IMP

Process View

Danio rerio

12 genes annotated in zebrafish

rhombomere formation

The process that gives rise to the rhombomere. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates.

Loading network...

In addition to gene-name show these genes:

Known genes in the process in zebrafish Include functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "rhombomere formation"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "rhombomere formation" (in gray)

Name	Description	Probability	Func Analog Organism
hoxb2a	homeo box B2a	0.933	Zebrafish
dlc	deltaC	0.746
epha4a	eph receptor A4a	0.736
efnb3b	ephrin B3b	0.693
hoxb1a	homeo box B1a	0.672	Zebrafish
efna5a	ephrin A5a	0.655
esrrga	estrogen-related receptor gamma a	0.628
hoxd3a	homeo box D3a	0.608
hnf1ba	HNF1 homeobox Ba	0.596
egr2a	early growth response 2a	0.568	Zebrafish Mouse
hoxa2b	homeo box A2b	0.537	Zebrafish
gbx1	gastrulation brain homeobox 1	0.505
ephb4a	eph receptor B4a	0.490	Zebrafish
msxe	muscle segment homeobox E	0.433
hoxb3a	homeo box B3a	0.380
egr2b	early growth response 2b	0.370
pax2a	paired box gene 2a	0.364
hey1	hairy/enhancer-of-split related with YRPW motif 1	0.348
epb4.1l4	erythrocyte protein band 4.1-like 4	0.343
atoh1a	atonal homolog 1a	0.335
notch1a	notch homolog 1a	0.331	Zebrafish
pax8	paired box gene 8	0.327
hoxb1b	homeo box B1b	0.322
dusp6	dual specificity phosphatase 6	0.318
her8a	hairy-related 8a	0.316
mab21l2	mab-21-like 2	0.274
neurod4	neurogenic differentiation 4	0.255
dld	deltaD	0.253
znf703	zinc finger protein 703	0.248
cyp26c1	cytochrome P450, family 26, subfamily C, polypeptide 1	0.245
bmp4	bone morphogenetic protein 4	0.239
wnt3a	wingless-type MMTV integration site family, member 3A	0.226
hoxb6a	homeo box B6a	0.224
mafba	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	0.223
meis2.2	myeloid ecotropic viral integration site 2.2	0.206
osr2	odd-skipped related 2 (Drosophila)	0.206
ptf1a	pancreas specific transcription factor, 1a	0.181
efnb2a	ephrin B2a	0.171
znf503	zinc finger protein 503	0.169
znfl2a	zinc finger-like gene 2a	0.144
pax6b	paired box gene 6b	0.143
foxn4	forkhead box N4	0.142
cdh2	cadherin 2, neuronal	0.140
egr1	early growth response 1	0.135	Zebrafish
boc	brother of CDO	0.135
lhx1b	LIM homeobox 1b	0.129
nkd1	naked cuticle homolog 1 (Drosophila)	0.120
btg2	B-cell translocation gene 2	0.117
onecutl	one cut domain, family member, like	0.115
irx7	iroquois homeobox protein 7	0.115
prtga	protogenin homolog a (Gallus gallus)	0.110
hoxb4a	homeo box B4a	0.110
notch3	notch homolog 3	0.110
tbx16	T-box gene 16	0.108
hoxa3a	homeo box A3a	0.106
hoxc6a	homeo box C6a	0.104
efnb1	ephrin B1	0.104	Zebrafish
smad1	MAD homolog 1 (Drosophila)	0.095
otx1a	orthodenticle homolog 1a	0.094
etv2	ets variant gene 2	0.090
spry2	sprouty homolog 2	0.087
six4b	sine oculis homeobox homolog 4b	0.086
nkx1.2la	NK1 transcription factor related 2-like,a	0.080
elavl3	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	0.079
crabp2a	cellular retinoic acid binding protein 2, a	0.079
lmx1b.2	LIM homeobox transcription factor 1, beta 2	0.079
wnt1	wingless-type MMTV integration site family, member 1	0.078
zbtb16a	zinc finger and BTB domain containing 16a	0.076
hnf1bb	HNF1 homeobox Bb	0.075
sfrp5	secreted frizzled-related protein 5	0.075
fgf3	fibroblast growth factor 3	0.072
gli1	GLI-Kruppel family member 1	0.071
irx3b	iroquois homeobox protein 3b	0.071
hoxa1a	homeo box A1a	0.070	Zebrafish
hoxc8a	homeo box C8a	0.067
rx1	retinal homeobox gene 1	0.066
her12	hairy-related 12	0.066
fzd5	frizzled homolog 5	0.065
vegfaa	vascular endothelial growth factor Aa	0.065
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.065
sema3d	semaphorin 3d	0.064
tbx6	T-box gene 6	0.062
nkx2.1a	NK2 homeobox 1a	0.062
fzd9b	frizzled homolog 9b	0.060
msxc	muscle segment homeobox C	0.060
gli2a	GLI-Kruppel family member GLI2a	0.059
esrra	estrogen-related receptor alpha	0.057
scube2	signal peptide, CUB domain, EGF-like 2	0.057
ephb3a	eph receptor B3a	0.056	Zebrafish
ptprk	protein tyrosine phosphatase, receptor type, K	0.054
ncam1a	neural cell adhesion molecule 1a	0.053
plagl2	pleiomorphic adenoma gene-like 2	0.052
gata5	GATA-binding protein 5	0.052
wnt8b	wingless-type MMTV integration site family, member 8b	0.051
hoxd4a	homeo box D4a	0.049
par1	paraxis	0.048
dla	deltaA	0.048
hs6st2	heparan sulfate 6-O-sulfotransferase 2	0.047
nr2f5	nuclear receptor subfamily 2, group F, member 5	0.047
tbx5a	T-box 5a	0.046
dab1a	disabled homolog 1a (Drosophila)	0.046
epha4b	eph receptor A4b	0.046	Zebrafish
zgc:101606	zgc:101606	0.044
pcdh10a	protocadherin 10a	0.044
lmx1b.1	LIM homeobox transcription factor 1, beta 1	0.043
six4a	sine oculis homeobox homolog 4a	0.042
fgfr4	fibroblast growth factor receptor 4	0.041
cdx4	caudal type homeo box transcription factor 4	0.041
nrarpb	notch-regulated ankyrin repeat protein b	0.041
tbx18	T-box 18	0.041
nova2	neuro-oncological ventral antigen 2	0.040
nr2f2	nuclear receptor subfamily 2, group F, member 2	0.040
tead3a	TEA domain family member 3 a	0.039
her3	hairy-related 3	0.038
spry4	sprouty (Drosophila) homolog 4	0.038
dbx1b	developing brain homeobox 1b	0.037
hlxb9la	homeo box HB9 like a	0.037
epha7	eph receptor A7	0.037	Zebrafish
foxb1.2	forkhead box B1.2	0.037
flh	floating head	0.037
slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	0.036
notch2	notch homolog 2	0.036	Zebrafish
chd	chordin	0.036
hoxb6b	homeo box B6b	0.035
rx2	retinal homeobox gene 2	0.035
tcf7	transcription factor 7 (T-cell specific, HMG-box)	0.034
her6	hairy-related 6	0.033
clic4	chloride intracellular channel 4	0.032
hoxa4a	homeo box A4a	0.032
meis4.1a	myeloid ecotropic viral integration site 4.1a	0.031
irx4a	iroquois homeobox protein 4a	0.030
gli2b	GLI-Kruppel family member GLI2b	0.029
lmo4a	LIM domain only 4a	0.029
rfx2	regulatory factor X, 2 (influences HLA class II expression)	0.029
axin2	axin 2 (conductin, axil)	0.028
sp5l	Sp5 transcription factor-like	0.028
tbx20	T-box 20	0.028
pou3f3a	POU class 3 homeobox 3a	0.028
prickle2	prickle-like 2 (Drosophila)	0.028
irx1b	iroquois homeobox protein 1, b	0.028
nhsl1a	NHS-like 1a	0.027
pea3	ETS-domain transcription factor pea3	0.027
her5	hairy-related 5	0.027
nphs2	nephrosis 2, idiopathic, steroid-resistant (podocin)	0.026
her1	hairy-related 1	0.026
spry1	sprouty homolog 1 (Drosophila)	0.026
has2	hyaluronan synthase 2	0.025
foxa2	forkhead box A2	0.025
mafk	v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	0.025	Zebrafish
greb1	growth regulation by estrogen in breast cancer 1	0.025
gdf6b	growth differentiation factor 6b	0.024
fgf8b	fibroblast growth factor 8 b	0.024
osr1	odd-skipped related 1 (Drosophila)	0.023
fstl1b	follistatin-like 1b	0.023
hoxd13a	homeo box D13a	0.023
klhl31	kelch-like 31 (Drosophila)	0.022
gsx1	GS homeobox 1	0.022
ntn1a	netrin 1a	0.022
fn1	fibronectin 1	0.022
fzd10	frizzled homolog 10	0.022
tgfb2	transforming growth factor, beta 2	0.022
sb:cb81	sb:cb81	0.021
nrarpa	notch-regulated ankyrin repeat protein a	0.021
raraa	retinoic acid receptor, alpha a	0.021
gja3	gap junction protein, alpha 3	0.021
olig3	oligodendrocyte transcription factor 3	0.021
rest	RE1-silencing transcription factor	0.020
lfng	lunatic fringe homolog	0.019	Zebrafish
jag2	jagged 2	0.019
casz1	castor zinc finger 1	0.019
crb2a	crumbs homolog 2a	0.019
tpbgl	trophoblast glycoprotein-like	0.019
bmp2b	bone morphogenetic protein 2b	0.018
aplnrb	apelin receptor b	0.018
hoxb10a	homeo box B10a	0.018
wnt5b	wingless-type MMTV integration site family, member 5b	0.017
klf4a	Kruppel-like transcription factor 4a	0.017
si:ch211-223p9.1	si:ch211-223p9.1	0.017
jag1a	jagged 1a	0.017
hoxc6b	homeo box C6b	0.017
hs6st1a	heparan sulfate 6-O-sulfotransferase 1a	0.017
wars	tryptophanyl-tRNA synthetase	0.017
lratb	lecithin retinol acyltransferase b (phosphatidylcholine--retinol O-acyltransferase b)	0.016
fzd7a	frizzled homolog 7a	0.016
notch1b	notch homolog 1b	0.016
efna5b	ephrin A5b	0.016
rerea	arginine-glutamic acid dipeptide (RE) repeats a	0.016
h1m	linker histone H1M	0.016
nrp1a	neuropilin 1a	0.016
emx1	empty spiracles homeobox 1	0.016
dusp5	dual specificity phosphatase 5	0.015
eng2b	engrailed 2b	0.015
chrna7	cholinergic receptor, nicotinic, alpha polypeptide 7	0.015
ptpro	protein tyrosine phosphatase, receptor type, O	0.015
bambia	BMP and activin membrane-bound inhibitor (Xenopus laevis) homolog a	0.015
myo15aa	myosin XVAa	0.015
ext1a	exostoses (multiple) 1a	0.015
nav3	neuron navigator 3	0.015
lrrn1	leucine rich repeat neuronal 1	0.015
irx4b	iroquois homeobox protein 4b	0.015
zwi	zwilling	0.014
hlxb9lb	homeo box HB9 like b	0.014
antxr1	anthrax toxin receptor 1	0.014
smad6a	SMAD family member 6a	0.014
smad3b	MAD, mothers against decapentaplegic homolog 3b (Drosophila)	0.014
mtf2	metal response element binding transcription factor 2	0.014
msgn1	mesogenin 1	0.014
efnb2b	ephrin B2b	0.013	Zebrafish
btg1	B-cell translocation gene 1	0.013
hoxa9a	homeo box A9a	0.013
foxi1	forkhead box I1	0.013
six2a	sine oculis-related homeobox 2a	0.013
hoxc1a	homeo box C1a	0.013	Zebrafish
pbx4	pre-B-cell leukemia transcription factor 4	0.013
traf4a	tnf receptor-associated factor 4a	0.013
im:7156396	im:7156396	0.013
prickle1a	prickle-like 1 (Drosophila) a	0.013
vsx2	visual system homeobox 2	0.013
sox9a	SRY-box containing gene 9a	0.013
rxrga	retinoid x receptor, gamma a	0.013
cdh17	cadherin 17, LI cadherin (liver-intestine)	0.013
nrp1b	neuropilin 1b	0.013
prox2	prospero homeobox 2	0.012
fbln1	fibulin 1	0.012
pax5	paired box gene 5	0.012
pcdh8	protocadherin 8	0.012
sim1a	single-minded homolog 1a (Drosophila)	0.012
apln	apelin	0.012
gbx2	gastrulation brain homeo box 2	0.012
si:dkeyp-63d11.7	si:dkeyp-63d11.7	0.012
per2	period homolog 2 (Drosophila)	0.012
pou4f2	POU domain, class 4, transcription factor 2	0.012
nadl1.1	neural adhesion molecule L1.1	0.012
ets1a	v-ets erythroblastosis virus E26 oncogene homolog 1a	0.012
hoxb8b	homeo box B8b	0.012
chrna2a	cholinergic receptor, nicotinic, alpha polypeptide 2a (neuronal)	0.011
skia	nuclear oncoprotein skia	0.011
nkx1.2lb	NK1 transcription factor related 2-like,b	0.011
ripply1	ripply1	0.011
gata6	GATA-binding protein 6	0.011
hoxa11a	homeo box A11a	0.011
ascl1b	achaete-scute complex-like 1b (Drosophila)	0.011
tgfbi	transforming growth factor, beta-induced	0.011
pcf11	cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)	0.011
bmp2a	bone morphogenetic protein 2a	0.011
foxa1	forkhead box A1	0.011
evx1	even-skipped homeobox 1	0.011
slc4a2a	solute carrier family 4, anion exchanger, member 2a	0.011
mafg2	v-maf musculoaponeurotic fibrosarcoma oncogene homolog g (avian), 2	0.010	Zebrafish
hapln1a	hyaluronan and proteoglycan link protein 1a	0.010
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.010
ogt.1	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 1	0.010
plce1	phospholipase C, epsilon 1	0.010
sema3aa	semaphorin 3aa	0.010
chrna4	cholinergic receptor, nicotinic, alpha 4	0.010
LOC569779	Heavy chain, Unconventional Myosin family member (hum-6)-like	0.010
supt6h	suppressor of Ty 6 homolog	0.010
mafg1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein g (avian), 1	0.010