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Danio rerio

12 genes annotated in zebrafish

neural plate pattern specification

The developmental process that results in the creation of defined areas or spaces within the neural plate to which cells respond and eventually are instructed to differentiate.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "neural plate pattern specification"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "neural plate pattern specification" (in gray)

Name	Description	Probability	Func Analog Organism
foxa2	forkhead box A2	0.966	Zebrafish
wnt4a	wingless-type MMTV integration site family, member 4a	0.787	Zebrafish
lft1	lefty1	0.501
hlxb9la	homeo box HB9 like a	0.481	Zebrafish
wnt3	wingless-type MMTV integration site family, member 3	0.470	Zebrafish
wnt2	wingless-type MMTV integration site family member 2	0.450	Zebrafish
flh	floating head	0.421
wnt7ba	wingless-type MMTV integration site family, member 7Ba	0.403	Zebrafish
hmx4	H6 family homeobox 4	0.367
wnt5b	wingless-type MMTV integration site family, member 5b	0.365	Zebrafish
hmx1	H6 homeo box 1	0.337
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.333
dkk1b	dickkopf 1b	0.267
wnt1	wingless-type MMTV integration site family, member 1	0.247	Zebrafish
sox2	SRY-box containing gene 2	0.238
gbx2	gastrulation brain homeo box 2	0.237	Zebrafish
wnt11	wingless-type MMTV integration site family, member 11	0.229
znf503	zinc finger protein 503	0.215
ephb4b	eph receptor B4b	0.206
wnt8b	wingless-type MMTV integration site family, member 8b	0.202
pitx2	paired-like homeodomain transcription factor 2	0.192
tbx1	T-box 1	0.188
sox10	SRY-box containing gene 10	0.178
dharma	dharma	0.169	Zebrafish
wnt10a	wingless-type MMTV integration site family, member 10a	0.169	Zebrafish
gbx1	gastrulation brain homeobox 1	0.162
wif1	wnt inhibitory factor 1	0.155
ndr2	nodal-related 2	0.155
ntla	no tail a	0.152
dld	deltaD	0.149
foxi3b	forkhead box I3b	0.146	Zebrafish
hlxb9lb	homeo box HB9 like b	0.145	Zebrafish
fzd8a	frizzled homolog 8a	0.145
lmx1b.1	LIM homeobox transcription factor 1, beta 1	0.143
col2a1a	collagen type II, alpha-1a	0.141
frzb	frizzled-related protein	0.135	Zebrafish
ippk	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	0.124
gli1	GLI-Kruppel family member 1	0.119
wnt10b	wingless-type MMTV integration site family, member 10b	0.117	Zebrafish
LOC566708	FL cytokine receptor-like	0.116
cdx4	caudal type homeo box transcription factor 4	0.113
smad9	MAD homolog 9 (Drosophila)	0.103
fzd7a	frizzled homolog 7a	0.101
ctsl1b	cathepsin L, 1 b	0.097
sfrp1a	secreted frizzled-related protein 1a	0.096
pcdh18b	protocadherin 18b	0.095
sfrp1b	secreted frizzled-related protein 1b	0.092
lmo4a	LIM domain only 4a	0.090
tfec	transcription factor EC	0.088
zic6	zic family member 6	0.085
wnt9a	wingless-type MMTV integration site family, member 9A	0.084	Zebrafish
grem2	gremlin 2, cysteine knot superfamily	0.083
lhx5	LIM homeobox 5	0.083
admp	anti-dorsalizing morphogenic protein	0.083
cx27.5	connexin 27.5	0.083
lef1	lymphocyte enhancer binding factor 1	0.082
eya1	eyes absent homolog 1	0.081
irf6	interferon regulatory factor 6	0.079
lhx1b	LIM homeobox 1b	0.079
glcea	glucuronyl C5-epimerase a	0.078
spry2	sprouty homolog 2	0.075
dscam	Down syndrome cell adhesion molecule	0.074
eng2a	engrailed 2a	0.072
wnt3a	wingless-type MMTV integration site family, member 3A	0.071	Zebrafish
foxi3a	forkhead box I3a	0.071	Zebrafish
vsx2	visual system homeobox 2	0.070
fgf3	fibroblast growth factor 3	0.068
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.064
otx1b	orthodenticle homolog 1b	0.063
irx3a	iroquois homeobox protein 3a	0.062
fn1	fibronectin 1	0.062
vsx1	visual system homeobox 1 homolog, chx10-like	0.062
wnt7bb	wingless-type MMTV integration site family, member 7Bb	0.060
wnt4b	wingless-type MMTV integration site family, member 4b	0.060	Zebrafish
zgc:171495	zgc:171495	0.058
foxa1	forkhead box A1	0.057	Zebrafish
amotl2a	angiomotin like 2a	0.056
tfe3b	transcription factor binding to IGHM enhancer 3b	0.055
ihha	Indian hedgehog homolog a	0.055
tal2	T-cell acute lymphocytic leukemia 2	0.055
map2k4a	mitogen-activated protein kinase kinase 4a	0.055
msxb	muscle segment homeobox B	0.054
twist3	twist3	0.052
med12	mediator of RNA polymerase II transcription, subunit 12 homolog	0.050
olig4	oligodendrocyte transcription factor 4	0.050
nkx6.1	NK6 transcription factor related, locus 1 (Drosophila)	0.050
hoxb1a	homeo box B1a	0.050
nrarpa	notch-regulated ankyrin repeat protein a	0.049
gpc4	glypican 4	0.049
hnf1ba	HNF1 homeobox Ba	0.049
wnt9b	wingless-type MMTV integration site family, member 9B	0.049	Zebrafish
nog1	noggin 1	0.049	Human
lmx1b.2	LIM homeobox transcription factor 1, beta 2	0.048
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.048
sox21b	SRY-box containing gene 21 b	0.047
mnx1	motor neuron and pancreas homeobox 1	0.046	Zebrafish
nkx2.3	NK2 transcription factor related 3	0.046
LOC100000687	signal peptide, CUB and EGF-like domain-containing protein 3-like	0.045
tp63	tumor protein p63	0.045
hoxd4a	homeo box D4a	0.045
fzd10	frizzled homolog 10	0.044	Zebrafish
mib	mind bomb	0.043
smad7	MAD, mothers against decapentaplegic homolog 7 (Drosophila)	0.041
six4b	sine oculis homeobox homolog 4b	0.041
dab1b	disabled homolog 1b (Drosophila)	0.041
wnt16	wingless-type MMTV integration site family, member 16	0.040
dact1	dapper homolog 1, antagonist of beta-catenin (xenopus)	0.040
cpa2	carboxypeptidase A2 (pancreatic)	0.038
wnt8a	wingless-type MMTV integration site family, member 8a	0.038
twist1a	twist1a	0.036
gsc	goosecoid	0.035
rnasel1	ribonuclease like 1	0.035
sox32	SRY-box containing gene 32	0.035
bmper	BMP binding endothelial regulator	0.034
acvr1l	activin A receptor, type I like	0.034
msxe	muscle segment homeobox E	0.034
lhx3	LIM homeobox 3	0.033
sox19a	SRY-box containing gene 19a	0.033
irx1b	iroquois homeobox protein 1, b	0.032
foxc1a	forkhead box C1a	0.031
edn1	endothelin 1	0.030
dlc	deltaC	0.030
sox21a	SRY-box containing gene 21a	0.029
fgf8b	fibroblast growth factor 8 b	0.029
gli2a	GLI-Kruppel family member GLI2a	0.029
otx1a	orthodenticle homolog 1a	0.028
prdm14	PR domain containing 14	0.028
inka1a	induced in neural crest by AP2, 1a	0.027
dbx1a	developing brain homeobox 1a	0.026
map2k4b	mitogen-activated protein kinase kinase 4b	0.026
mbtps1	membrane-bound transcription factor protease, site 1	0.026
pdgfaa	platelet-derived growth factor alpha a	0.026
dkk3	dickkopf homolog 3 (Xenopus laevis)	0.025
cx30.3	connexin 30.3	0.025
olig2	oligodendrocyte lineage transcription factor 2	0.024
foxa3	forkhead box A3	0.024
tpbgl	trophoblast glycoprotein-like	0.024
pcdh18a	protocadherin 18a	0.024
fbn2b	fibrillin 2b	0.024
celsr2	cadherin, EGF LAG seven-pass G-type receptor 2 and cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	0.023
pcsk5b	proprotein convertase subtilisin/kexin type 5b	0.023
sp5l	Sp5 transcription factor-like	0.023
gro2	groucho 2	0.023
prdm1a	PR domain containing 1a, with ZNF domain	0.023
ctbp2	C-terminal binding protein 2	0.023
nkx3.2	NK3 homeobox 2	0.022
otx2	orthodenticle homolog 2	0.022
nkx2.2b	NK2 transcription factor related 2b	0.022
fzd8b	frizzled homolog 8b	0.022	Zebrafish
notch1a	notch homolog 1a	0.022
optc	opticin	0.022
znf711	zinc finger protein 711	0.022
col9a1	collagen, type IX, alpha 1	0.021
lrp2	low density lipoprotein-related protein 2	0.021
gdf6b	growth differentiation factor 6b	0.021
gdf6a	growth differentiation factor 6a	0.021
rel	v-rel reticuloendotheliosis viral oncogene homolog	0.021
hoxa2b	homeo box A2b	0.021
sb:cb166	sb:cb166	0.021
zic2a	zic family member 2 (odd-paired homolog, Drosophila), a	0.020
wnt5a	wingless-type MMTV integration site family, member 5a	0.020	Zebrafish
cfl2l	cofilin 2, like	0.020
emx3	empty spiracles homeobox 3	0.019
hesx1	homeo box (expressed in ES cells) 1	0.019
shha	sonic hedgehog a	0.019
ek1	eph-like kinase 1	0.019
tfap2c	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	0.019
nanos3	nanos homolog 3	0.019
her1	hairy-related 1	0.018
bmp4	bone morphogenetic protein 4	0.018
nog3	noggin 3	0.018
wnt7aa	wingless-type MMTV integration site family, member 7Aa	0.018	Zebrafish
hgfa	hepatocyte growth factor a	0.018
six2a	sine oculis-related homeobox 2a	0.018
fgf17	fibroblast growth factor 17	0.018
bty	bloodthirsty	0.018
hs3st1l2	heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2	0.018
gata2a	GATA-binding protein 2a	0.017
epb4.1l4	erythrocyte protein band 4.1-like 4	0.017
pggt1b	protein geranylgeranyltransferase type I, beta subunit	0.017
lratb	lecithin retinol acyltransferase b (phosphatidylcholine--retinol O-acyltransferase b)	0.017
hoxb5a	homeo box B5a	0.017
boc	brother of CDO	0.017
ext1a	exostoses (multiple) 1a	0.017
hmgcrb	3-hydroxy-3-methylglutaryl-Coenzyme A reductase b	0.017
jag2	jagged 2	0.016
slc2a10	solute carrier family 2 (facilitated glucose transporter), member 10	0.016
foxb1.1	forkhead box B1.1	0.016	Zebrafish
msxc	muscle segment homeobox C	0.016
sox17	SRY-box containing gene 17	0.016
bmpr1aa	bone morphogenetic protein receptor, type 1aa	0.016	Mouse
sim2	single-minded homolog 2 (Drosophila)	0.016
prtga	protogenin homolog a (Gallus gallus)	0.016
tbx16	T-box gene 16	0.016
bmp1a	bone morphogenetic protein 1a	0.016
met	met proto-oncogene (hepatocyte growth factor receptor)	0.015
nkx6.2	NK6 transcription factor related, locus 2	0.015
og9x	OG9 homeobox gene	0.015
vent	ventral expressed homeobox	0.015
fgfrl1b	fibroblast growth factor receptor-like 1b	0.015
smad3b	MAD, mothers against decapentaplegic homolog 3b (Drosophila)	0.015
epha4b	eph receptor A4b	0.015
grhl1	grainyhead-like 1 (Drosophila)	0.015
six3a	sine oculis homeobox homolog 3a	0.015
gli2b	GLI-Kruppel family member GLI2b	0.015
mycn	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	0.015
rnf41	ring finger protein 41	0.014
vegfc	vascular endothelial growth factor c	0.014
her3	hairy-related 3	0.014
csnk1da	casein kinase 1, delta a	0.014
zgc:114181	zgc:114181	0.014
zgc:111944	zgc:111944	0.014
tnnt2a	troponin T2a, cardiac	0.014
lzts2a	leucine zipper, putative tumor suppressor 2a	0.014
snai1b	snail homolog 1b (Drosophila)	0.014
notch3	notch homolog 3	0.014
pax4	paired box 4	0.014
fbp1b	fructose-1,6-bisphosphatase 1b	0.013
zbtb4	zinc finger and BTB domain containing 4	0.013
ctgf	connective tissue growth factor	0.013
foxl1	forkhead box L1	0.013	Zebrafish
fgf10a	fibroblast growth factor 10a	0.013
rargb	retinoic acid receptor, gamma b	0.013
col11a2	collagen type XI alpha-2	0.013
cyp26c1	cytochrome P450, family 26, subfamily C, polypeptide 1	0.013
ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.012
her5	hairy-related 5	0.012
ass1	argininosuccinate synthetase 1	0.012
si:dkey-273o13.1	si:dkey-273o13.1	0.012
pea3	ETS-domain transcription factor pea3	0.012
il17rd	interleukin 17 receptor D	0.012
mpped2	metallophosphoesterase domain containing 2	0.012
irx1a	iroquois homeobox protein 1, a	0.012
inab	internexin neuronal intermediate filament protein, alpha b	0.012
bcl2	B-cell leukemia/lymphoma 2	0.012
heyl	hairy/enhancer-of-split related with YRPW motif-like	0.012
pdlim3a	PDZ and LIM domain 3a	0.012
dao.2	D-amino-acid oxidase 2	0.011
ildr1b	immunoglobulin-like domain containing receptor 1b	0.011
dlx4b	distal-less homeobox gene 4b	0.011
pkd2	polycystic kidney disease 2	0.011
foxa	forkhead box A sequence	0.011
zgc:171802	zgc:171802	0.011
pitx1	paired-like homeodomain transcription factor 1	0.010
pcdh19	protocadherin 19	0.010
map2k7	mitogen-activated protein kinase kinase 7	0.010
adipoql2	adiponectin, C1Q and collagen domain containing, like 2	0.010
spon2b	spondin 2b, extracellular matrix protein	0.010
adipoql	adiponectin, C1Q and collagen domain containing, like	0.010
sult1st4	sulfotransferase family 1, cytosolic sulfotransferase 4	0.010