IMP

Process View

Danio rerio

9 genes annotated in zebrafish

habenula development

GO:0021986

The progression of the habenula over time from its initial formation until its mature state. The habenula is the group of nuclei that makes up the stalk of the pineal gland.

Loading network...

In addition to gene-name show these genes:

Known genes in the process in zebrafish Include functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "habenula development"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "habenula development" (in gray)

Name	Description	Probability	Func Analog Organism
hnf1ba	HNF1 homeobox Ba	0.985
wnt2bb	wingless-type MMTV integration site family, member 2Bb	0.961	Zebrafish
tbx1	T-box 1	0.956
wnt1	wingless-type MMTV integration site family, member 1	0.938	Zebrafish
wnt4a	wingless-type MMTV integration site family, member 4a	0.847
wnt3a	wingless-type MMTV integration site family, member 3A	0.811	Zebrafish
wnt10a	wingless-type MMTV integration site family, member 10a	0.778	Zebrafish
wnt5b	wingless-type MMTV integration site family, member 5b	0.769	Zebrafish
lhx2b	LIM homeobox 2b	0.765
wnt2	wingless-type MMTV integration site family member 2	0.608	Zebrafish
wnt3	wingless-type MMTV integration site family, member 3	0.531	Zebrafish
wnt8b	wingless-type MMTV integration site family, member 8b	0.489	Zebrafish
mib	mind bomb	0.348
robo2	roundabout homolog 2	0.335
ndr2	nodal-related 2	0.322
amotl2a	angiomotin like 2a	0.316
foxp2	forkhead box P2	0.289
fgf3	fibroblast growth factor 3	0.272
lmx1b.1	LIM homeobox transcription factor 1, beta 1	0.268
kal1a	Kallmann syndrome 1a sequence	0.245
lef1	lymphocyte enhancer binding factor 1	0.213
wnt7aa	wingless-type MMTV integration site family, member 7Aa	0.198	Zebrafish
wnt10b	wingless-type MMTV integration site family, member 10b	0.194	Zebrafish
foxn4	forkhead box N4	0.194
otpa	orthopedia homolog a	0.177
wnt7ba	wingless-type MMTV integration site family, member 7Ba	0.175	Zebrafish
bmp2a	bone morphogenetic protein 2a	0.171
hoxd4a	homeo box D4a	0.150
oprd1b	opioid receptor, delta 1b	0.147
med12	mediator of RNA polymerase II transcription, subunit 12 homolog	0.143
fgf17	fibroblast growth factor 17	0.142
eya1	eyes absent homolog 1	0.132
zbtb4	zinc finger and BTB domain containing 4	0.128
oxtl	oxytocin-like	0.127
tbx18	T-box 18	0.125
dharma	dharma	0.123
itgav	integrin, alpha V	0.111
lratb	lecithin retinol acyltransferase b (phosphatidylcholine--retinol O-acyltransferase b)	0.111
dld	deltaD	0.111
foxb1.2	forkhead box B1.2	0.109
pdlim3b	PDZ and LIM domain 3b	0.107
fgf10a	fibroblast growth factor 10a	0.106
barhl2	BarH-like 2	0.105
bmp4	bone morphogenetic protein 4	0.104
wnt16	wingless-type MMTV integration site family, member 16	0.103
si:dkey-76k16.7	si:dkey-76k16.7	0.102
nxph1	neurexophilin 1	0.101
tob1a	transducer of ERBB2, 1a	0.101
klf2b	Kruppel-like factor 2b	0.099
wnt9b	wingless-type MMTV integration site family, member 9B	0.098	Zebrafish
gli1	GLI-Kruppel family member 1	0.095
fezf2	FEZ family zinc finger 2	0.091
tbx5a	T-box 5a	0.090
pitx3	paired-like homeodomain transcription factor 3	0.088
rest	RE1-silencing transcription factor	0.088
scube2	signal peptide, CUB domain, EGF-like 2	0.085
wnt7bb	wingless-type MMTV integration site family, member 7Bb	0.084
hoxa13b	homeo box A13b	0.079
spry4	sprouty (Drosophila) homolog 4	0.077
dla	deltaA	0.075
twist3	twist3	0.069
wnt11r	wingless-type MMTV integration site family, member 11, related	0.068	Zebrafish
si:dkey-24h22.4	si:dkey-24h22.4	0.068
oprk1	opioid receptor, kappa 1	0.067
notch1a	notch homolog 1a	0.064
zfyve26	zinc finger, FYVE domain containing 26	0.064
dab1b	disabled homolog 1b (Drosophila)	0.062
gli2b	GLI-Kruppel family member GLI2b	0.061
jag1b	jagged 1b	0.061
grem1a	gremlin 1 homolog a, cysteine knot superfamily (Xenopus laevis)	0.061
mafba	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	0.061
pdlim7	PDZ and LIM domain 7	0.061
fn1	fibronectin 1	0.060
sec61al1	Sec61 alpha like 1	0.060
csnk1db	casein kinase 1, delta b	0.060
sim1a	single-minded homolog 1a (Drosophila)	0.059
flh	floating head	0.057
tfap2c	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	0.057
cxcr4b	chemokine (C-X-C motif), receptor 4b	0.057
lhx5	LIM homeobox 5	0.055
wnt5a	wingless-type MMTV integration site family, member 5a	0.054	Zebrafish
nr2e1	nuclear receptor subfamily 2, group E, member 1	0.054
kctd12.1	potassium channel tetramerisation domain containing 12.1	0.054
vsx1	visual system homeobox 1 homolog, chx10-like	0.052
smad3b	MAD, mothers against decapentaplegic homolog 3b (Drosophila)	0.052
bon	bonnie and clyde	0.051
dlx2a	distal-less homeobox gene 2a	0.050
dkk3	dickkopf homolog 3 (Xenopus laevis)	0.049
epb4.1l4	erythrocyte protein band 4.1-like 4	0.048
sst1.1	somatostatin 1, tandem duplicate 1	0.047
notch3	notch homolog 3	0.047	Zebrafish
wnt9a	wingless-type MMTV integration site family, member 9A	0.047	Zebrafish
mbnl2	muscleblind-like 2 (Drosophila)	0.046
pcdh18a	protocadherin 18a	0.044
twist1a	twist1a	0.044
her15.1	hairy and enhancer of split-related 15.1	0.042
pvrl1b	poliovirus receptor-related 1b	0.040
mapk12	mitogen-activated protein kinase 12	0.039
map2k7	mitogen-activated protein kinase kinase 7	0.039
sema3aa	semaphorin 3aa	0.038
mecom	MDS1 and EVI1 complex locus	0.037
tnfsf10l3	tumor necrosis factor (ligand) superfamily, member 10 like 3	0.036
ndel1a	nudE nuclear distribution gene E homolog like 1 (A. nidulans) A	0.036
si:dkey-273o13.1	si:dkey-273o13.1	0.035
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.034
gja3	gap junction protein, alpha 3	0.034
smo	smoothened homolog (Drosophila)	0.033
mmp2	matrix metalloproteinase 2	0.032
wnt2ba	wingless-type MMTV integration site family, member 2Ba	0.032	Zebrafish
cnr1	cannabinoid receptor 1	0.031
brd4	bromodomain containing 4	0.031
gbx2	gastrulation brain homeo box 2	0.030
sb:cb81	sb:cb81	0.029
dkk1b	dickkopf 1b	0.028
oep	one-eyed pinhead	0.028
otx5	orthodenticle homolog 5	0.028
robo3	roundabout homolog 3	0.027
map2k4a	mitogen-activated protein kinase kinase 4a	0.027
nr4a3	nuclear receptor subfamily 4, group A, member 3	0.026
foxo3b	forkhead box O3b	0.026
map2k4b	mitogen-activated protein kinase kinase 4b	0.026
arnt2	aryl hydrocarbon receptor nuclear translocator 2	0.025
wif1	wnt inhibitory factor 1	0.025
tnnt2a	troponin T2a, cardiac	0.025
atoh7	atonal homolog 7	0.025
pwp2h	PWP2 periodic tryptophan protein homolog (yeast)	0.024
grhl2b	grainyhead-like 2b (Drosophila)	0.024
LOC566708	FL cytokine receptor-like	0.024
sox2	SRY-box containing gene 2	0.023
grem2	gremlin 2, cysteine knot superfamily	0.023
hoxc1a	homeo box C1a	0.023
dlx2b	distal-less homeobox gene 2b	0.023
osr2	odd-skipped related 2 (Drosophila)	0.023
ephb4b	eph receptor B4b	0.023
tbx16	T-box gene 16	0.022
oprm1	opioid receptor, mu 1	0.022
tram1	translocating chain-associating membrane protein 1	0.022
cyp19a1b	cytochrome P450, family 19, subfamily A, polypeptide 1b	0.022
fgfr1b	fibroblast growth factor receptor 1b	0.022
kop	askopos	0.021
pax7a	paired box gene 7a	0.021
col11a2	collagen type XI alpha-2	0.021
sfrp1a	secreted frizzled-related protein 1a	0.021
arx	aristaless related homeobox	0.021
msi1	musashi homolog 1 (Drosophila)	0.021
msxb	muscle segment homeobox B	0.020
her12	hairy-related 12	0.020
rarga	retinoic acid receptor gamma a	0.020
rerea	arginine-glutamic acid dipeptide (RE) repeats a	0.020
etv2	ets variant gene 2	0.020
fzd7b	frizzled homolog 7b	0.019
si:ch211-173o4.2	si:ch211-173o4.2	0.019
kctd8	potassium channel tetramerisation domain containing 8	0.019	Zebrafish
twist1b	twist1b	0.019
wnt11	wingless-type MMTV integration site family, member 11	0.019	Zebrafish
bcl2	B-cell leukemia/lymphoma 2	0.019
dlc	deltaC	0.019
edn1	endothelin 1	0.019
csnk1da	casein kinase 1, delta a	0.018
birc2	baculoviral IAP repeat-containing 2	0.018
spaw	southpaw	0.018
trim3a	tripartite motif-containing 3a	0.018
mapk8b	mitogen-activated protein kinase 8b	0.018
znf536	zinc finger protein 536	0.018
mitfa	microphthalmia-associated transcription factor a	0.018
atp1a2a	ATPase, Na+/K+ transporting, alpha 2a polypeptide	0.018
ascl1a	achaete-scute complex-like 1a (Drosophila)	0.017
stat1b	signal transducer and activator of transcription 1b	0.017
cdh2	cadherin 2, neuronal	0.016
zgc:56419	zgc:56419	0.016
zic3	zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila)	0.016
neurod4	neurogenic differentiation 4	0.016
ism1	isthmin 1	0.016
foxj1b	forkhead box J1b	0.016
cdx4	caudal type homeo box transcription factor 4	0.016
six2a	sine oculis-related homeobox 2a	0.016
tmed10	transmembrane emp24-like trafficking protein 10 (yeast)	0.016
nog2	noggin 2	0.015
barhl1.2	BarH-like 1.2	0.015
si:dkeyp-7c9.1	si:dkeyp-7c9.1	0.015
bmp2b	bone morphogenetic protein 2b	0.015
gria4b	glutamate receptor, ionotropic, AMPA 4b	0.015
arf5	ADP-ribosylation factor 5	0.015
szl	sizzled	0.015
msxc	muscle segment homeobox C	0.015
kctd12.2	potassium channel tetramerisation domain containing 12.2	0.015
lama5	laminin, alpha 5	0.015
mesp2	mesoderm posterior 2 homolog (mouse)	0.014
sult1st4	sulfotransferase family 1, cytosolic sulfotransferase 4	0.014
barx2	BarH-like homeobox 2	0.014
xbp1	X-box binding protein 1	0.014
elmo1	engulfment and cell motility 1 (ced-12 homolog, C. elegans)	0.014
boc	brother of CDO	0.014
frzb	frizzled-related protein	0.014
sid4	secreted immunoglobulin domain 4	0.014
klf4a	Kruppel-like transcription factor 4a	0.014
crb2a	crumbs homolog 2a	0.014
lamc1	laminin, gamma 1	0.014
igf1ra	insulin-like growth factor 1a receptor	0.014
dact1	dapper homolog 1, antagonist of beta-catenin (xenopus)	0.014
zgc:171802	zgc:171802	0.014
limk1	LIM domain kinase 1	0.014
fbxl14b	F-box and leucine-rich repeat protein 14b	0.013
emx2	empty spiracles homeobox 2	0.013
adcyap1r1	adenylate cyclase activating polypeptide 1 (pituitary) receptor type I	0.013
lft1	lefty1	0.013
pou4f1	POU domain, class 4, transcription factor 1	0.013
vsx2	visual system homeobox 2	0.013
glcea	glucuronyl C5-epimerase a	0.013
sp2	sp2 transcription factor	0.013
tfpi2	tissue factor pathway inhibitor 2	0.013
kal1b	Kallmann syndrome 1b sequence	0.013
lhx9	LIM homeobox 9	0.013
slc18a3b	solute carrier family 18 (vesicular acetylcholine), member 3b	0.013
cyp26c1	cytochrome P450, family 26, subfamily C, polypeptide 1	0.013
bmpr1aa	bone morphogenetic protein receptor, type 1aa	0.012
nkx2.1a	NK2 homeobox 1a	0.012
lhx1b	LIM homeobox 1b	0.012
mapk1	mitogen-activated protein kinase 1	0.012
klf2a	Kruppel-like factor 2a	0.012
daam1a	dishevelled associated activator of morphogenesis 1a	0.012
satb2	SATB homeobox 2	0.012
vax1	ventral anterior homeobox 1	0.012
gle1	GLE1 RNA export mediator homolog (yeast)	0.012
dzip1	DAZ interacting protein 1	0.012
wu:fj62d01	wu:fj62d01	0.012
emx1	empty spiracles homeobox 1	0.012
hmgcrb	3-hydroxy-3-methylglutaryl-Coenzyme A reductase b	0.012
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.012
gdnf	glial cell derived neurotrophic factor	0.011
tph2	tryptophan hydroxylase 2 (tryptophan 5-monooxygenase)	0.011
hoxd11a	homeo box D11a	0.011
otx2	orthodenticle homolog 2	0.011
inhbaa	inhibin, beta Aa	0.011
grin1a	glutamate receptor, ionotropic, N-methyl D-aspartate 1a	0.011
hey2	hairy/enhancer-of-split related with YRPW motif 2	0.011
sox21a	SRY-box containing gene 21a	0.011
pdlim3a	PDZ and LIM domain 3a	0.011
gnl2	guanine nucleotide binding protein-like 2 (nucleolar)	0.011
sim2	single-minded homolog 2 (Drosophila)	0.011
cdh6	cadherin 6	0.011
ntn1b	netrin 1b	0.011
htr1bd	5-hydroxytryptamine (serotonin) receptor 1bd	0.011
rxrga	retinoid x receptor, gamma a	0.011
oprd1a	opioid receptor, delta 1a	0.011
rad21	RAD21 homolog (S. pombe)	0.011
angpt1	angiopoietin 1	0.011
foxd3	forkhead box D3	0.011
LOC100331502	melanopsin-B-like	0.010
sfrp1b	secreted frizzled-related protein 1b	0.010
tp53inp1	tumor protein p53 inducible nuclear protein 1	0.010
fam84b	family with sequence similarity 84, member B	0.010
mapk6	mitogen-activated protein kinase 6	0.010
unc5db	unc-5 homolog Db (C. elegans)	0.010
and1	actinodin1	0.010
atoh1a	atonal homolog 1a	0.010
cpa2	carboxypeptidase A2 (pancreatic)	0.010
pcp4a	Purkinje cell protein 4a	0.010
cadm4	cell adhesion molecule 4	0.010
apc	adenomatosis polyposis coli	0.010