IMP
Process View
The network for 'axial mesoderm formation' in your query organism is displayed on the left, if relationships are supported by the integrated data. Moving any of the genes in that network will simultaneously update the homologs in the networks displayed to the right (if they exist). Additionally, hovering over any nodes will highlight the identified functionally similar homologs in the other networks. Last, the bar above the networks allows you to remove/add additional organisms. Simily drag and drop the organism names in the desired order.
Multiple Organisms
axial mesoderm formation
The process that gives rise to the axial mesoderm. This process pertains to the initial formation of the structure from unspecified parts.
| Name | Description | Probability | Func Analog Organism |
|---|---|---|---|
| Gli3 | GLI-Kruppel family member GLI3 | 0.995 | |
| Foxc1 | forkhead box C1 | 0.982 | |
| Fgfr2 | fibroblast growth factor receptor 2 | 0.978 | |
| Zic3 | zinc finger protein of the cerebellum 3 | 0.978 | |
| Bmp4 | bone morphogenetic protein 4 | 0.977 | |
| Msx1 | homeobox, msh-like 1 | 0.974 | |
| Shh | sonic hedgehog | 0.971 | |
| Efnb2 | ephrin B2 | 0.965 | |
| Pdgfra | platelet derived growth factor receptor, alpha polypeptide | 0.959 | |
| Smo | smoothened homolog (Drosophila) | 0.935 | |
| Ctnnb1 | catenin (cadherin associated protein), beta 1 | 0.900 | |
| Hand1 | heart and neural crest derivatives expressed transcript 1 | 0.899 | |
| Prrx1 | paired related homeobox 1 | 0.893 | |
| Sox9 | SRY-box containing gene 9 | 0.885 | |
| Dlx5 | distal-less homeobox 5 | 0.844 | |
| Ror2 | receptor tyrosine kinase-like orphan receptor 2 | 0.828 | |
| Epha4 | Eph receptor A4 | 0.827 | |
| Smad6 | MAD homolog 6 (Drosophila) | 0.823 | |
| Gli2 | GLI-Kruppel family member GLI2 | 0.818 | |
| Rarg | retinoic acid receptor, gamma | 0.766 | |
| Foxc2 | forkhead box C2 | 0.706 | |
| Dnahc11 | dynein, axonemal, heavy chain 11 | 0.691 | |
| Nodal | nodal | 0.667 | |
| Efnb1 | ephrin B1 | 0.653 | |
| Otx2 | orthodenticle homolog 2 (Drosophila) | 0.629 | |
| Lhx1 | LIM homeobox protein 1 | 0.628 | |
| Pax2 | paired box gene 2 | 0.608 | |
| Fgfr3 | fibroblast growth factor receptor 3 | 0.595 | |
| Eya1 | eyes absent 1 homolog (Drosophila) | 0.579 | |
| Tgfb2 | transforming growth factor, beta 2 | 0.559 | |
| Gdf5 | growth differentiation factor 5 | 0.556 | |
| Fgf8 | fibroblast growth factor 8 | 0.536 | |
| Hoxd13 | homeobox D13 | 0.527 | |
| Rspo2 | R-spondin 2 homolog (Xenopus laevis) | 0.511 | |
| Hand2 | heart and neural crest derivatives expressed transcript 2 | 0.499 | |
| Zeb1 | zinc finger E-box binding homeobox 1 | 0.468 | |
| Gpc3 | glypican 3 | 0.455 | |
| Pbx1 | pre B-cell leukemia transcription factor 1 | 0.449 | |
| Fgfr1 | fibroblast growth factor receptor 1 | 0.417 | |
| Gata4 | GATA binding protein 4 | 0.408 | |
| Tbx1 | T-box 1 | 0.406 | |
| Chrd | chordin | 0.400 | |
| Gata5 | GATA binding protein 5 | 0.397 | |
| Msx2 | homeobox, msh-like 2 | 0.394 | |
| Tbx15 | T-box 15 | 0.389 | |
| Gdf6 | growth differentiation factor 6 | 0.375 | |
| Gsc | goosecoid homeobox | 0.347 | |
| Phex | phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets) | 0.333 | |
| Apc | adenomatosis polyposis coli | 0.332 | |
| Smad3 | MAD homolog 3 (Drosophila) | 0.325 | |
| Pax3 | paired box gene 3 | 0.319 | |
| Kif3a | kinesin family member 3A | 0.313 | |
| Lrp6 | low density lipoprotein receptor-related protein 6 | 0.306 | |
| Vangl2 | vang-like 2 (van gogh, Drosophila) | 0.297 | |
| Tbx3 | T-box 3 | 0.292 | |
| Six1 | sine oculis-related homeobox 1 homolog (Drosophila) | 0.285 | |
| Smad7 | MAD homolog 7 (Drosophila) | 0.272 | |
| Pitx2 | paired-like homeodomain transcription factor 2 | 0.252 | |
| Gsk3b | glycogen synthase kinase 3 beta | 0.246 | |
| Irs1 | insulin receptor substrate 1 | 0.242 | |
| Alx4 | aristaless-like homeobox 4 | 0.240 | |
| Ptk7 | PTK7 protein tyrosine kinase 7 | 0.228 | |
| Foxh1 | forkhead box H1 | 0.223 | |
| Rnf111 | ring finger 111 | 0.210 | |
| Gata6 | GATA binding protein 6 | 0.208 | |
| Bmp2 | bone morphogenetic protein 2 | 0.198 | |
| Emid2 | EMI domain containing 2 | 0.198 | |
| Ptch1 | patched homolog 1 | 0.197 | |
| Gas1 | growth arrest specific 1 | 0.193 | |
| Sema6a | sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A | 0.190 | |
| Gdf1 | growth differentiation factor 1 | 0.188 | |
| Mks1 | Meckel syndrome, type 1 | 0.174 | |
| Mn1 | meningioma 1 | 0.173 | |
| Efna4 | ephrin A4 | 0.152 | |
| Col2a1 | collagen, type II, alpha 1 | 0.151 | |
| Alx1 | ALX homeobox 1 | 0.149 | |
| Lef1 | lymphoid enhancer binding factor 1 | 0.146 | |
| Tead3 | TEA domain family member 3 | 0.145 | |
| Cdon | cell adhesion molecule-related/down-regulated by oncogenes | 0.145 | |
| Pthlh | parathyroid hormone-like peptide | 0.144 | |
| Tcfap2a | transcription factor AP-2, alpha | 0.143 | |
| Lrp5 | low density lipoprotein receptor-related protein 5 | 0.140 | |
| Prrx2 | paired related homeobox 2 | 0.138 | |
| Arhgef15 | Rho guanine nucleotide exchange factor (GEF) 15 | 0.135 | |
| Pcsk6 | proprotein convertase subtilisin/kexin type 6 | 0.133 | |
| Rarb | retinoic acid receptor, beta | 0.132 | |
| Ret | ret proto-oncogene | 0.130 | |
| Kcnk2 | potassium channel, subfamily K, member 2 | 0.120 | |
| Bmp7 | bone morphogenetic protein 7 | 0.111 | |
| Foxf2 | forkhead box F2 | 0.111 | |
| Wnt3a | wingless-related MMTV integration site 3A | 0.108 | |
| Bmpr1b | bone morphogenetic protein receptor, type 1B | 0.104 | |
| Nog | noggin | 0.102 | |
| Nr5a1 | nuclear receptor subfamily 5, group A, member 1 | 0.100 | |
| Ephb3 | Eph receptor B3 | 0.100 | |
| Tbx6 | T-box 6 | 0.100 | |
| Zfp503 | zinc finger protein 503 | 0.097 | |
| Foxa2 | forkhead box A2 | 0.093 | |
| Bmper | BMP-binding endothelial regulator | 0.087 | |
| Hapln1 | hyaluronan and proteoglycan link protein 1 | 0.085 |
Loading network...
Danio rerio
| Name | Description | Probability | Func Analog Organism |
|---|---|---|---|
| ntla | no tail a | 0.998 | |
| chd | chordin | 0.998 | |
| oep | one-eyed pinhead | 0.998 | |
| ndr2 | nodal-related 2 | 0.998 | |
| flh | floating head | 0.995 | |
| sox32 | SRY-box containing gene 32 | 0.986 | |
| tbx16 | T-box gene 16 | 0.975 | |
| ndr1 | nodal-related 1 | 0.970 | |
| shha | sonic hedgehog a | 0.968 | |
| wnt11 | wingless-type MMTV integration site family, member 11 | 0.960 | |
| pou5f1 | POU domain, class 5, transcription factor 1 | 0.948 | |
| fgf8a | fibroblast growth factor 8 a | 0.865 | |
| mib | mind bomb | 0.858 | |
| bmp7a | bone morphogenetic protein 7a | 0.825 | |
| dharma | dharma | 0.786 | |
| cdx4 | caudal type homeo box transcription factor 4 | 0.714 | |
| smo | smoothened homolog (Drosophila) | 0.700 | |
| foxh1 | forkhead box H1 | 0.644 | |
| admp | anti-dorsalizing morphogenic protein | 0.628 | |
| vangl2 | vang-like 2 (van gogh, Drosophila) | 0.565 | |
| gli1 | GLI-Kruppel family member 1 | 0.554 | |
| bon | bonnie and clyde | 0.547 | |
| dld | deltaD | 0.535 | |
| ptch1 | patched 1 | 0.484 | |
| bmp2b | bone morphogenetic protein 2b | 0.437 | |
| pax2a | paired box gene 2a | 0.385 | |
| gpc4 | glypican 4 | 0.365 | |
| dzip1 | DAZ interacting protein 1 | 0.364 | |
| lhx1a | LIM homeobox 1a | 0.349 | |
| vent | ventral expressed homeobox | 0.325 | |
| lft1 | lefty1 | 0.310 | |
| tbx1 | T-box 1 | 0.305 | |
| eve1 | even-skipped-like1 | 0.285 | |
| cdh2 | cadherin 2, neuronal | 0.269 | |
| mpp5a | membrane protein, palmitoylated 5a (MAGUK p55 subfamily member 5a) | 0.250 | |
| foxi1 | forkhead box I1 | 0.223 | |
| wnt5b | wingless-type MMTV integration site family, member 5b | 0.198 | |
| lft2 | lefty2 | 0.192 | |
| hnf1ba | HNF1 homeobox Ba | 0.189 | |
| eomesa | eomesodermin homolog a | 0.178 | |
| rx3 | retinal homeobox gene 3 | 0.149 | |
| smarca4 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 | 0.147 | |
| tll1 | tolloid-like 1 | 0.144 | |
| nanos3 | nanos homolog 3 | 0.143 | |
| her7 | hairy and enhancer of split related-7 | 0.138 | |
| ptch2 | patched 2 | 0.135 | |
| tbx24 | T-box 24 | 0.124 | |
| dkk1b | dickkopf 1b | 0.110 | |
| spns2 | spinster homolog 2 (Drosophila) | 0.110 | |
| rerea | arginine-glutamic acid dipeptide (RE) repeats a | 0.109 | |
| lrrc6 | leucine rich repeat containing 6 | 0.108 | |
| aldh1a2 | aldehyde dehydrogenase 1 family, member A2 | 0.105 | |
| foxd3 | forkhead box D3 | 0.105 | |
| med12 | mediator of RNA polymerase II transcription, subunit 12 homolog | 0.102 | |
| dact2 | dapper homolog 2, antagonist of beta-catenin (xenopus) | 0.099 | |
| scrib | scribbled homolog (Drosophila) | 0.098 | |
| szl | sizzled | 0.098 | |
| smad5 | MAD homolog 5 (Drosophila) | 0.096 | |
| nog1 | noggin 1 | 0.089 | |
| tp53 | tumor protein p53 | 0.087 | |
| og9x | OG9 homeobox gene | 0.086 | |
| foxa3 | forkhead box A3 | 0.079 | |
| foxd5 | forkhead box D5 | 0.077 | |
| vasa | vasa homolog | 0.071 | |
| bmpr1aa | bone morphogenetic protein receptor, type 1aa | 0.067 | |
| mxtx2 | mix-type homeobox gene 2 | 0.063 | |
| nxph1 | neurexophilin 1 | 0.061 | |
| pkd2 | polycystic kidney disease 2 | 0.057 | |
| notch1a | notch homolog 1a | 0.056 | |
| sox17 | SRY-box containing gene 17 | 0.052 | |
| zgc:193933 | zgc:193933 | 0.052 | |
| atoh7 | atonal homolog 7 | 0.051 | |
| fn1 | fibronectin 1 | 0.050 | |
| col8a1a | collagen, type VIII, alpha 1a | 0.047 | |
| otx1a | orthodenticle homolog 1a | 0.045 | |
| snai1a | snail homolog 1a (Drosophila) | 0.044 | |
| vox | ventral homeobox | 0.044 | |
| acvr1b | activin A receptor, type IB | 0.044 | |
| cdc25 | cell division cycle 25 homolog | 0.043 | |
| sim1a | single-minded homolog 1a (Drosophila) | 0.042 | |
| tfap2a | transcription factor AP-2 alpha | 0.042 | |
| cftr | cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7) | 0.038 | |
| scube2 | signal peptide, CUB domain, EGF-like 2 | 0.037 | |
| cdh1 | cadherin 1, epithelial | 0.036 | |
| foxa2 | forkhead box A2 | 0.036 | |
| acvr1l | activin A receptor, type I like | 0.033 | |
| sst1.1 | somatostatin 1, tandem duplicate 1 | 0.033 | |
| bmp4 | bone morphogenetic protein 4 | 0.033 | |
| lrrc50 | leucine rich repeat containing 50 | 0.032 | |
| dla | deltaA | 0.032 | |
| fzd8b | frizzled homolog 8b | 0.030 | |
| fezf2 | FEZ family zinc finger 2 | 0.030 | |
| msgn1 | mesogenin 1 | 0.030 | |
| nkx6.1 | NK6 transcription factor related, locus 1 (Drosophila) | 0.029 | |
| fgf3 | fibroblast growth factor 3 | 0.028 | |
| wnt4b | wingless-type MMTV integration site family, member 4b | 0.028 | |
| arnt2 | aryl hydrocarbon receptor nuclear translocator 2 | 0.028 | |
| fzd5 | frizzled homolog 5 | 0.027 | |
| hand2 | heart and neural crest derivatives expressed transcript 2 | 0.026 | |
| apc | adenomatosis polyposis coli | 0.026 |