022
lppr3b	lipid phosphate phosphatase-related protein type 3b	0.021
sh3bp5	SH3-domain binding protein 5 (BTK-associated)	0.021
tia1l	cytotoxic granule-associated RNA binding protein 1, like	0.021
zgc:110847	zgc:110847	0.021
rcc2	regulator of chromosome condensation 2	0.021
srsf4	serine/arginine-rich splicing factor 4	0.021
ankrd13c	ankyrin repeat domain 13C	0.021
cdv3	carnitine deficiency-associated gene expressed in ventricle 3	0.021
si:dkey-25e12.5	si:dkey-25e12.5	0.021
safb	scaffold attachment factor B	0.021
celsr1b	cadherin EGF LAG seven-pass G-type receptor 1b	0.021
sf3b1	splicing factor 3b, subunit 1	0.020
sec61al1	Sec61 alpha like 1	0.020
cad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	0.020
csnk1a1	casein kinase 1, alpha 1	0.020
sfrs3b	splicing factor, arginine/serine-rich 3b	0.019
polr2d	polymerase (RNA) II (DNA directed) polypeptide D	0.019
ddx18	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.019
dlst	dihydrolipoamide S-succinyltransferase	0.019
casc3	cancer susceptibility candidate 3	0.019
psmd13	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	0.019
psmb3	proteasome (prosome, macropain) subunit, beta type, 3	0.019
ppm1g	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	0.019
exosc4	exosome component 4	0.019
zgc:110682	zgc:110682	0.019
mapk3	mitogen-activated protein kinase 3	0.018
hnrnpa0l	heterogeneous nuclear ribonucleoprotein A0, like	0.018
sephs1	selenophosphate synthetase 1	0.018
cdc42l	cell division cycle 42, like	0.018
zgc:152873	zgc:152873	0.018
ptena	phosphatase and tensin homolog A	0.018
usp5	ubiquitin specific protease 5	0.018
fbn2b	fibrillin 2b	0.018
ncl	nucleolin	0.018
sf3b5	splicing factor 3b, subunit 5	0.018
uqcrc1	ubiquinol-cytochrome c reductase core protein I	0.018
slc4a1b	solute carrier family 4, anion exchanger, member 1b	0.018
eif6	eukaryotic translation initiation factor 6	0.018
slc25a32b	solute carrier family 25, member 32b	0.018
faf1	Fas associated factor 1	0.017
supt5h	suppressor of Ty 5 homolog (S. cerevisiae)	0.017
mxtx1	mix-type homeobox gene 1	0.017
rbb4	retinoblastoma binding protein 4	0.017	Worm
tardbpl	TAR DNA binding protein, like	0.017
mapre1	microtubule-associated protein, RP/EB family, member 1	0.017
ppp2r1a	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.017	Worm
pole3	polymerase (DNA directed), epsilon 3 (p17 subunit)	0.017
cand1	cullin-associated and neddylation-dissociated 1	0.017
zgc:55461	zgc:55461	0.017
abcf2	ATP-binding cassette, sub-family F (GCN20), member 2	0.017
zff9	zinc finger protein 9	0.017
hist1h4l	histone 1, H4, like	0.017
hells	helicase, lymphoid-specific	0.017
dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16	0.017
zgc:113210	zgc:113210	0.016
spry4	sprouty (Drosophila) homolog 4	0.016
sec13	SEC13 homolog (S. cerevisiae)	0.016
ubtf	upstream binding transcription factor, RNA polymerase I	0.016
pvalb8	parvalbumin 8	0.016
ppp4cb	protein phosphatase 4 (formerly X), catalytic subunit b	0.016
stau2	staufen, RNA binding protein, homolog 2 (Drosophila)	0.016	Worm
psmc1a	proteasome (prosome, macropain) 26S subunit, ATPase, 1a	0.016
cnot1	CCR4-NOT transcription complex, subunit 1	0.016
buc	bucky ball	0.016
mettl11a	methyltransferase like 11A	0.016
zfr	zinc finger RNA binding protein	0.016
zgc:110046	zgc:110046	0.016
ndufa10	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10	0.016
h1m	linker histone H1M	0.016
ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.015
chtopa	chromatin target of PRMT1a	0.015
prpf4b	PRP4 pre-mRNA processing factor 4 homolog B	0.015
nolc1	nucleolar and coiled-body phosphoprotein 1	0.015
sdha	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	0.015
ilf2	interleukin enhancer binding factor 2	0.015
morc2	MORC family CW-type zinc finger 2	0.015
hsp90ab1	heat shock protein 90, alpha (cytosolic), class B member 1	0.015
ss18	synovial sarcoma translocation, chromosome 18 (H. sapiens)	0.015
etfa	electron-transfer-flavoprotein, alpha polypeptide	0.015
sox32	SRY-box containing gene 32	0.015
slit1a	slit homolog 1a (Drosophila)	0.015
wdr43	WD repeat domain 43	0.015
slc43a1a	solute carrier family 43, member 1a	0.015
zgc:136871	zgc:136871	0.015
nphs1l	nephrosis 1, congenital, Finnish type (nephrin)-like	0.015
egfl7	EGF-like-domain, multiple 7	0.015
hspe1	heat shock 10 protein 1 (chaperonin 10)	0.015
sec31a	sec31 homolog A (S. cerevisiae)	0.014
eif4e1c	eukaryotic translation initiation factor 4E family member 1c	0.014
tcea1	transcription elongation factor A (SII), 1	0.014
opa1	optic atrophy 1 (human)	0.014
her15.2	hairy and enhancer of split-related 15.2	0.014
gnb1a	guanine nucleotide binding protein (G protein), beta polypeptide 1a	0.014
LOC572325	dymeclin-like	0.014
tgfb3	transforming growth factor, beta 3	0.014
api5	apoptosis inhibitor 5	0.014
heatr3	HEAT repeat containing 3	0.014
hnrnpu	heterogeneous nuclear ribonucleoprotein U	0.014
ecd	ecdysoneless homolog (Drosophila)	0.014
slmo2	slowmo homolog 2 (Drosophila)	0.014
rbm39a	RNA binding motif protein 39a	0.014
snf8	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	0.014
zgc:91910	zgc:91910	0.014
grwd1	glutamate-rich WD repeat containing 1	0.014
zgc:66242	zgc:66242	0.014
dnd	dead end	0.014
naa50	N(alpha)-acetyltransferase 50, NatE catalytic subunit	0.014
eif2c4	eukaryotic translation initiation factor 2C, 4	0.014
tgfb2	transforming growth factor, beta 2	0.014
rpz	rapunzel	0.013
olig4	oligodendrocyte transcription factor 4	0.013
cirh1a	cirrhosis, autosomal recessive 1A (cirhin)	0.013
wnt5a	wingless-type MMTV integration site family, member 5a	0.013
tbpl2	TATA box binding protein like 2	0.013
actr1	ARP1 actin-related protein 1, centractin (yeast)	0.013
wu:fb71f10	wu:fb71f10	0.013
ccnb1	cyclin B1	0.013
elavl1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	0.013
psmc2	proteasome (prosome, macropain) 26S subunit, ATPase 2	0.013
oaz2b	ornithine decarboxylase antizyme 2b	0.013
abcb7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	0.013
birc5b	baculoviral IAP repeat-containing 5B	0.013
sf3b14	splicing factor 3B	0.013
sc:d812	sc:d812	0.013
ptmab	prothymosin, alpha b	0.013
mrpl15	mitochondrial ribosomal protein L15	0.013
ppp1r12a	protein phosphatase 1, regulatory (inhibitor) subunit 12A	0.013
ezh2	enhancer of zeste homolog 2 (Drosophila)	0.013
phb	prohibitin	0.013
fzd8b	frizzled homolog 8b	0.013
kpna2	karyopherin alpha 2 (RAG cohort 1, importin alpha 1)	0.013
prnprs3	prion protein, related sequence 3	0.013
LOC555163	myelin protein zero-like protein 1-like	0.013
csnk1g2a	casein kinase 1, gamma 2a	0.013
eif1b	eukaryotic translation initiation factor 1B	0.013
rtf1	Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.013
anp32e	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.013
ctbp1	C-terminal binding protein 1	0.012
flr	fleer	0.012
slit1b	slit homolog 1b (Drosophila)	0.012
rpl7l1	ribosomal protein L7-like 1	0.012
ppp1cbl	protein phosphatase 1, catalytic subunit, beta isoform, like	0.012
celsr3	cadherin, EGF LAG seven-pass G-type receptor 3	0.012
zgc:163064	zgc:163064	0.012
zgc:113312	zgc:113312	0.012
si:dkeyp-7c9.1	si:dkeyp-7c9.1	0.012
ran	ras-related nuclear protein	0.012
eef2b	eukaryotic translation elongation factor 2b	0.012
rars	arginyl-tRNA synthetase	0.012
paf1	paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	0.012
cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.012
anxa1b	annexin A1b	0.012
cep70	centrosomal protein 70	0.012
igfbp2b	insulin-like growth factor binding protein 2b	0.012
magoh	mago-nashi homolog, proliferation-associated (Drosophila)	0.012
LOC555504	novel protocadherin protein	0.012
clstn2	calsyntenin 2	0.012
ssbp3b	single stranded DNA binding protein 3b	0.012
psmb9a	proteasome (prosome, macropain) subunit, beta type, 9a	0.012
k23	k23 gene	0.012
nf1b	neurofibromin 1b	0.012
hnrpr	heterogeneous nuclear ribonucleoprotein R	0.011
upf1	upf1 regulator of nonsense transcripts homolog (yeast)	0.011	Worm
barx1	BarH-like homeobox 1	0.011
npepl1	aminopeptidase-like 1	0.011
vars	valyl-tRNA synthetase	0.011
psmd12	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	0.011
slc12a10.2	solute carrier family 12 (sodium/potassium/chloride transporters), member 10.2	0.011
prkd1	protein kinase D1	0.011
appl2	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	0.011
eif4e1b	eukaryotic translation initiation factor 4e 1b	0.011
fanca	Fanconi anemia, complementation group A	0.011
nop58	NOP58 ribonucleoprotein homolog (yeast)	0.011
zgc:111961	zgc:111961	0.011
dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	0.011
ywhabb	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide b	0.011
faf2	Fas associated factor family member 2	0.011
ssrp1b	structure specific recognition protein 1b	0.011
gnl2	guanine nucleotide binding protein-like 2 (nucleolar)	0.011
ca15a	carbonic anhydrase XV a	0.011
im:7141335	im:7141335	0.011
psma8	proteasome (prosome, macropain) subunit, alpha type, 8	0.011
rpa3	replication protein A3	0.011
amt	aminomethyltransferase	0.011
rbm22	RNA binding motif protein 22	0.011
ap2a1	adaptor-related protein complex 2, alpha 1 subunit	0.011
thy1	Thy-1 cell surface antigen	0.011
mxa	myxovirus (influenza) resistance A	0.011
ythdf1	YTH domain family, member 1	0.011
cbx5	chromobox homolog 5 (HP1 alpha homolog, Drosophila)	0.011
syncripl	synaptotagmin binding, cytoplasmic RNA interacting protein, like	0.011
wdr46	WD repeat domain 46	0.011
tardbp	TAR DNA binding protein	0.011
fbxw7	F-box and WD repeat domain containing 7	0.011
nkapl	NFKB activating protein-like	0.011
nos2b	nitric oxide synthase 2b, inducible	0.011
ehd1	EH-domain containing 1	0.011
atic	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	0.011
igf3	insulin-like growth factor 3	0.011
rbmx	RNA binding motif protein, X-linked	0.011
h3f3d	H3 histone, family 3D	0.011
LOC100359374	BCL-WAV	0.011
plag1	pleiomorphic adenoma gene 1	0.011
tufm	Tu translation elongation factor, mitochondrial	0.011
myo6b	myosin VIb	0.011
dcaf7	ddb1 and cul4 associated factor 7	0.011
tcp1	t-complex polypeptide 1	0.011
odc1	ornithine decarboxylase 1	0.011
etfdh	electron-transferring-flavoprotein dehydrogenase	0.010
dpf2l	D4, zinc and double PHD fingers family 2, like	0.010
cdk7	cyclin-dependent kinase 7	0.010
rpe65b	retinal pigment epithelium-specific protein 65b	0.010
smarcal1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	0.010
im:7139388	im:7139388	0.010
sid4	secreted immunoglobulin domain 4	0.010
cnot6	CCR4-NOT transcription complex, subunit 6	0.010
gtf2a1	general transcription factor IIA, 1	0.010
zgc:56304	zgc:56304	0.010
atoh7	atonal homolog 7	0.010
mta3	metastasis associated family, member 3	0.010
zgc:55886	zgc:55886	0.010
ddx5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.010	Fly
ube2g1b	ubiquitin-conjugating enzyme E2G 1b (UBC7 homolog, yeast)	0.010
cul1a	cullin 1a	0.010
wu:fb39a06	wu:fb39a06	0.010
eif2s3	eukaryotic translation initiation factor 2, subunit 3 gamma	0.010
gps1	G protein pathway suppressor 1	0.010
hspa4a	heat shock protein 4a	0.010