IMP

Process View

Mus musculus

2 genes annotated in mouse

Multi-species View

spinal cord ventral commissure morphogenesis

GO:0021965

The process in which the anatomical structures of the spinal cord ventral commissure are generated and organized.

Loading network...

In addition to gene-name show these genes:

Known genes in the process in mouse Include functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "spinal cord ventral commissure morphogenesis"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "spinal cord ventral commissure morphogenesis" (in gray)

Name	Description	Probability	Func Analog Organism
Gli3	GLI-Kruppel family member GLI3	0.999	Mouse
Gli2	GLI-Kruppel family member GLI2	0.975
Shh	sonic hedgehog	0.974
Fgfr2	fibroblast growth factor receptor 2	0.733
Foxc1	forkhead box C1	0.472
Sox9	SRY-box containing gene 9	0.431
Unc5c	unc-5 homolog C (C. elegans)	0.427
Ror2	receptor tyrosine kinase-like orphan receptor 2	0.425
Ptch1	patched homolog 1	0.419
Bmp7	bone morphogenetic protein 7	0.363
Fgf10	fibroblast growth factor 10	0.356
Bmp4	bone morphogenetic protein 4	0.280
Sox11	SRY-box containing gene 11	0.253
Twist2	twist homolog 2 (Drosophila)	0.250
Ephb2	Eph receptor B2	0.249
Msx2	homeobox, msh-like 2	0.244
Smo	smoothened homolog (Drosophila)	0.218
Fgfr1	fibroblast growth factor receptor 1	0.214
Lmx1b	LIM homeobox transcription factor 1 beta	0.176
Foxc2	forkhead box C2	0.169
Col2a1	collagen, type II, alpha 1	0.163
Efna4	ephrin A4	0.160
Pitx2	paired-like homeodomain transcription factor 2	0.158
Vangl2	vang-like 2 (van gogh, Drosophila)	0.156
Obsl1	obscurin-like 1	0.143
Pax3	paired box gene 3	0.140
Msx1	homeobox, msh-like 1	0.138
Tgfb2	transforming growth factor, beta 2	0.134
Efna2	ephrin A2	0.124
Otx2	orthodenticle homolog 2 (Drosophila)	0.122
Pax6	paired box gene 6	0.119
Meox2	mesenchyme homeobox 2	0.113
Lmx1a	LIM homeobox transcription factor 1 alpha	0.113
Fbn2	fibrillin 2	0.113
Fgfr3	fibroblast growth factor receptor 3	0.106
Hspg2	perlecan (heparan sulfate proteoglycan 2)	0.103
Notch3	Notch gene homolog 3 (Drosophila)	0.100
Nog	noggin	0.098
Ebf3	early B-cell factor 3	0.096
En1	engrailed 1	0.093
Sox2	SRY-box containing gene 2	0.091
Fgf8	fibroblast growth factor 8	0.089
Wnt5a	wingless-related MMTV integration site 5A	0.086
Hoxa11	homeobox A11	0.085
Ptk7	PTK7 protein tyrosine kinase 7	0.082
Pax2	paired box gene 2	0.082
Tead3	TEA domain family member 3	0.076
Six5	sine oculis-related homeobox 5 homolog (Drosophila)	0.074
Capn6	calpain 6	0.069
Pcsk5	proprotein convertase subtilisin/kexin type 5	0.068
Gdnf	glial cell line derived neurotrophic factor	0.067
Sfrp2	secreted frizzled-related protein 2	0.067
Fzd2	frizzled homolog 2 (Drosophila)	0.064
Pbx1	pre B-cell leukemia transcription factor 1	0.064
Fgf9	fibroblast growth factor 9	0.061
Col11a1	collagen, type XI, alpha 1	0.059
Wnt6	wingless-related MMTV integration site 6	0.058
Auts2	autism susceptibility candidate 2	0.058
Efs	embryonal Fyn-associated substrate	0.057
Rarb	retinoic acid receptor, beta	0.056
Six1	sine oculis-related homeobox 1 homolog (Drosophila)	0.055
Hoxd13	homeobox D13	0.055
Odz4	odd Oz/ten-m homolog 4 (Drosophila)	0.055
Insm1	insulinoma-associated 1	0.054
Zic1	zinc finger protein of the cerebellum 1	0.054
Wt1	Wilms tumor 1 homolog	0.053
Rarg	retinoic acid receptor, gamma	0.052
Gas1	growth arrest specific 1	0.052
Ace	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	0.051
Tcfap2a	transcription factor AP-2, alpha	0.050
Tcfap2c	transcription factor AP-2, gamma	0.050
Arvcf	armadillo repeat gene deleted in velo-cardio-facial syndrome	0.048
Lhx1	LIM homeobox protein 1	0.048
Prrx1	paired related homeobox 1	0.048
Ntn1	netrin 1	0.048
Hoxd3	homeobox D3	0.046
Gli1	GLI-Kruppel family member GLI1	0.046	Mouse
Zic2	zinc finger protein of the cerebellum 2	0.044
Sema5b	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	0.043
Prrx2	paired related homeobox 2	0.043
Sall3	sal-like 3 (Drosophila)	0.043
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	0.042
Pthlh	parathyroid hormone-like peptide	0.042
Ascl1	achaete-scute complex homolog 1 (Drosophila)	0.039
Neurog3	neurogenin 3	0.038
Emx2	empty spiracles homolog 2 (Drosophila)	0.038
Mycn	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	0.037
St8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	0.036
Hoxc8	homeobox C8	0.036
Tbx2	T-box 2	0.035
Disp1	dispatched homolog 1 (Drosophila)	0.035
Ihh	Indian hedgehog	0.034
Lrfn1	leucine rich repeat and fibronectin type III domain containing 1	0.034
Cdon	cell adhesion molecule-related/down-regulated by oncogenes	0.033
Nrk	Nik related kinase	0.033
Grb10	growth factor receptor bound protein 10	0.033
Bmper	BMP-binding endothelial regulator	0.032
Cbln1	cerebellin 1 precursor protein	0.031
En2	engrailed 2	0.031
Zeb1	zinc finger E-box binding homeobox 1	0.031
Hoxa13	homeobox A13	0.030
Meis2	Meis homeobox 2	0.030
Foxd2	forkhead box D2	0.029
Efnb1	ephrin B1	0.029
Sox3	SRY-box containing gene 3	0.029
Wnt3a	wingless-related MMTV integration site 3A	0.029
Mark1	MAP/microtubule affinity-regulating kinase 1	0.028
Hoxa5	homeobox A5	0.027
Pdgfra	platelet derived growth factor receptor, alpha polypeptide	0.027
Ptch2	patched homolog 2	0.027
Zfpm2	zinc finger protein, multitype 2	0.027
Cacng4	calcium channel, voltage-dependent, gamma subunit 4	0.026
Fgf18	fibroblast growth factor 18	0.026
Dlk1	delta-like 1 homolog (Drosophila)	0.025
Foxn4	forkhead box N4	0.025
Tgif2	TGFB-induced factor homeobox 2	0.025
Tcf15	transcription factor 15	0.025
Foxp2	forkhead box P2	0.024
Igdcc3	immunoglobulin superfamily, DCC subclass, member 3	0.024	Mouse
Slit2	slit homolog 2 (Drosophila)	0.024
Tead2	TEA domain family member 2	0.023
Kcnd3	potassium voltage-gated channel, Shal-related family, member 3	0.023
Trp63	transformation related protein 63	0.023
Emid2	EMI domain containing 2	0.023
Gpc3	glypican 3	0.023
Ier5l	immediate early response 5-like	0.023
Hoxd9	homeobox D9	0.022
Hoxa10	homeobox A10	0.022
Acan	aggrecan	0.022
Zfp651	zinc finger protein 651	0.022
Bnc1	basonuclin 1	0.021
Chrd	chordin	0.021
Otx1	orthodenticle homolog 1 (Drosophila)	0.021
Hoxd11	homeobox D11	0.021
Irs1	insulin receptor substrate 1	0.021
Lhx9	LIM homeobox protein 9	0.021
Nhlh1	nescient helix loop helix 1	0.021
Alx4	aristaless-like homeobox 4	0.020
Mrc2	mannose receptor, C type 2	0.020
Hmx1	H6 homeobox 1	0.020
Kcnk2	potassium channel, subfamily K, member 2	0.020
Apcdd1	adenomatosis polyposis coli down-regulated 1	0.020
Vstm2b	V-set and transmembrane domain containing 2B	0.020
Dll3	delta-like 3 (Drosophila)	0.019
Ren1	renin 1 structural	0.019
T	brachyury	0.019
Gpr153	G protein-coupled receptor 153	0.019
Nfib	nuclear factor I/B	0.019
Msi1	Musashi homolog 1(Drosophila)	0.019
Nynrin	NYN domain and retroviral integrase containing	0.019
Bhlhe22	basic helix-loop-helix family, member e22	0.019
Mmp16	matrix metallopeptidase 16	0.018
Nkx1-2	NK1 transcription factor related, locus 2 (Drosophila)	0.018
Barx1	BarH-like homeobox 1	0.018
Gbx2	gastrulation brain homeobox 2	0.018
Six2	sine oculis-related homeobox 2 homolog (Drosophila)	0.018
Plxna3	plexin A3	0.018
Tlx3	T-cell leukemia, homeobox 3	0.018
Tcf7l1	transcription factor 7-like 1 (T-cell specific, HMG box)	0.018
Pax7	paired box gene 7	0.018
Cachd1	cache domain containing 1	0.018
Pitx3	paired-like homeodomain transcription factor 3	0.018
Pkdcc	protein kinase domain containing, cytoplasmic	0.018
Wnt2b	wingless related MMTV integration site 2b	0.018
Cdh4	cadherin 4	0.018
Eya1	eyes absent 1 homolog (Drosophila)	0.018
Nkx2-9	NK2 transcription factor related, locus 9 (Drosophila)	0.017
Efnb2	ephrin B2	0.017
Nr2f1	nuclear receptor subfamily 2, group F, member 1	0.017
Lrp2	low density lipoprotein receptor-related protein 2	0.017
Dlx5	distal-less homeobox 5	0.017
Fgf15	fibroblast growth factor 15	0.017
Mn1	meningioma 1	0.017
Col13a1	collagen, type XIII, alpha 1	0.017
Pitx1	paired-like homeodomain transcription factor 1	0.017
Hoxc5	homeobox C5	0.017
Hoxb3	homeobox B3	0.017
Dkk1	dickkopf homolog 1 (Xenopus laevis)	0.017
Fgf4	fibroblast growth factor 4	0.017
Ebf4	early B-cell factor 4	0.017
Gfra3	glial cell line derived neurotrophic factor family receptor alpha 3	0.017
Hand1	heart and neural crest derivatives expressed transcript 1	0.017
Twist1	twist homolog 1 (Drosophila)	0.017
Dpysl4	dihydropyrimidinase-like 4	0.016
Ephb3	Eph receptor B3	0.016
Ror1	receptor tyrosine kinase-like orphan receptor 1	0.016
Hoxd10	homeobox D10	0.016
Lhx5	LIM homeobox protein 5	0.016
Bcl2	B-cell leukemia/lymphoma 2	0.016
Fat4	FAT tumor suppressor homolog 4 (Drosophila)	0.016
Sall4	sal-like 4 (Drosophila)	0.016
Cacna1g	calcium channel, voltage-dependent, T type, alpha 1G subunit	0.016
Htr1b	5-hydroxytryptamine (serotonin) receptor 1B	0.016
Lama5	laminin, alpha 5	0.016
Sema5a	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	0.015
Fzd8	frizzled homolog 8 (Drosophila)	0.015
Ret	ret proto-oncogene	0.015
Fam19a5	family with sequence similarity 19, member A5	0.015
Pou5f1	POU domain, class 5, transcription factor 1	0.015
Arhgef25	Rho guanine nucleotide exchange factor (GEF) 25	0.015
Grik3	glutamate receptor, ionotropic, kainate 3	0.015
Elavl2	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	0.015
Rspo2	R-spondin 2 homolog (Xenopus laevis)	0.015
Emx1	empty spiracles homolog 1 (Drosophila)	0.015
Fgf17	fibroblast growth factor 17	0.015
Npr3	natriuretic peptide receptor 3	0.015
Sall1	sal-like 1 (Drosophila)	0.015
Igf2bp1	insulin-like growth factor 2 mRNA binding protein 1	0.015
Cldn6	claudin 6	0.015
Jag1	jagged 1	0.015
Ybx2	Y box protein 2	0.014
Sfrp1	secreted frizzled-related protein 1	0.014
Rimklb	ribosomal modification protein rimK-like family member B	0.014
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	0.014
Efna5	ephrin A5	0.014
Efnb3	ephrin B3	0.014
Col16a1	collagen, type XVI, alpha 1	0.014
Mfap4	microfibrillar-associated protein 4	0.014
Tbx15	T-box 15	0.014
Zbtb7c	zinc finger and BTB domain containing 7C	0.014
Sema6a	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	0.014
Zfp503	zinc finger protein 503	0.014
Mks1	Meckel syndrome, type 1	0.013
Neurog2	neurogenin 2	0.013
Plac1	placental specific protein 1	0.013
Sim1	single-minded homolog 1 (Drosophila)	0.013
Rax	retina and anterior neural fold homeobox	0.013
Hoxc6	homeobox C6	0.013
Scube1	signal peptide, CUB domain, EGF-like 1	0.013
Epha4	Eph receptor A4	0.013
Zic3	zinc finger protein of the cerebellum 3	0.013
Robo1	roundabout homolog 1 (Drosophila)	0.013
Folr1	folate receptor 1 (adult)	0.013
Cacna2d1	calcium channel, voltage-dependent, alpha2/delta subunit 1	0.013
Lhx3	LIM homeobox protein 3	0.013
Hoxd4	homeobox D4	0.013
Gpr27	G protein-coupled receptor 27	0.013
Sim2	single-minded homolog 2 (Drosophila)	0.013
Sspo	SCO-spondin	0.013
Syt9	synaptotagmin IX	0.013
Wnt1	wingless-related MMTV integration site 1	0.013
Cdh6	cadherin 6	0.013
Col22a1	collagen, type XXII, alpha 1	0.013
Hoxb6	homeobox B6	0.013
Sdk2	sidekick homolog 2 (chicken)	0.013
Lhb	luteinizing hormone beta	0.013
Mrgprf	MAS-related GPR, member F	0.013
Cd248	CD248 antigen, endosialin	0.013
Nr5a1	nuclear receptor subfamily 5, group A, member 1	0.013
Foxp1	forkhead box P1	0.012
Alx1	ALX homeobox 1	0.012
Tbx3	T-box 3	0.012
Zfhx4	zinc finger homeodomain 4	0.012
Igf1r	insulin-like growth factor I receptor	0.012
Ncam1	neural cell adhesion molecule 1	0.012
Pou3f3	POU domain, class 3, transcription factor 3	0.012
Adcy2	adenylate cyclase 2	0.012
Hoxb1	homeobox B1	0.012
Rprm	reprimo, TP53 dependent G2 arrest mediator candidate	0.012
Wnt9a	wingless-type MMTV integration site 9A	0.012
Phldb1	pleckstrin homology-like domain, family B, member 1	0.012
Atoh7	atonal homolog 7 (Drosophila)	0.012
Nrtn	neurturin	0.012
Nkx2-2	NK2 transcription factor related, locus 2 (Drosophila)	0.012
Foxf2	forkhead box F2	0.012
Col9a1	collagen, type IX, alpha 1	0.012
Pla2g10	phospholipase A2, group X	0.012
Eln	elastin	0.012
Sdk1	sidekick homolog 1 (chicken)	0.012
Neurog1	neurogenin 1	0.012
Gpr50	G-protein-coupled receptor 50	0.012
Slc16a2	solute carrier family 16 (monocarboxylic acid transporters), member 2	0.011
Syt7	synaptotagmin VII	0.011
Bcam	basal cell adhesion molecule	0.011
Wnt9b	wingless-type MMTV integration site 9B	0.011
H1fx	H1 histone family, member X	0.011
Lama1	laminin, alpha 1	0.011
Arhgef40	Rho guanine nucleotide exchange factor (GEF) 40	0.011
Itga3	integrin alpha 3	0.011
Tacr2	tachykinin receptor 2	0.011
Hes5	hairy and enhancer of split 5 (Drosophila)	0.011
Hoxa1	homeobox A1	0.011
Myo10	myosin X	0.011
Dkk2	dickkopf homolog 2 (Xenopus laevis)	0.011
Foxd1	forkhead box D1	0.011
Lrrc56	leucine rich repeat containing 56	0.011
Foxb1	forkhead box B1	0.011
Col5a1	collagen, type V, alpha 1	0.011
Cux2	cut-like homeobox 2	0.011
Kcnd1	potassium voltage-gated channel, Shal-related family, member 1	0.011
Rfx2	regulatory factor X, 2 (influences HLA class II expression)	0.011
Socs1	suppressor of cytokine signaling 1	0.011
Etv4	ets variant gene 4 (E1A enhancer binding protein, E1AF)	0.011
Odf3	outer dense fiber of sperm tails 3	0.011
Isl1	ISL1 transcription factor, LIM/homeodomain	0.011
Eya4	eyes absent 4 homolog (Drosophila)	0.011
Vax2	ventral anterior homeobox containing gene 2	0.011
Dact1	dapper homolog 1, antagonist of beta-catenin (xenopus)	0.011
Wnt4	wingless-related MMTV integration site 4	0.011
Runx1t1	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	0.011
Col4a5	collagen, type IV, alpha 5	0.011
5730559C18Rik	RIKEN cDNA 5730559C18 gene	0.011
Gdf11	growth differentiation factor 11	0.011
Dab1	disabled homolog 1 (Drosophila)	0.011
Col4a3	collagen, type IV, alpha 3	0.011
Tdrd1	tudor domain containing 1	0.011
Enah	enabled homolog (Drosophila)	0.010
Ctnnb1	catenin (cadherin associated protein), beta 1	0.010
Six4	sine oculis-related homeobox 4 homolog (Drosophila)	0.010
Foxe3	forkhead box E3	0.010
Rara	retinoic acid receptor, alpha	0.010
Vsx2	visual system homeobox 2	0.010
Hsd11b2	hydroxysteroid 11-beta dehydrogenase 2	0.010
Ddr2	discoidin domain receptor family, member 2	0.010
Sema3b	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	0.010
Lhx4	LIM homeobox protein 4	0.010
Ubxn10	UBX domain protein 10	0.010
Rspo1	R-spondin homolog (Xenopus laevis)	0.010
Rcor2	REST corepressor 2	0.010