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Danio rerio

1 genes annotated in zebrafish

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entrainment of circadian clock by photoperiod

GO:0043153

The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night).

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "entrainment of circadian clock by photoperiod"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "entrainment of circadian clock by photoperiod" (in gray)

Name	Description	Probability	Func Analog Organism
cry1a	cryptochrome 1a	0.983	Mouse
per2	period homolog 2 (Drosophila)	0.963
nr1d2b	nuclear receptor subfamily 1, group D, member 2b	0.822
hsf2	heat shock factor 2	0.694
cry3	cryptochrome 3	0.583	Mouse
tef	thyrotroph embryonic factor	0.534
cry-dash	cryptochrome DASH	0.414
cry5	cryptochrome 5	0.410
opn4x1	opsin 4x1	0.378	Fly
egr1	early growth response 1	0.297
per3	period homolog 3 (Drosophila)	0.234	Zebrafish
gc3	guanylyl cyclase 3	0.225
zgc:77060	zgc:77060	0.207
si:dkey-258f14.5	si:dkey-258f14.5	0.133
opn4a	opsin 4a (melanopsin)	0.118	Fly
hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.103
LOC100331502	melanopsin-B-like	0.098
ddb2	damage-specific DNA binding protein 2	0.092
nr1d2a	nuclear receptor subfamily 1, group D, member 2a	0.092
gnat2	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2	0.088
csnk1db	casein kinase 1, delta b	0.085
dedd1	death effector domain-containing 1	0.084
brd2a	bromodomain-containing 2a	0.075
rho	rhodopsin	0.071
cry1b	cryptochrome 1b	0.069	Mouse
rorab	RAR-related orphan receptor A, paralog b	0.068
ctbp1	C-terminal binding protein 1	0.065
itga2b	integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)	0.058
stk35l	serine/threonine kinase 35, like	0.056
zfyve26	zinc finger, FYVE domain containing 26	0.056
crb2b	crumbs homolog 2b	0.053
atp6v1ba	ATPase, H+ transporting, lysosomal, V1 subunit B, member a	0.051
grk7a	G-protein-coupled receptor kinase 7a	0.050
znf395b	zinc finger protein 395b	0.050
rtcd1	RNA terminal phosphate cyclase domain 1	0.049
flj13639	flj13639	0.049
zgc:172136	zgc:172136	0.048
otx1b	orthodenticle homolog 1b	0.048
scn1lab	sodium channel, voltage-gated, type I like, alpha b	0.047
dync1h1	dynein, cytoplasmic 1, heavy chain 1	0.047
clock3	clock homolog 3 (mouse)	0.046
si:dkey-177p2.6	si:dkey-177p2.6	0.044
lin7a	lin-7 homolog A (C. elegans)	0.043
opn1sw2	opsin 1 (cone pigments), short-wave-sensitive 2	0.039
ntf7	neurotrophin 7	0.038
opn1lw1	opsin 1 (cone pigments), long-wave-sensitive, 1	0.038
nr3c1	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.038
etv5b	ets variant 5b	0.037
btk	Bruton agammaglobulinemia tyrosine kinase	0.036
sumo3a	SMT3 suppressor of mif two 3 homolog 3a	0.036
opn1mw1	opsin 1 (cone pigments), medium-wave-sensitive, 1	0.036
siah2l	seven in absentia homolog 2 (Drosophila)-like	0.034
dpf2l	D4, zinc and double PHD fingers family 2, like	0.033
dhrs3a	dehydrogenase/reductase (SDR family) member 3a	0.033
ythdf1	YTH domain family, member 1	0.033
snapc1b	small nuclear RNA activating complex, polypeptide 1b	0.033
guca1c	guanylate cyclase activator 1C	0.032
aplp2	amyloid beta (A4) precursor-like protein 2	0.032
nr1d1	nuclear receptor subfamily 1, group d, member 1	0.031
hspb1	heat shock protein, alpha-crystallin-related, 1	0.030
pnrc2	proline-rich nuclear receptor coactivator 2	0.030
zgc:77155	zgc:77155	0.029
zgc:111821	zgc:111821	0.029
zgc:112180	zgc:112180	0.029
ddx42	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	0.028
slc25a43	solute carrier family 25, member 43	0.028
prkcbb	protein kinase C, beta b	0.028
cox4i2	cytochrome c oxidase subunit IV isoform 2	0.027
ppargc1b	peroxisome proliferative activated receptor, gamma, coactivator 1, beta	0.026
acsl4a	acyl-CoA synthetase long-chain family member 4a	0.026
cry2b	cryptochrome 2b	0.025
anxa11a	annexin A11a	0.025
zgc:112986	zgc:112986	0.025
zgc:153115	zgc:153115	0.024
fas	Fas (TNF receptor superfamily, member 6)	0.024
phf20b	PHD finger protein 20, b	0.024
eif1b	eukaryotic translation initiation factor 1B	0.024
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.023
ela2l	elastase 2 like	0.023
rxrbb	retinoid x receptor, beta b	0.023
abhd2a	abhydrolase domain containing 2a	0.023
copeb	core promoter element binding protein	0.023
cnppd1	cyclin Pas1/PHO80 domain containing 1	0.022
usp7	ubiquitin specific peptidase 7 (herpes virus-associated)	0.022
zmpste24	zinc metallopeptidase, STE24 homolog	0.022
faf2	Fas associated factor family member 2	0.022
pcf11	cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)	0.021
snrk1	SNF related kinase 1	0.021
zgc:175140	zgc:175140	0.020
cadm2b	cell adhesion molecule 2b	0.020
zgc:73134	zgc:73134	0.020
stra6	stimulated by retinoic acid gene 6 homolog (mouse)	0.020
caprin1a	cell cycle associated protein 1a	0.020
mmrn2a	multimerin 2a	0.020
srsf6b	serine/arginine-rich splicing factor 6b	0.020
rp2	retinitis pigmentosa 2 (X-linked recessive)	0.020
fbxw11b	F-box and WD-40 domain protein 11b	0.020
zgc:194876	zgc:194876	0.019
mbp	myelin basic protein	0.019
tra2b	transformer 2 beta homolog (Drosophila)	0.019
lrrfip1a	leucine rich repeat (in FLII) interacting protein 1a	0.019
dusp5	dual specificity phosphatase 5	0.019
LOC569866	hypothetical protein LOC569866	0.019
bcl2l1	bcl2-like 1	0.019
nr4a2b	nuclear receptor subfamily 4, group A, member 2b	0.019
btg2	B-cell translocation gene 2	0.019
aanat2	arylalkylamine N-acetyltransferase	0.019
pafah1b1b	platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit b	0.019
zgc:66326	zgc:66326	0.019
ddx5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.019
rps6kal	ribosomal protein S6 kinase, like	0.019
odc1	ornithine decarboxylase 1	0.018
cx35	connexin 35	0.018
akirin1	akirin 1	0.018
wu:fi18a01	wu:fi18a01	0.018
rhoab	ras homolog gene family, member Ab	0.018
opn4l	opsin 4, like	0.018	Fly
xpc	xeroderma pigmentosum, complementation group C	0.018
atp1b1a	ATPase, Na+/K+ transporting, beta 1a polypeptide	0.018
ror2	receptor tyrosine kinase-like orphan receptor 2	0.018
irf2bp2b	interferon regulatory factor 2 binding protein 2b	0.018
nhsl1b	NHS-like 1b	0.018
letm2	leucine zipper-EF-hand containing transmembrane protein 2	0.017
im:7139293	im:7139293	0.017
spi1	spleen focus forming virus (SFFV) proviral integration oncogene spi1	0.017
si:dkey-42i9.10	si:dkey-42i9.10	0.017
nr2f6b	nuclear receptor subfamily 2, group F, member 6b	0.017	Mouse
snf8	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	0.017
pum1	pumilio homolog 1 (Drosophila)	0.017
zbtb2b	zinc finger and BTB domain containing 2b	0.017
ptpn1	protein tyrosine phosphatase, non-receptor type 1	0.017
rgs8	regulator of G-protein signaling 8	0.017
elna	elastin a	0.016
yth2	YTH domain family 2	0.016
egr2b	early growth response 2b	0.016
foxo3b	forkhead box O3b	0.016
wu:fk48d07	wu:fk48d07	0.016
zgc:101598	zgc:101598	0.016
ppp2r5eb	protein phosphatase 2, regulatory subunit B', epsilon isoform b	0.016
hif1al	hypoxia-inducible factor 1, alpha subunit, like	0.016
trim13	tripartite motif-containing 13	0.016
drap1	DR1-associated protein 1 (negative cofactor 2 alpha)	0.016
safb	scaffold attachment factor B	0.016
kpna3	karyopherin (importin) alpha 3	0.015
cnot6	CCR4-NOT transcription complex, subunit 6	0.015
zbtb4	zinc finger and BTB domain containing 4	0.015
tdh	L-threonine dehydrogenase	0.015
th	tyrosine hydroxylase	0.015
pih1d1	PIH1 domain containing 1	0.015
grk1b	G protein-coupled receptor kinase 1 b	0.015
zgc:66242	zgc:66242	0.015
arg2	arginase, type II	0.015
cflar	CASP8 and FADD-like apoptosis regulator	0.015
tk2	thymidine kinase 2, mitochondrial	0.015
mpv17	MpV17 transgene, murine homolog, glomerulosclerosis	0.015
ddc	dopa decarboxylase	0.015
clic4	chloride intracellular channel 4	0.015
id3	inhibitor of DNA binding 3	0.015
zgc:73328	zgc:73328	0.015
syt13	synaptotagmin XIII	0.015
ube2q2	ubiquitin-conjugating enzyme E2Q family member 2	0.014
si:ch211-198a12.6	si:ch211-198a12.6	0.014
cbsb	cystathionine-beta-synthase b	0.014
ccdc6a	coiled-coil domain containing 6a	0.014
zgc:73336	zgc:73336	0.014
prkar1aa	protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) a	0.014
efna5a	ephrin A5a	0.014
stat1b	signal transducer and activator of transcription 1b	0.014
zgc:55886	zgc:55886	0.014
pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	0.014
cry2a	cryptochrome 2a	0.014
srsf5a	serine/arginine-rich splicing factor 5a	0.014
fhl2b	four and a half LIM domains 2b	0.014
dlg1	discs, large (Drosophila) homolog 1	0.014
sec14l1	SEC14-like 1 (S. cerevisiae)	0.014
khdrbs1b	KH domain containing, RNA binding, signal transduction associated 1b	0.013
psen1	presenilin 1	0.013
pdzd7a	PDZ domain containing 7a	0.013
tmem115	transmembrane protein 115	0.013
rps27a	ribosomal protein S27a	0.013
coq10b	coenzyme Q10 homolog B (S. cerevisiae)	0.013
crkl	v-crk sarcoma virus CT10 oncogene homolog (avian)-like	0.013
hug	HuG	0.013
ren	renin	0.013
pho	phoenix	0.013
casc3	cancer susceptibility candidate 3	0.013
ndufab1	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	0.013
ppm1aa	protein phosphatase, Mg2+/Mn2+ dependent, 1Aa	0.013
chuk	conserved helix-loop-helix ubiquitous kinase	0.013
crb3a	crumbs homolog 3a	0.013
mapk1	mitogen-activated protein kinase 1	0.013
hist1h4l	histone 1, H4, like	0.013
ppp1cab	protein phosphatase 1, catalytic subunit, alpha isoform b	0.013	Mouse
mylipa	myosin regulatory light chain interacting protein a	0.013
rap2b	RAP2B, member of RAS oncogene family	0.013
tia1	cytotoxic granule-associated RNA binding protein 1	0.013
lima1	LIM domain and actin binding 1	0.013
crb3b	crumbs homolog 3b	0.012
yap1	Yes-associated protein 1	0.012
si:ch211-204d2.5	si:ch211-204d2.5	0.012
alp	alkaline phosphatase	0.012
entpd4	ectonucleoside triphosphate diphosphohydrolase 4	0.012
dusp7	dual specificity phosphatase 7	0.012
rassf1	Ras association (RalGDS/AF-6) domain family 1	0.012
pgk1	phosphoglycerate kinase 1	0.012
cyp2n13	cytochrome P450, family 2, subfamily N, polypeptide 13	0.012
top1l	topoisomerase (DNA) I, like	0.012
zgc:73265	zgc:73265	0.012
ntrk2a	neurotrophic tyrosine kinase, receptor, type 2a	0.012
bmp8a	bone morphogenetic protein 8a	0.012
parapinopsinb	parapinopsin b	0.012
cplx4a	complexin 4a	0.012
irx3b	iroquois homeobox protein 3b	0.012
zgc:64002	zgc:64002	0.012
sap30l	sap30-like	0.012
th2	tyrosine hydroxylase 2	0.012
tmem177	transmembrane protein 177	0.012
mta2	metastasis associated 1 family, member 2	0.012
metap2	methionyl aminopeptidase 2	0.012
wdr76	WD repeat domain 76	0.012
flii	flightless I homolog (Drosophila)	0.012
atp6v1g1	ATPase, H+ transporting, V1 subunit G isoform 1	0.012
cyb5b	cytochrome b5 type B	0.012
c1qtnf4	C1q and tumor necrosis factor related protein 4	0.011
ehd1	EH-domain containing 1	0.011
tgif1	TGFB-induced factor homeobox 1	0.011
pdk2	pyruvate dehydrogenase kinase, isoenzyme 2	0.011
bckdk	branched chain alpha-ketoacid dehydrogenase kinase	0.011
myd88	myeloid differentiation primary response gene (88)	0.011
flot1b	flotillin 1b	0.011
srrm2	serine/arginine repetitive matrix 2	0.011
opn1sw1	opsin 1 (cone pigments), short-wave-sensitive 1	0.011
fam54b	family with sequence similarity 54, member B	0.011
lmo2	LIM domain only 2 (rhombotin-like 1)	0.011
ptpn11b	protein tyrosine phosphatase, non-receptor type 11, b	0.011
asph	aspartate beta-hydroxylase	0.011
LOC560773	LON peptidase N-terminal domain and RING finger protein 1-like	0.011
elk4	ELK4, ETS-domain protein	0.011
u2af2b	U2 small nuclear RNA auxiliary factor 2b	0.011
ppp2r2d	protein phosphatase 2, regulatory subunit B, delta isoform	0.011
zgc:55876	zgc:55876	0.011
zgc:152990	zgc:152990	0.011
gbp	glycogen synthase kinase binding protein	0.011
si:dkey-177e13.4	si:dkey-177e13.4	0.011
zgc:171872	zgc:171872	0.011
si:ch73-9j13.1	si:ch73-9j13.1	0.011
arl13a	ADP-ribosylation factor-like 13A	0.011
zgc:92217	zgc:92217	0.011
cadm1a	cell adhesion molecule 1a	0.011
pttg1ipb	pituitary tumor-transforming 1 interacting protein b	0.011
pdzrn3	PDZ domain containing RING finger 3 and PDZ domain containing ring finger 3	0.011
bdnf	brain-derived neurotrophic factor	0.011
akirin2	akirin 2	0.011
pik3ip1	phosphoinositide-3-kinase interacting protein 1	0.011
cx55.5	connexin 55.5	0.011
rab7	RAB7, member RAS oncogene family	0.011
cldn5a	claudin 5a	0.011
wu:fc17g12	wu:fc17g12	0.011
gabarapa	GABA(A) receptor-associated protein a	0.011
dmbx1b	diencephalon/mesencephalon homeobox 1b	0.011
med20	mediator complex subunit 20	0.011
opn3	opsin 3 (encephalopsin, panopsin)	0.011
kdm1a	lysine (K)-specific demethylase 1a	0.011
tra2a	transformer-2 alpha	0.011
eif4a2	eukaryotic translation initiation factor 4A, isoform 2	0.010
znf346	zinc finger protein 346	0.010
h3f3d	H3 histone, family 3D	0.010
zgc:64114	zgc:64114	0.010
eif4g2b	eukaryotic translation initiation factor 4, gamma 2b	0.010
waca	WW domain containing adaptor with coiled-coil a	0.010
wu:fc18f06	wu:fc18f06	0.010
cnot8	CCR4-NOT transcription complex, subunit 8	0.010
tectb	tectorin beta	0.010
dlat	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	0.010
slc3a2	solute carrier family 3, member 2	0.010
gatad2a	GATA zinc finger domain containing 2A	0.010
rrm2b	ribonucleotide reductase M2 b	0.010
upf1	upf1 regulator of nonsense transcripts homolog (yeast)	0.010