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Danio rerio

11 genes annotated in zebrafish

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regulation of mesoderm development

GO:2000380

Any process that modulates the frequency, rate or extent of mesoderm development.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "regulation of mesoderm development"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "regulation of mesoderm development" (in gray)

Name	Description	Probability	Func Analog Organism
vox	ventral homeobox	0.809
vent	ventral expressed homeobox	0.721
tbx6	T-box gene 6	0.666
bmp4	bone morphogenetic protein 4	0.579
foxd5	forkhead box D5	0.514
mespa	mesoderm posterior a	0.486	Mouse
sox17	SRY-box containing gene 17	0.458	Mouse
pcdh8	protocadherin 8	0.423
acvr1b	activin A receptor, type IB	0.410
tbx16	T-box gene 16	0.369
gata3	GATA-binding protein 3	0.351
lft1	lefty1	0.329
hmx4	H6 family homeobox 4	0.325	Worm
zgc:113210	zgc:113210	0.308
chd	chordin	0.307
pax8	paired box gene 8	0.280
vsx2	visual system homeobox 2	0.265	Zebrafish
hoxb3a	homeo box B3a	0.248	Zebrafish
msxc	muscle segment homeobox C	0.244
dab1a	disabled homolog 1a (Drosophila)	0.239
bmp7a	bone morphogenetic protein 7a	0.237
irf6	interferon regulatory factor 6	0.229
nkd1	naked cuticle homolog 1 (Drosophila)	0.197
gro2	groucho 2	0.187
bmp2b	bone morphogenetic protein 2b	0.187
col1a2	collagen, type I, alpha 2	0.185
her7	hairy and enhancer of split related-7	0.178
foxi1	forkhead box I1	0.174
tbx1	T-box 1	0.166
mespb	mesoderm posterior b	0.162	Mouse
admp	anti-dorsalizing morphogenic protein	0.151
hoxa3a	homeo box A3a	0.149	Zebrafish
foxb1.2	forkhead box B1.2	0.146
gli1	GLI-Kruppel family member 1	0.141
hoxb4a	homeo box B4a	0.136
eve1	even-skipped-like1	0.130
lhx1b	LIM homeobox 1b	0.125
hoxa11a	homeo box A11a	0.118
eya1	eyes absent homolog 1	0.118
sox32	SRY-box containing gene 32	0.110	Mouse
vsx1	visual system homeobox 1 homolog, chx10-like	0.109
evx1	even-skipped homeobox 1	0.102	Zebrafish
dharma	dharma	0.099
dhrs3a	dehydrogenase/reductase (SDR family) member 3a	0.097
epb41	erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)	0.097
gata2a	GATA-binding protein 2a	0.096
tbx20	T-box 20	0.092
epha7	eph receptor A7	0.087
hoxd4a	homeo box D4a	0.083
fgf3	fibroblast growth factor 3	0.083
fzd10	frizzled homolog 10	0.081
fgf10a	fibroblast growth factor 10a	0.077
dmrt3a	doublesex and mab-3 related transcription factor 3a	0.076
slit3	slit (Drosophila) homolog 3	0.074
foxn4	forkhead box N4	0.072
efna5a	ephrin A5a	0.068
fgfr1a	fibroblast growth factor receptor 1a	0.062	Mouse
notum3	notum 3	0.060
hoxa2b	homeo box A2b	0.059
wnt3	wingless-type MMTV integration site family, member 3	0.058
og9x	OG9 homeobox gene	0.057
hoxb2a	homeo box B2a	0.055
tll1	tolloid-like 1	0.055
lhx5	LIM homeobox 5	0.054
hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	0.053
flh	floating head	0.052
chrna2a	cholinergic receptor, nicotinic, alpha polypeptide 2a (neuronal)	0.051
pnx	posterior neuron-specific homeobox	0.051
tp73	tumor protein p73	0.049
rad21	RAD21 homolog (S. pombe)	0.049
tp63	tumor protein p63	0.049	Mouse
LOC572344	hypothetical protein LOC572344	0.047
neurod4	neurogenic differentiation 4	0.046
zgc:193933	zgc:193933	0.046
ryk	receptor-like tyrosine kinase	0.046
brd4	bromodomain containing 4	0.045
sb:cb81	sb:cb81	0.044
hmx3	homeo box (H6 family) 3	0.042	Worm
spns2	spinster homolog 2 (Drosophila)	0.042
sim1a	single-minded homolog 1a (Drosophila)	0.042
tjp1	tight junction protein 1 (zona occludens 1)	0.040
rxrbb	retinoid x receptor, beta b	0.040
wnt5b	wingless-type MMTV integration site family, member 5b	0.038
has2	hyaluronan synthase 2	0.037
alas2	aminolevulinate, delta-, synthetase 2	0.037
nkd2	naked cuticle homolog 2 and naked 2a	0.036
vax2	ventral anterior homeobox 2	0.036
ephb4b	eph receptor B4b	0.036
ved	ventrally expressed dharma/bozozok antagonist	0.036
jag1a	jagged 1a	0.036
nkx1.2la	NK1 transcription factor related 2-like,a	0.036
hnf1ba	HNF1 homeobox Ba	0.035
elk4	ELK4, ETS-domain protein	0.035
hars	histidyl-tRNA synthetase	0.034
sp5l	Sp5 transcription factor-like	0.034
ext1a	exostoses (multiple) 1a	0.034
wif1	wnt inhibitory factor 1	0.033
crestin	crestin	0.033
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.033
mesp2	mesoderm posterior 2 homolog (mouse)	0.033
gdf6b	growth differentiation factor 6b	0.032
wnt4a	wingless-type MMTV integration site family, member 4a	0.032
myo10l1	myosin X-like 1	0.032
six4b	sine oculis homeobox homolog 4b	0.032
wnt9a	wingless-type MMTV integration site family, member 9A	0.032
klf2a	Kruppel-like factor 2a	0.032
fzd5	frizzled homolog 5	0.031
cdx4	caudal type homeo box transcription factor 4	0.031
nipblb	novel protein similar to vertebrate Nipped-B homolog and nipped-b homolog b (Drosophila)	0.030
spaw	southpaw	0.030
vgll4l	vestigial like 4 like	0.029
wnt8b	wingless-type MMTV integration site family, member 8b	0.029
ssb	Sjogren syndrome antigen B (autoantigen La)	0.029
runx3	runt-related transcription factor 3	0.029
notch3	notch homolog 3	0.029	Zebrafish
krt5	keratin 5	0.028
dkk1b	dickkopf 1b	0.028
slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	0.027
nog2	noggin 2	0.027
pou2f1a	POU class 2 homeobox 1a	0.027
gng3	guanine nucleotide binding protein (G protein), gamma 3	0.027
tfap2c	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	0.027
hoxc6a	homeo box C6a	0.027
plagl2	pleiomorphic adenoma gene-like 2	0.026
fgf4	fibroblast growth factor 4	0.026
tbx18	T-box 18	0.026
six1b	sine oculis homeobox homolog 1b	0.025
si:dkeyp-50f5.1	si:dkeyp-50f5.1	0.025
col14a1	collagen, type XIV, alpha 1	0.025
sptb	spectrin, beta, erythrocytic	0.024
piwil2	piwi-like 2 (Drosophila)	0.023
sfrp1a	secreted frizzled-related protein 1a	0.023
prickle1a	prickle-like 1 (Drosophila) a	0.023
dlc	deltaC	0.023
rx1	retinal homeobox gene 1	0.023
fbln1	fibulin 1	0.023
ier2	immediate early response 2	0.022
hpca	hippocalcin	0.022
krt4	keratin 4	0.022
si:ch211-173o4.2	si:ch211-173o4.2	0.021
LOC100000500	sclerostin-like	0.021
tal1	T-cell acute lymphocytic leukemia 1	0.021
camk2g1	calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 1	0.021
ascl1b	achaete-scute complex-like 1b (Drosophila)	0.021
klf2b	Kruppel-like factor 2b	0.021
bmp2a	bone morphogenetic protein 2a	0.020
rx2	retinal homeobox gene 2	0.020
szl	sizzled	0.020
mxtx1	mix-type homeobox gene 1	0.020
actn1	actinin, alpha 1	0.020
nanos3	nanos homolog 3	0.020
sall4	sal-like 4 (Drosophila)	0.018
fzd7b	frizzled homolog 7b	0.018
setd8a	SET domain containing (lysine methyltransferase) 8a	0.018
tbx2b	T-box 2b	0.018
msgn1	mesogenin 1	0.018
mll	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)	0.018
foxa3	forkhead box A3	0.018
tagln2	transgelin 2	0.018
nrarpb	notch-regulated ankyrin repeat protein b	0.018
lypd6	LY6/PLAUR domain containing 6	0.017
grem2	gremlin 2, cysteine knot superfamily	0.017
vangl2	vang-like 2 (van gogh, Drosophila)	0.017
foxg1a	forkhead box G1a	0.017
ptgs2a	prostaglandin-endoperoxide synthase 2a	0.017
cxcr4b	chemokine (C-X-C motif), receptor 4b	0.017
rhoub	ras homolog gene family, member Ub	0.017
twist3	twist3	0.016
nog1	noggin 1	0.016
mib	mind bomb	0.016
slc8a4b	solute carrier family 8 (sodium/calcium exchanger), member 4b	0.016
gfra1b	gdnf family receptor alpha 1b	0.016
hoxa9a	homeo box A9a	0.015
her1	hairy-related 1	0.015
cnn2	calponin 2	0.015
tnfsf10l2	tumor necrosis factor (ligand) superfamily, member 10 like 2	0.015
wnt8a	wingless-type MMTV integration site family, member 8a	0.015
sox2	SRY-box containing gene 2	0.015
zgc:153115	zgc:153115	0.015
foxi3a	forkhead box I3a	0.015
tbx4	T-box 4	0.015
snai1b	snail homolog 1b (Drosophila)	0.014
otx1a	orthodenticle homolog 1a	0.014
fgf24	fibroblast growth factor 24	0.014
lhx2a	LIM homeobox 2a	0.014
hoxb8a	homeo box B8a	0.014
frem3	Fras1 related extracellular matrix 3	0.014
odz4	odd Oz/ten-m homolog 4	0.014
notch2	notch homolog 2	0.014	Zebrafish
col5a1	procollagen, type V, alpha 1	0.013
axin1	axin 1	0.013
plekhh1	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	0.013
ncl1	nicalin	0.013
fech	ferrochelatase	0.013
reln	reelin	0.013
tomm40	translocase of outer mitochondrial membrane 40 homolog (yeast)	0.013
pax2a	paired box gene 2a	0.013
odc1	ornithine decarboxylase 1	0.013
hbbe3	hemoglobin beta embryonic-3	0.013
dlx4b	distal-less homeobox gene 4b	0.013
hoxc1a	homeo box C1a	0.012
irx4a	iroquois homeobox protein 4a	0.012
sec11a	SEC11 homolog A (S. cerevisiae)	0.012
ccdc47	coiled-coil domain containing 47	0.012
dnmt4	DNA (cytosine-5-)-methyltransferase 4	0.012
notch1b	notch homolog 1b	0.012	Zebrafish
sema3h	semaphorin 3h	0.012
smad3b	MAD, mothers against decapentaplegic homolog 3b (Drosophila)	0.012
rhov	ras homolog gene family, member V	0.012
ndr1	nodal-related 1	0.012
msxe	muscle segment homeobox E	0.012
oprm1	opioid receptor, mu 1	0.012
fstl1b	follistatin-like 1b	0.012
msxa	muscle segment homeobox A	0.012
phf17	PHD finger protein 17	0.012
ephb4a	eph receptor B4a	0.011
tbx2a	T-box gene 2a	0.011
bmpr1ab	bone morphogenetic protein receptor, type 1ab	0.011
eomesa	eomesodermin homolog a	0.011
her3	hairy-related 3	0.011
cebp1	CCAAT/enhancer binding protein (C/EBP) 1	0.011
tbx5a	T-box 5a	0.011
actn4	actinin, alpha 4	0.011
sox9b	SRY-box containing gene 9b	0.011
stm	starmaker	0.011
gro1	groucho 1	0.011
rbm39a	RNA binding motif protein 39a	0.011
hoxd13a	homeo box D13a	0.011
ascl1a	achaete-scute complex-like 1a (Drosophila)	0.011
ncl	nucleolin	0.011
ogt.2	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 2	0.011
isl2a	islet2a	0.011
cdx1a	caudal type homeo box transcription factor 1 a	0.011
siah2l	seven in absentia homolog 2 (Drosophila)-like	0.011
col8a1a	collagen, type VIII, alpha 1a	0.010
ndr2	nodal-related 2	0.010
pkd2	polycystic kidney disease 2	0.010
pitx3	paired-like homeodomain transcription factor 3	0.010
zgc:92360	zgc:92360	0.010
pld1a	phospholipase D1a	0.010
srf	serum response factor	0.010
postn	periostin, osteoblast specific factor	0.010