IMP

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Danio rerio

1 genes annotated in zebrafish

rhodopsin mediated signaling pathway

The series of molecular signals generated as a consequence of excitation of rhodopsin by a photon and the events that convert the absorbed photons into a cellular response.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "rhodopsin mediated signaling pathway"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "rhodopsin mediated signaling pathway" (in gray)

Name	Description	Probability	Func Analog Organism
opn1sw1	opsin 1 (cone pigments), short-wave-sensitive 1	0.933	Zebrafish
gc3	guanylyl cyclase 3	0.895
opn1lw1	opsin 1 (cone pigments), long-wave-sensitive, 1	0.854	Zebrafish
opn1sw2	opsin 1 (cone pigments), short-wave-sensitive 2	0.840	Zebrafish
rho	rhodopsin	0.819	Zebrafish Rat
opn4l	opsin 4, like	0.791
opn4a	opsin 4a (melanopsin)	0.576	Zebrafish Mouse Fly
gnat1	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1	0.572
opn4x1	opsin 4x1	0.505	Zebrafish
gnat2	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2	0.348
guca1c	guanylate cyclase activator 1C	0.316
gucy2f	guanylate cyclase 2F, retinal	0.314
scn1lab	sodium channel, voltage-gated, type I like, alpha b	0.300
LOC100331502	melanopsin-B-like	0.287
arr3a	arrestin 3a, retinal (X-arrestin)	0.259	Fly
opn1mw1	opsin 1 (cone pigments), medium-wave-sensitive, 1	0.247	Zebrafish
chat	choline acetyltransferase	0.192
lin7a	lin-7 homolog A (C. elegans)	0.186
rx1	retinal homeobox gene 1	0.134
rcv1	recoverin	0.134
LOC568691	opsin-3-like	0.128
gc2	guanylyl cyclase 2	0.114
aanat2	arylalkylamine N-acetyltransferase	0.092
rbp4l	retinol binding protein 4, like	0.087
arf1	ADP-ribosylation factor 1	0.085
zgc:77752	zgc:77752	0.079
pi4kb	phosphatidylinositol 4-kinase, catalytic, beta	0.075
cadm2b	cell adhesion molecule 2b	0.071
zgc:56548	zgc:56548	0.071
zgc:73336	zgc:73336	0.070
crb3a	crumbs homolog 3a	0.067
grk7a	G-protein-coupled receptor kinase 7a	0.066
nbl1	neuroblastoma, suppression of tumorigenicity 1	0.062
cacnb2b	calcium channel, voltage-dependent, beta 2b	0.057
nfe2l1	nuclear factor, erythroid derived 2,-like 1	0.056
irbp	interphotoreceptor retinoid-binding protein	0.055
celsr3	cadherin, EGF LAG seven-pass G-type receptor 3	0.055
guca1d	guanylate cyclase activator 1d	0.053
parapinopsinb	parapinopsin b	0.052
htr1aa	5-hydroxytryptamine (serotonin) receptor 1A a	0.052
gngt1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	0.049
pde6h	phosphodiesterase 6H, cGMP-specific, cone, gamma	0.049
crx	cone-rod homeobox	0.047
rdh5	retinol dehydrogenase 5 (11-cis/9-cis)	0.046
rs1	retinoschisis (X-linked, juvenile) 1	0.043	Mouse
slc25a25a	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25a	0.038
nrl	neural retina leucine zipper	0.033
vamp2	vesicle-associated membrane protein 2	0.033
saga	S-antigen; retina and pineal gland (arrestin) a	0.033	Fly
st3gal5l	ST3 beta-galactoside alpha-2,3-sialyltransferase 5, like	0.032
hint2	histidine triad nucleotide binding protein 2	0.032
zgc:73155	zgc:73155	0.031
calb2b	calbindin 2b, (calretinin)	0.031
foxg1b	forkhead box G1b	0.030
mpp5b	membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5b)	0.030
pdzd7a	PDZ domain containing 7a	0.030
slc1a2a	solute carrier family 1 (glial high affinity glutamate transporter), member 2a	0.030
pde6c	phosphodiesterase 6C, cGMP-specific, cone, alpha prime	0.030
sagb	S-antigen; retina and pineal gland (arrestin) b	0.030	Fly
grk1b	G protein-coupled receptor kinase 1 b	0.029
slc25a3a	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3a	0.029
slc2a11l	solute carrier family 2 (facilitated glucose transporter), member 11-like	0.027
otx5	orthodenticle homolog 5	0.027
opn3	opsin 3 (encephalopsin, panopsin)	0.026	Zebrafish
th2	tyrosine hydroxylase 2	0.025
kcnq1	potassium voltage-gated channel, KQT-like subfamily, member 1	0.024
elnb	elastin b	0.024
slc6a4b	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4B	0.023
zgc:111821	zgc:111821	0.023
spg11	spastic paraplegia 11	0.022
trpc5	transient receptor potential cation channel, subfamily C, member 5	0.020
tmx3	thioredoxin-related transmembrane protein 3	0.020
mc4r	melanocortin 4 receptor	0.019
nr1d1	nuclear receptor subfamily 1, group d, member 1	0.019
fbln5	fibulin 5	0.019
arr3b	arrestin 3b, retinal (X-arrestin)	0.019
si:dkey-105e17.1	si:dkey-105e17.1	0.018
htr1bd	5-hydroxytryptamine (serotonin) receptor 1bd	0.018
panx2	pannexin 2	0.018
c21orf59l	c21orf59 homolog (H. sapiens), like	0.017
arl3l2	ADP-ribosylation factor-like 3, like 2	0.017
atp1b2b	ATPase, Na+/K+ transporting, beta 2b polypeptide	0.017
LOC100331536	opsin-3-like	0.017
cx35	connexin 35	0.017
gabra6a	gamma-aminobutyric acid (GABA) A receptor, alpha 6a	0.017
opn1mw2	opsin 1 (cone pigments), medium-wave-sensitive, 2	0.017
zgc:73359	zgc:73359	0.017
ulk2	unc-51-like kinase 2 (C. elegans)	0.017
lysmd3	LysM, putative peptidoglycan-binding, domain containing 3	0.017
adra2c	adrenergic, alpha-2C-, receptor	0.017
LOC100331208	probable pancreatic secretory proteinase inhibitor-like	0.017
gnrhr3	gonadotropin releasing hormone receptor 3	0.016
ckmt2	creatine kinase, mitochondrial 2 (sarcomeric)	0.016
pdzd7b	PDZ domain containing 7b	0.016
LOC799612	prolactin 2	0.016
grin1a	glutamate receptor, ionotropic, N-methyl D-aspartate 1a	0.016
ift52	intraflagellar transport protein 52	0.015
syt7b	synaptotagmin VIIb	0.015
si:ch1073-463l14.2	si:ch1073-463l14.2	0.015
glra4b	glycine receptor, alpha 4b	0.015
zgc:162213	zgc:162213	0.015
fgf18b	fibroblast growth factor 18b	0.015
klf4a	Kruppel-like transcription factor 4a	0.015
mc1r	melanocortin 1 receptor	0.015
clic5	chloride intracellular channel 5	0.015
slc18a2	solute carrier family 18 (vesicular monoamine), member 2	0.015
guk1	guanylate kinase 1	0.015
scn1ba	sodium channel, voltage-gated, type I, beta a	0.014
crb2b	crumbs homolog 2b	0.014
cplx4a	complexin 4a	0.014
htr1ab	5-hydroxytryptamine (serotonin) receptor 1A b	0.014
slc15a2	solute carrier family 15 (H+/peptide transporter), member 2	0.013
nr2e3	nuclear receptor subfamily 2, group E, member 3	0.013
si:dkey-68l7.3	si:dkey-68l7.3	0.013
rtn4r	reticulon 4 receptor	0.013
lrrc38	leucine rich repeat containing 38	0.013
clock	clock	0.013
zgc:136930	zgc:136930	0.013
wu:fc51d09	wu:fc51d09	0.013
gngt2b	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2b	0.013
acta2	actin, alpha 2, smooth muscle, aorta	0.013
crb3b	crumbs homolog 3b	0.013
rpe65a	retinal pigment epithelium-specific protein 65a	0.013
scn4ba	sodium channel, voltage-gated, type IV, beta a	0.013
pdca	phosducin a	0.013
nr1d4b	nuclear receptor subfamily 1, group D, member 4b	0.013
dkk1a	dickkopf 1a	0.013
ppp4r4	protein phosphatase 4, regulatory subunit 4	0.012
tectb	tectorin beta	0.012
grk1a	G protein-coupled receptor kinase 1 a	0.012	Human
slc6a4a	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4A	0.012
es1	es1 protein	0.012
e4bp4-2	E4 binding protein 4-2	0.012
rorcb	RAR-related orphan receptor C b	0.012
fscn2	fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	0.012
kif17	kinesin family member 17	0.012
sim1b	single-minded homolog 1b (Drosophila)	0.012
crb1	crumbs homolog 1 (Drosophila)	0.012
arl13a	ADP-ribosylation factor-like 13A	0.012
zgc:109949	zgc:109949	0.011
cx52.6	connexin 52.6	0.011
pink1	PTEN induced putative kinase 1	0.011
zgc:110146	zgc:110146	0.011
n4bp2	NEDD4 binding protein 2	0.011
glra3	glycine receptor, alpha 3	0.011
obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	0.011
or103-1	odorant receptor, family C, subfamily 103, member 1	0.011
ush1c	Usher syndrome 1C (autosomal recessive, severe)	0.011
im:7154787	im:7154787	0.011
prph2b	peripherin 2b (retinal degeneration, slow)	0.011
grk7b	G protein-coupled receptor kinase 7b	0.011
zgc:193504	zgc:193504	0.011
zgc:123017	zgc:123017	0.011
wu:fb80e01	wu:fb80e01	0.011
scn4aa	sodium channel, voltage-gated, type IV, alpha, a	0.011
als2cr4a	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4a	0.011
pcbp3	poly(rC) binding protein 3	0.011
zgc:158626	zgc:158626	0.011
wu:fa04h02	wu:fa04h02	0.011
slc15a1b	solute carrier family 15 (oligopeptide transporter), member 1b	0.011
atxn7l2a	ataxin 7-like 2a	0.011
ela2l	elastase 2 like	0.011
LOC798075	fascin 2A	0.010
samsn1b	SAM domain, SH3 domain and nuclear localisation signals, 1b	0.010
nppcl	natriuretic peptide precursor C-like protein	0.010
faah2a	fatty acid amide hydrolase 2a	0.010
cabp1	calcium binding protein 1	0.010
si:dkey-173g15.1	si:dkey-173g15.1	0.010
fstl4	follistatin-like 4	0.010
si:dkey-108d22.4	si:dkey-108d22.4	0.010
guca1g	guanylate cyclase activator 1g	0.010
si:ch211-13k12.1	si:ch211-13k12.1	0.010
ptprn2l	protein tyrosine phosphatase, receptor type, N polypeptide 2, like	0.010
zgc:154110	zgc:154110	0.010