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Process View

Danio rerio

10 genes annotated in zebrafish

neural plate regionalization

The pattern specification process that results in the subdivision of an axis or axes of the neural plate in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.

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In addition to gene-name show these genes:

Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "neural plate regionalization"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "neural plate regionalization" (in gray)

Name	Description	Probability	Func Analog Organism
foxa3	forkhead box A3	0.830
foxa2	forkhead box A2	0.810	Zebrafish
hmx4	H6 family homeobox 4	0.776
wnt4a	wingless-type MMTV integration site family, member 4a	0.620	Zebrafish
wnt11	wingless-type MMTV integration site family, member 11	0.463
lft1	lefty1	0.332
sp5l	Sp5 transcription factor-like	0.265
sox2	SRY-box containing gene 2	0.263
flh	floating head	0.259
foxj1a	forkhead box J1a	0.230
wnt3	wingless-type MMTV integration site family, member 3	0.226	Zebrafish
hmx1	H6 homeo box 1	0.223
tbx1	T-box 1	0.222
ephb4b	eph receptor B4b	0.210
wnt5b	wingless-type MMTV integration site family, member 5b	0.208	Zebrafish
ippk	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	0.197
dkk1b	dickkopf 1b	0.194
frzb	frizzled-related protein	0.193	Zebrafish
dact1	dapper homolog 1, antagonist of beta-catenin (xenopus)	0.189
nrarpa	notch-regulated ankyrin repeat protein a	0.186
wnt10a	wingless-type MMTV integration site family, member 10a	0.160	Zebrafish
ndr2	nodal-related 2	0.156
dharma	dharma	0.141	Zebrafish
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.136
sfrp1b	secreted frizzled-related protein 1b	0.130
admp	anti-dorsalizing morphogenic protein	0.127
znf503	zinc finger protein 503	0.122
sfrp1a	secreted frizzled-related protein 1a	0.109
hlxb9la	homeo box HB9 like a	0.102	Zebrafish
cdx1b	caudal type homeobox 1 b	0.096
ntla	no tail a	0.095
spns2	spinster homolog 2 (Drosophila)	0.092
tp63	tumor protein p63	0.089
fn1	fibronectin 1	0.086
ctsl1b	cathepsin L, 1 b	0.083
gbx2	gastrulation brain homeo box 2	0.082	Zebrafish
foxi3a	forkhead box I3a	0.080	Zebrafish
wnt7ba	wingless-type MMTV integration site family, member 7Ba	0.079	Zebrafish
gata6	GATA-binding protein 6	0.078
wnt8a	wingless-type MMTV integration site family, member 8a	0.074	Zebrafish
aplnra	apelin receptor a	0.072
wnt8b	wingless-type MMTV integration site family, member 8b	0.070
pitx2	paired-like homeodomain transcription factor 2	0.069
foxi3b	forkhead box I3b	0.068	Zebrafish
sox17	SRY-box containing gene 17	0.065
dscam	Down syndrome cell adhesion molecule	0.064
nog1	noggin 1	0.063	Human
wnt2	wingless-type MMTV integration site family member 2	0.062	Zebrafish
LOC566708	FL cytokine receptor-like	0.061
vent	ventral expressed homeobox	0.057
sox19a	SRY-box containing gene 19a	0.055
fzd7a	frizzled homolog 7a	0.051
wnt7bb	wingless-type MMTV integration site family, member 7Bb	0.050
smad7	MAD, mothers against decapentaplegic homolog 7 (Drosophila)	0.049
irf6	interferon regulatory factor 6	0.049
otx1b	orthodenticle homolog 1b	0.049
fgf17	fibroblast growth factor 17	0.048
zic3	zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila)	0.048
rnasel1	ribonuclease like 1	0.047
zic2a	zic family member 2 (odd-paired homolog, Drosophila), a	0.046
amotl2a	angiomotin like 2a	0.045
wif1	wnt inhibitory factor 1	0.045
fzd10	frizzled homolog 10	0.043	Zebrafish
tfap2c	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	0.042
otx1a	orthodenticle homolog 1a	0.042
wnt3a	wingless-type MMTV integration site family, member 3A	0.040	Zebrafish
dlc	deltaC	0.039
fzd8a	frizzled homolog 8a	0.039
six4b	sine oculis homeobox homolog 4b	0.038
gbx1	gastrulation brain homeobox 1	0.038
dld	deltaD	0.038
lmx1b.1	LIM homeobox transcription factor 1, beta 1	0.038
rel	v-rel reticuloendotheliosis viral oncogene homolog	0.037
gata4	GATA-binding protein 4	0.035
tal2	T-cell acute lymphocytic leukemia 2	0.034
wnt10b	wingless-type MMTV integration site family, member 10b	0.034	Zebrafish
wnt1	wingless-type MMTV integration site family, member 1	0.034	Zebrafish
il17rd	interleukin 17 receptor D	0.033
wnt2bb	wingless-type MMTV integration site family, member 2Bb	0.033	Zebrafish
msxb	muscle segment homeobox B	0.032
fgf3	fibroblast growth factor 3	0.032
snai1b	snail homolog 1b (Drosophila)	0.032
map2k4a	mitogen-activated protein kinase kinase 4a	0.031
hlxb9lb	homeo box HB9 like b	0.030	Zebrafish
lft2	lefty2	0.030
rest	RE1-silencing transcription factor	0.030
six2a	sine oculis-related homeobox 2a	0.029
lmo4a	LIM domain only 4a	0.029
otx2	orthodenticle homolog 2	0.028
fbn2b	fibrillin 2b	0.028
lmx1b.2	LIM homeobox transcription factor 1, beta 2	0.027
rarga	retinoic acid receptor gamma a	0.027
twist1a	twist1a	0.027
si:ch211-173o4.2	si:ch211-173o4.2	0.026
wnt9a	wingless-type MMTV integration site family, member 9A	0.026	Zebrafish
cdx4	caudal type homeo box transcription factor 4	0.026
bon	bonnie and clyde	0.025
pcdh8	protocadherin 8	0.024
dct	dopachrome tautomerase	0.024
fgfrl1b	fibroblast growth factor receptor-like 1b	0.024
zfyve26	zinc finger, FYVE domain containing 26	0.024
zgc:171495	zgc:171495	0.023
ext1a	exostoses (multiple) 1a	0.023
gsc	goosecoid	0.023
zic6	zic family member 6	0.022
og9x	OG9 homeobox gene	0.022
wnt11r	wingless-type MMTV integration site family, member 11, related	0.022	Zebrafish
hoxb5a	homeo box B5a	0.022
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.022
sox32	SRY-box containing gene 32	0.022
fzd8b	frizzled homolog 8b	0.021	Zebrafish
vsx1	visual system homeobox 1 homolog, chx10-like	0.020
inka1a	induced in neural crest by AP2, 1a	0.020
wnt16	wingless-type MMTV integration site family, member 16	0.020
gata5	GATA-binding protein 5	0.020
smad3b	MAD, mothers against decapentaplegic homolog 3b (Drosophila)	0.020
glcea	glucuronyl C5-epimerase a	0.020
tbx16	T-box gene 16	0.020
scube2	signal peptide, CUB domain, EGF-like 2	0.020
oep	one-eyed pinhead	0.019
lhx5	LIM homeobox 5	0.019
hmgcrb	3-hydroxy-3-methylglutaryl-Coenzyme A reductase b	0.019
foxc1a	forkhead box C1a	0.019
cx30.3	connexin 30.3	0.019
gli1	GLI-Kruppel family member 1	0.019
mbtps1	membrane-bound transcription factor protease, site 1	0.019
eve1	even-skipped-like1	0.019
hesx1	homeo box (expressed in ES cells) 1	0.019
twist3	twist3	0.018
nkx2.3	NK2 transcription factor related 3	0.018
lhx1b	LIM homeobox 1b	0.017
dkk3	dickkopf homolog 3 (Xenopus laevis)	0.017
bmp4	bone morphogenetic protein 4	0.017
frem3	Fras1 related extracellular matrix 3	0.017
foxa1	forkhead box A1	0.017	Zebrafish
msxc	muscle segment homeobox C	0.017
nkd1	naked cuticle homolog 1 (Drosophila)	0.017
pcdh18a	protocadherin 18a	0.017
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.017
gro2	groucho 2	0.016
fgf8b	fibroblast growth factor 8 b	0.016
wnt4b	wingless-type MMTV integration site family, member 4b	0.016	Zebrafish
prdm1a	PR domain containing 1a, with ZNF domain	0.016
six3a	sine oculis homeobox homolog 3a	0.016
nkx6.2	NK6 transcription factor related, locus 2	0.016
sb:cb166	sb:cb166	0.016
bcl2	B-cell leukemia/lymphoma 2	0.016
sid4	secreted immunoglobulin domain 4	0.016
fgf10a	fibroblast growth factor 10a	0.015
col11a2	collagen type XI alpha-2	0.015
mxtx2	mix-type homeobox gene 2	0.015
map2k7	mitogen-activated protein kinase kinase 7	0.014
rasl11b	RAS-like, family 11, member B	0.014
itih2	inter-alpha (globulin) inhibitor H2	0.014
pwp2h	PWP2 periodic tryptophan protein homolog (yeast)	0.014
ctnnb1	catenin (cadherin-associated protein), beta 1	0.014
hspb1	heat shock protein, alpha-crystallin-related, 1	0.014
sim2	single-minded homolog 2 (Drosophila)	0.014
prom1b	prominin 1 b	0.014
pdlim3a	PDZ and LIM domain 3a	0.013
gata3	GATA-binding protein 3	0.013
znf703	zinc finger protein 703	0.013
runx3	runt-related transcription factor 3	0.013
rfx2	regulatory factor X, 2 (influences HLA class II expression)	0.013
eya1	eyes absent homolog 1	0.013
eng2a	engrailed 2a	0.013
met	met proto-oncogene (hepatocyte growth factor receptor)	0.013
sox3	SRY-box containing gene 3	0.013
celsr2	cadherin, EGF LAG seven-pass G-type receptor 2 and cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	0.013
zic5	zic family member 5 (odd-paired homolog, Drosophila)	0.012
si:dkey-273o13.1	si:dkey-273o13.1	0.012
zic2b	zic family member 2 (odd-paired homolog, Drosophila) b	0.012
puf60a	poly-U binding splicing factor a	0.012
pax8	paired box gene 8	0.012
nkd2	naked cuticle homolog 2 and naked 2a	0.012
znf711	zinc finger protein 711	0.012
zgc:171802	zgc:171802	0.012
dab1b	disabled homolog 1b (Drosophila)	0.012
dao.2	D-amino-acid oxidase 2	0.012
mapk7	mitogen-activated protein kinase 7	0.011
zgc:111944	zgc:111944	0.011
hgfa	hepatocyte growth factor a	0.011
lrp2	low density lipoprotein-related protein 2	0.011
lratb	lecithin retinol acyltransferase b (phosphatidylcholine--retinol O-acyltransferase b)	0.011
grem2	gremlin 2, cysteine knot superfamily	0.011
fyna	FYN oncogene related to SRC, FGR, YES a	0.011
pld1a	phospholipase D1a	0.011
pcsk5b	proprotein convertase subtilisin/kexin type 5b	0.011
mga	MAX gene associated	0.011
rnf41	ring finger protein 41	0.011
cpa2	carboxypeptidase A2 (pancreatic)	0.010
ror2	receptor tyrosine kinase-like orphan receptor 2	0.010
axin1	axin 1	0.010
bmp2a	bone morphogenetic protein 2a	0.010
eaf1	ELL associated factor 1	0.010
col2a1a	collagen type II, alpha-1a	0.010
shhb	sonic hedgehog b	0.010