IMP

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Danio rerio

1 genes annotated in zebrafish

protein modification by small protein removal

A protein modification process in which one or more covalently attached groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are removed from a target protein.

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "protein modification by small protein removal"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "protein modification by small protein removal" (in gray)

Name	Description	Probability	Func Analog Organism
hspa4b	heat shock protein 4b	0.089
usp5	ubiquitin specific protease 5	0.080	Human Fly
hat1	histone acetyltransferase 1	0.075
sb:cb134	sb:cb134	0.071
glrx3	glutaredoxin 3	0.057
gnat2	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2	0.054
srsf1a	serine/arginine-rich splicing factor 1a	0.053
eif2d	eukaryotic translation initiation factor 2D	0.051
pfn2l	profilin 2 like	0.047
rcv1	recoverin	0.045
cltcb	clathrin, heavy polypeptide b (Hc)	0.045
psmc6	proteasome (prosome, macropain) 26S subunit, ATPase, 6	0.043
cul1a	cullin 1a	0.042
pde6c	phosphodiesterase 6C, cGMP-specific, cone, alpha prime	0.042
psmd13	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	0.042
psmd6	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	0.041
wu:fb80e01	wu:fb80e01	0.040
sumo1	SMT3 suppressor of mif two 3 homolog 1 (yeast)	0.040
usp14	ubiquitin specific protease 14 (tRNA-guanine transglycosylase)	0.037	Human
srsf1b	serine/arginine-rich splicing factor 1b	0.035
psmd12	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	0.034	Yeast
arpp19a	cAMP-regulated phosphoprotein 19a	0.034
nkx6.2	NK6 transcription factor related, locus 2	0.034
guk1	guanylate kinase 1	0.033
uba1	ubiquitin-like modifier activating enzyme 1	0.032
ppil4	peptidylprolyl isomerase (cyclophilin)-like 4	0.032
mlst8	MTOR associated protein, LST8 homolog (S. cerevisiae)	0.031
zgc:55943	zgc:55943	0.031
pgam1b	phosphoglycerate mutase 1b	0.031
ppp2r1a	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.030
crx	cone-rod homeobox	0.030
cul3a	cullin 3a	0.029
opn1sw2	opsin 1 (cone pigments), short-wave-sensitive 2	0.029
psmc5	proteasome (prosome, macropain) 26S subunit, ATPase, 5	0.029
cops3	COP9 constitutive photomorphogenic homolog subunit 3	0.028
psmc2	proteasome (prosome, macropain) 26S subunit, ATPase 2	0.028
smc3	structural maintenance of chromosomes 3	0.028
slc25a3a	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3a	0.027
gc3	guanylyl cyclase 3	0.027
ash2l	ash2 (absent, small, or homeotic)-like (Drosophila)	0.027
tfam	transcription factor A, mitochondrial	0.027
rcbtb1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	0.027
gnat1	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1	0.026
zgc:153225	zgc:153225	0.026
glmna	glomulin, FKBP associated protein a	0.026
ubin	ataxin-1 ubiquitin-like interacting protein	0.024
nae1	nedd8 activating enzyme E1 subunit 1	0.024
dnaja1l	DnaJ (Hsp40) homolog, subfamily A, member 1, like	0.024
abcf1	ATP-binding cassette, sub-family F (GCN20), member 1	0.024
zgc:112958	zgc:112958	0.023
zgc:86870	zgc:86870	0.023
cops5	COP9 constitutive photomorphogenic homolog subunit 5	0.023
ube2i2	ubiquitin-conjugating enzyme E2I2	0.023
nrp1b	neuropilin 1b	0.022
strada	ste20-related kinase adaptor alpha	0.022
hdac8	histone deacetylase 8	0.022
vps35	vacuolar protein sorting 35 (yeast)	0.022
psmc4	proteasome (prosome, macropain) 26S subunit, ATPase, 4	0.021
gdi2	GDP dissociation inhibitor 2	0.021
guca1c	guanylate cyclase activator 1C	0.021
pdcd4a	programmed cell death 4a	0.021
zgc:103652	zgc:103652	0.020
rbp4l	retinol binding protein 4, like	0.020
vcp	valosin containing protein	0.020	Human
hars	histidyl-tRNA synthetase	0.020
rpl37	ribosomal protein L37	0.020
nmt2	N-myristoyltransferase 2	0.020
arl4aa	ADP-ribosylation factor-like 4aa	0.020
sart1	squamous cell carcinoma antigen recognised by T cells	0.019
zgc:55466	zgc:55466	0.019
smarcb1a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a	0.019
rpe65a	retinal pigment epithelium-specific protein 65a	0.019
ppp2cb	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	0.019
txnrd3	thioredoxin reductase 3	0.019
rabif	RAB interacting factor	0.019
psmd11b	proteasome (prosome, macropain) 216S subunit, non-ATPase, 11b	0.019
dnajc3	DnaJ (Hsp40) homolog, subfamily C, member 3	0.018
zgc:64051	zgc:64051	0.018
ywhabb	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide b	0.018
zgc:73359	zgc:73359	0.018
im:7141132	im:7141132	0.018
rsrc2	arginine/serine-rich coiled-coil 2	0.018
caprin1a	cell cycle associated protein 1a	0.018
psmd9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	0.017
ispd	isoprenoid synthase domain containing	0.017
zgc:55347	zgc:55347	0.017
phf6	PHD finger protein 6	0.017
bag6	BCL2-associated athanogene 6	0.017
ppp2r2d	protein phosphatase 2, regulatory subunit B, delta isoform	0.017
ppme1	protein phosphatase methylesterase 1	0.017
eif2b4	eukaryotic translation initiation factor 2B, subunit 4 delta	0.017
ip6k2	inositol hexaphosphate kinase 2	0.017
zgc:64133	zgc:64133	0.017
tubgcp5	tubulin, gamma complex associated protein 5	0.016
morf4l1	mortality factor 4 like 1	0.016
prpf4b	PRP4 pre-mRNA processing factor 4 homolog B	0.016
yes1	v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1	0.016
tra2b	transformer 2 beta homolog (Drosophila)	0.016
immt	inner membrane protein, mitochondrial (mitofilin)	0.016
hnrnpul1	heterogeneous nuclear ribonucleoprotein U-like 1	0.016
tlr4bb	toll-like receptor 4b, duplicate b	0.016
ldhd	lactate dehydrogenase D	0.016
wipi2	WD repeat domain, phosphoinositide interacting 2	0.016
si:ch211-59d15.5	si:ch211-59d15.5	0.016
nme6	non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	0.016
tnrc5	trinucleotide repeat containing 5	0.016
tbc1d23	TBC1 domain family, member 23	0.015
zgc:92086	zgc:92086	0.015
prkcbp1l	protein kinase C binding protein 1, like	0.015
slka	STE20-like kinase a	0.015
vps52	vacuolar protein sorting 52 (yeast)	0.015
zgc:56085	zgc:56085	0.015
supt6h	suppressor of Ty 6 homolog	0.015
usp4	ubiquitin specific protease 4 (proto-oncogene)	0.015	Human
rs1	retinoschisis (X-linked, juvenile) 1	0.015
vps18	vacuolar protein sorting protein 18	0.015
hmga1a	high mobility group AT-hook 1a	0.015
gtf2h2	general transcription factor IIH, polypeptide 2	0.015
psmc1a	proteasome (prosome, macropain) 26S subunit, ATPase, 1a	0.015
wrb	tryptophan rich basic protein	0.015
gmppaa	GDP-mannose pyrophosphorylase Aa	0.015
nucks1a	nuclear casein kinase and cyclin-dependent kinase substrate 1a	0.015
tpi1b	triosephosphate isomerase 1b	0.015
vps37a	vacuolar protein sorting 37A	0.014
amfr	autocrine motility factor receptor	0.014
usp3	ubiquitin specific peptidase 3	0.014
fam50a	family with sequence similarity 50, member A	0.014
txnrd1	thioredoxin reductase 1	0.014
lztfl1	leucine zipper transcription factor-like 1	0.014
bbs2	Bardet-Biedl syndrome 2	0.014
sps2	selenophosphate synthetase 2	0.014
pcyt2	phosphate cytidylyltransferase 2, ethanolamine	0.014
mppe1	metallophosphoesterase 1	0.014
t54l	T54 protein-like	0.014
arpc1a	actin related protein 2/3 complex, subunit 1A	0.014
nrp2a	neuropilin 2a	0.014
ap3s2	adaptor-related protein complex 3, sigma 2 subunit	0.014
actr1	ARP1 actin-related protein 1, centractin (yeast)	0.014
gadd45ba	growth arrest and DNA-damage-inducible, beta a	0.014
pbp	phosphatidylethanolamine binding protein	0.014
sod1	superoxide dismutase 1, soluble	0.014
zgc:56178	zgc:56178	0.014
b4galt6	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6	0.014
sb:cb429	sb:cb429	0.014
LOC555504	novel protocadherin protein	0.014
crygm2d1	crystallin, gamma M2d1	0.014
gnb3b	guanine nucleotide binding protein (G protein), beta polypeptide 3b	0.014
zgc:152954	zgc:152954	0.014
copb1	coatomer protein complex, subunit beta 1	0.014
zgc:112080	zgc:112080	0.013
sod2	superoxide dismutase 2, mitochondrial	0.013
nucks1b	nuclear casein kinase and cyclin-dependent kinase substrate 1b	0.013
zgc:92139	zgc:92139	0.013
foxg1b	forkhead box G1b	0.013
zgc:66477	zgc:66477	0.013
slc6a8	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	0.013
psmd11a	proteasome (prosome, macropain) 216S subunit, non-ATPase, 11a	0.013
scrn3	secernin 3	0.013
psmd1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	0.013
si:ch211-51m24.3	si:ch211-51m24.3	0.013
zgc:55870	zgc:55870	0.013
zgc:56340	zgc:56340	0.013
atg12	ATG12 autophagy related 12 homolog (S. cerevisiae)	0.013
fam136a	family with sequence similarity 136, member A	0.013
nudcd2	NudC domain containing 2	0.013
pigu	phosphatidylinositol glycan anchor biosynthesis, class U	0.013
atrx	alpha thalassemia/mental retardation syndrome X-linked homolog (human)	0.013
slc9a8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	0.013
sirt6	sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae)	0.013
ppp2r4	protein phosphatase 2A activator, regulatory subunit 4	0.013
rpp14	ribonuclease P 14 subunit	0.013
ankra2	ankyrin repeat, family A (RFXANK-like), 2	0.013
nrl	neural retina leucine zipper	0.013
slc46a1	solute carrier family 46, member 1	0.013
rlbp1a	retinaldehyde binding protein 1a	0.013
aldh16a1	aldehyde dehydrogenase 16 family, member A1	0.013
seph	selenoprotein H	0.013
zgc:153892	zgc:153892	0.013
cltca	clathrin, heavy polypeptide a (Hc)	0.013
csrp2bp	cysteine and glycine-rich protein 2 binding protein	0.013
hsbp1	heat shock factor binding protein 1	0.013
nap1l4b	nucleosome assembly protein 1-like 4b	0.013
leng1	leukocyte receptor cluster (LRC) member 1	0.012
rho	rhodopsin	0.012
taf7	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	0.012
cand1	cullin-associated and neddylation-dissociated 1	0.012	Worm
ddx19	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast)	0.012
zgc:163016	zgc:163016	0.012
herpud2	HERPUD family member 2	0.012
im:7152557	im:7152557	0.012
chid1	chitinase domain containing 1	0.012
tubgcp2	tubulin, gamma complex associated protein 2	0.012
sms	spermine synthase	0.012
zgc:56148	zgc:56148	0.012
opn1sw1	opsin 1 (cone pigments), short-wave-sensitive 1	0.012
gtf2f2a	general transcription factor IIF, polypeptide 2a	0.012
slc1a2a	solute carrier family 1 (glial high affinity glutamate transporter), member 2a	0.012
zgc:110801	zgc:110801	0.012
nploc4	nuclear protein localization 4 homolog (S. cerevisiae)	0.012
slc30a5	solute carrier family 30 (zinc transporter), member 5	0.012
rab5c	RAB5C, member RAS oncogene family	0.012
nedd8	neural precursor cell expressed, developmentally down-regulated 8	0.012
mcfd2	multiple coagulation factor deficiency 2	0.012
mak16	MAK16 homolog (S. cerevisiae)	0.012
clgn	calmegin	0.012
snx6	sorting nexin 6	0.012
esd	esterase D/formylglutathione hydrolase	0.012
zgc:103670	zgc:103670	0.012
parp12b	poly (ADP-ribose) polymerase family, member 12b	0.012
prkrir	protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	0.012
cpsf3	cleavage and polyadenylation specific factor 3	0.012
rp42-pen	rp42 homolog (pending) and rp42 homolog	0.012
hsp90a.2	heat shock protein 90-alpha 2	0.012
psmb7	proteasome (prosome, macropain) subunit, beta type, 7	0.012
slc30a9	solute carrier family 30 (zinc transporter), member 9	0.012
anp32a	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	0.012
gmfb	glia maturation factor, beta	0.012
pex5	peroxisomal biogenesis factor 5	0.012
creld2	cysteine-rich with EGF-like domains 2	0.012
smap1	stromal membrane-associated protein 1	0.012
rogdi	rogdi homolog (Drosophila)	0.012
hnrnph1	heterogeneous nuclear ribonucleoprotein H1	0.012
vtg7	vitellogenin 7	0.012
arhgap12	Rho GTPase activating protein 12	0.012
cul1b	cullin 1b	0.012
klhl11	kelch-like 11 (Drosophila)	0.012
suz12b	suppressor of zeste 12 homolog (Drosophila) b	0.012
calcrla	calcitonin receptor-like a	0.012
hmgn3	high mobility group nucleosomal binding domain 3	0.012
calm2b	calmodulin 2b, (phosphorylase kinase, delta)	0.012
zgc:162213	zgc:162213	0.012
ck2a2a	casein kinase 2 alpha 2a	0.012
eif3ja	eukaryotic translation initiation factor 3, subunit Ja	0.012
gltscr1	glioma tumor suppressor candidate region gene 1	0.012
katnb1	katanin p80 (WD repeat containing) subunit B 1	0.011
ppil2	peptidylprolyl isomerase (cyclophilin)-like 2	0.011
fnta	farnesyltransferase, CAAX box, alpha	0.011
zgc:91931	zgc:91931	0.011
im:6907121	im:6907121	0.011
trim13	tripartite motif-containing 13	0.011
atxn7l3	ataxin 7-like 3	0.011
irbp	interphotoreceptor retinoid-binding protein	0.011
npat	nuclear protein, ataxia-telangiectasia locus	0.011
zgc:154089	zgc:154089	0.011
cbsa	cystathionine-beta-synthase a	0.011
lrrc40	leucine rich repeat containing 40	0.011
zgc:113409	zgc:113409	0.011
LOC569097	hypothetical protein LOC569097	0.011
LOC567965	rho GTPase-activating protein 7-like	0.011
fbln4	fibulin 4	0.011
grk7a	G-protein-coupled receptor kinase 7a	0.011
im:7135980	im:7135980	0.011
slc38a2	solute carrier family 38, member 2	0.011
tomm70a	translocase of outer mitochondrial membrane 70 homolog A (yeast)	0.011
zgc:110063	zgc:110063	0.011
fam164a	family with sequence similarity 164, member A	0.011
exoc7	exocyst complex component 7	0.011
vps53	vacuolar protein sorting 53 homolog (S. cerevisiae)	0.011
pgk1	phosphoglycerate kinase 1	0.011
grb10a	growth factor receptor-bound protein 10a	0.011
si:ch73-9j13.1	si:ch73-9j13.1	0.011
ccnl1	cyclin L1	0.011
tfip11	tuftelin interacting protein 11	0.011
sgta	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	0.011
nnt	nicotinamide nucleotide transhydrogenase	0.011
dnm1l	dynamin 1-like	0.011
zgc:193699	zgc:193699	0.011
cbx1a	chromobox homolog 1a (HP1 beta homolog Drosophila)	0.011
pcm1	pericentriolar material 1	0.011
ap2m1a	adaptor-related protein complex 2, mu 1 subunit, a	0.011
zgc:77001	zgc:77001	0.011
cap2	CAP, adenylate cyclase-associated protein, 2 (yeast)	0.011
lrrfip1a	leucine rich repeat (in FLII) interacting protein 1a	0.011
si:ch211-217g15.2	si:ch211-217g15.2	0.011
aanat2	arylalkylamine N-acetyltransferase	0.011
rab22a	RAB22A, member RAS oncogene family	0.011
rcc2	regulator of chromosome condensation 2	0.011
tfpi2	tissue factor pathway inhibitor 2	0.011
zgc:85683	zgc:85683	0.011
mcm3	MCM3 minichromosome maintenance deficient 3 (S. cerevisiae)	0.011
e4f1	E4F transcription factor 1	0.011
slc39a9	solute carrier family 39 (zinc transporter), member 9	0.011
psma6a	proteasome (prosome, macropain) subunit, alpha type, 6a	0.011
psmc3	proteasome (prosome, macropain) 26S subunit, ATPase, 3	0.011
mapk14b	mitogen-activated protein kinase 14b	0.011
hmox1	heme oxygenase (decycling) 1	0.011
ppm1bb	protein phosphatase, Mg2+/Mn2+ dependent, 1Bb	0.011
LOC321521	peptidyl-prolyl cis-trans isomerase D-like	0.011
birc2	baculoviral IAP repeat-containing 2	0.011
ndufs1	NADH dehydrogenase (ubiquinone) Fe-S protein 1	0.011
arpc5a	actin related protein 2/3 complex, subunit 5A	0.011
pgm1	phosphoglucomutase 1	0.011
chmp6b	chromatin modifying protein 6b	0.011
chkb	choline kinase beta	0.011
tcf25	transcription factor 25 (basic helix-loop-helix)	0.011
dcbld1	discoidin, CUB and LCCL domain containing 1	0.011
utx	ubiquitously transcribed tetratricopeptide repeat, X chromosome	0.011
capn2a	calpain 2, (m/II) large subunit a	0.011
guca1d	guanylate cyclase activator 1d	0.011
zgc:113019	zgc:113019	0.011
clic2	chloride intracellular channel 2	0.011
polr3gla	polymerase (RNA) III (DNA directed) polypeptide G like a	0.011
zgc:153096	zgc:153096	0.011
eif2ak3	eukaryotic translation initiation factor 2-alpha kinase 3	0.011
gngt2a	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2a	0.011
si:ch211-197h24.9	si:ch211-197h24.9	0.011
alg9	asparagine-linked glycosylation 9 homolog (S. cerevisiae, alpha- 1,2-mannosyltransferase)	0.011
tmem177	transmembrane protein 177	0.011
hbs1l	HBS1-like (S. cerevisiae)	0.011
rnf40	ring finger protein 40	0.011
tars	threonyl-tRNA synthetase	0.011
rmnd5b	required for meiotic nuclear division 5 homolog B (S. cerevisiae)	0.011
ppp1r7	protein phosphatase 1, regulatory (inhibitor) subunit 7	0.011
zgc:103658	zgc:103658	0.011
zgc:91890	zgc:91890	0.011
brap	BRCA1 associated protein	0.010
asmtl	acetylserotonin O-methyltransferase-like	0.010
zgc:85882	zgc:85882	0.010
qars	glutaminyl-tRNA synthetase	0.010
rae1	RAE1 RNA export 1 homolog (S. pombe)	0.010
txnl4a	thioredoxin-like 4A	0.010
opn1mw1	opsin 1 (cone pigments), medium-wave-sensitive, 1	0.010
zgc:55307	zgc:55307	0.010
rad1	RAD1 homolog (S. pombe)	0.010
cops4	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)	0.010	Human Fly
march6	membrane-associated ring finger (C3HC4) 6	0.010
gbp	glycogen synthase kinase binding protein	0.010
cdc42	cell division cycle 42	0.010
txlng	taxilin gamma	0.010
ythdf3	YTH domain family 3	0.010
zcchc17	zinc finger, CCHC domain containing 17	0.010
ptpn2a	protein tyrosine phosphatase, non-receptor type 2, a	0.010
recql5	RecQ protein-like 5	0.010
zgc:63629	zgc:63629	0.010
itm1	integral membrane protein 1	0.010
arglu1b	arginine and glutamate rich 1b	0.010
rdbp	RD RNA binding protein	0.010
LOC100151215	phosphodiesterase 7A-like	0.010
dda1	DET1 and DDB1 associated 1	0.010
zgc:110789	zgc:110789	0.010
spg11	spastic paraplegia 11	0.010
brms1	breast cancer metastasis-suppressor 1	0.010
cdk10	cyclin-dependent kinase 10	0.010
zgc:110682	zgc:110682	0.010
dtnbp1a	dystrobrevin binding protein 1a	0.010
mobkl3	MOB1, Mps One Binder kinase activator-like 3 (yeast)	0.010
polr2a	polymerase (RNA) II (DNA directed) polypeptide A	0.010
im:6893790	im:6893790	0.010
grk1b	G protein-coupled receptor kinase 1 b	0.010
im:7138239	im:7138239	0.010
si:dkey-1a7.2	si:dkey-1a7.2	0.010
ubr7	ubiquitin protein ligase E3 component n-recognin 7	0.010
nmd3	NMD3 homolog (S. cerevisiae)	0.010
mknk2b	MAP kinase-interacting serine/threonine kinase 2b	0.010
vps26bl	vacuolar protein sorting 26 homolog B, like	0.010
setd7	SET domain containing (lysine methyltransferase) 7	0.010
clptm1l	cleft lip and palate associated transmembrane protein 1, like	0.010
creb1	cAMP responsive element binding protein 1	0.010