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Mus musculus

12 genes annotated in mouse

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rostrocaudal neural tube patterning

GO:0021903

The process in which the neural tube is divided into specific regions along the rostrocaudal axis.

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Known genes in the process in mouse Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "rostrocaudal neural tube patterning"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "rostrocaudal neural tube patterning" (in gray)

Name	Description	Probability	Func Analog Organism
Otx2	orthodenticle homolog 2 (Drosophila)	1.000	Zebrafish
Rnf2	ring finger protein 2	1.000
Shh	sonic hedgehog	1.000
Gli3	GLI-Kruppel family member GLI3	1.000
Fgf8	fibroblast growth factor 8	1.000
Fgfr2	fibroblast growth factor receptor 2	1.000
Pax2	paired box gene 2	1.000	Zebrafish
Fgfr1	fibroblast growth factor receptor 1	0.999
Rybp	RING1 and YY1 binding protein	0.997
En1	engrailed 1	0.996
Otx1	orthodenticle homolog 1 (Drosophila)	0.996	Zebrafish
Bmp4	bone morphogenetic protein 4	0.995
Foxc1	forkhead box C1	0.987
Pax3	paired box gene 3	0.987
Lhx1	LIM homeobox protein 1	0.986
Rarg	retinoic acid receptor, gamma	0.983
Emx2	empty spiracles homolog 2 (Drosophila)	0.976
Ctnnb1	catenin (cadherin associated protein), beta 1	0.974
Nog	noggin	0.969
Smo	smoothened homolog (Drosophila)	0.965
Sox2	SRY-box containing gene 2	0.955	Mouse
Hes1	hairy and enhancer of split 1 (Drosophila)	0.947
Gli2	GLI-Kruppel family member GLI2	0.946
Lmx1b	LIM homeobox transcription factor 1 beta	0.944	Zebrafish
Nodal	nodal	0.933
Emx1	empty spiracles homolog 1 (Drosophila)	0.932
Fgf10	fibroblast growth factor 10	0.926
Wnt3a	wingless-related MMTV integration site 3A	0.909	Zebrafish Mouse
Pitx2	paired-like homeodomain transcription factor 2	0.896
Hand1	heart and neural crest derivatives expressed transcript 1	0.875
Six1	sine oculis-related homeobox 1 homolog (Drosophila)	0.875
Bmp7	bone morphogenetic protein 7	0.854
Tcfap2a	transcription factor AP-2, alpha	0.805
Hoxd11	homeobox D11	0.790
Msx2	homeobox, msh-like 2	0.786
Gbx2	gastrulation brain homeobox 2	0.779
Wnt1	wingless-related MMTV integration site 1	0.776
Fgfr3	fibroblast growth factor receptor 3	0.771
Foxc2	forkhead box C2	0.770
Pou5f1	POU domain, class 5, transcription factor 1	0.766
Alx4	aristaless-like homeobox 4	0.757
Sox11	SRY-box containing gene 11	0.732	Mouse
Msx1	homeobox, msh-like 1	0.701
Lrp6	low density lipoprotein receptor-related protein 6	0.699
Rarb	retinoic acid receptor, beta	0.686
Lmx1a	LIM homeobox transcription factor 1 alpha	0.685
Pax6	paired box gene 6	0.680
Ret	ret proto-oncogene	0.650
Meox2	mesenchyme homeobox 2	0.645
Rara	retinoic acid receptor, alpha	0.640
Hes5	hairy and enhancer of split 5 (Drosophila)	0.597	Mouse
Ldb1	LIM domain binding 1	0.567
Dlx5	distal-less homeobox 5	0.540
Sall4	sal-like 4 (Drosophila)	0.536
Tcfcp2l1	transcription factor CP2-like 1	0.518
Lef1	lymphoid enhancer binding factor 1	0.510
Pcgf2	polycomb group ring finger 2	0.433	Mouse
T	brachyury	0.417
Nanog	Nanog homeobox	0.414
Fgf3	fibroblast growth factor 3	0.412
Ror2	receptor tyrosine kinase-like orphan receptor 2	0.406
Isl1	ISL1 transcription factor, LIM/homeodomain	0.400
Tbx2	T-box 2	0.398
Pou3f3	POU domain, class 3, transcription factor 3	0.394
Foxg1	forkhead box G1	0.346
Vangl2	vang-like 2 (van gogh, Drosophila)	0.342
Eya1	eyes absent 1 homolog (Drosophila)	0.341
Sox9	SRY-box containing gene 9	0.318	Mouse
Gdnf	glial cell line derived neurotrophic factor	0.299
Fgf15	fibroblast growth factor 15	0.295
Prrx2	paired related homeobox 2	0.286
Tbx3	T-box 3	0.252
Ptch1	patched homolog 1	0.232
Dkk1	dickkopf homolog 1 (Xenopus laevis)	0.228
Chd7	chromodomain helicase DNA binding protein 7	0.227
Tgfb2	transforming growth factor, beta 2	0.224
Lhx5	LIM homeobox protein 5	0.199
En2	engrailed 2	0.190	Zebrafish Mouse
Smad6	MAD homolog 6 (Drosophila)	0.187
Tbx1	T-box 1	0.187
Fgf17	fibroblast growth factor 17	0.185	Mouse
Ring1	ring finger protein 1	0.172
Ascl1	achaete-scute complex homolog 1 (Drosophila)	0.169
Cbx8	chromobox homolog 8 (Drosophila Pc class)	0.165
Hand2	heart and neural crest derivatives expressed transcript 2	0.160
Wnt6	wingless-related MMTV integration site 6	0.150	Mouse
Cbx7	chromobox homolog 7	0.150
Jag1	jagged 1	0.149
Foxf1a	forkhead box F1a	0.149
Nkx2-5	NK2 transcription factor related, locus 5 (Drosophila)	0.141
Hspg2	perlecan (heparan sulfate proteoglycan 2)	0.129
Zeb1	zinc finger E-box binding homeobox 1	0.127
Bmpr1a	bone morphogenetic protein receptor, type 1A	0.112
Efnb2	ephrin B2	0.110
Cdx2	caudal type homeobox 2	0.110
Fgf4	fibroblast growth factor 4	0.109
Ptk7	PTK7 protein tyrosine kinase 7	0.106
Twist2	twist homolog 2 (Drosophila)	0.105
Mapk8ip1	mitogen-activated protein kinase 8 interacting protein 1	0.100
Uncx	UNC homeobox	0.099
Hmx1	H6 homeobox 1	0.097
Sox17	SRY-box containing gene 17	0.096
Alx3	aristaless-like homeobox 3	0.093
Hoxa13	homeobox A13	0.091
Ssbp3	single-stranded DNA binding protein 3	0.090
Aldh1a2	aldehyde dehydrogenase family 1, subfamily A2	0.090
Npas1	neuronal PAS domain protein 1	0.086
Fzd1	frizzled homolog 1 (Drosophila)	0.085
Hmx3	H6 homeobox 3	0.080
Apc	adenomatosis polyposis coli	0.078
Chrd	chordin	0.074
Gas1	growth arrest specific 1	0.072
Sox3	SRY-box containing gene 3	0.071	Mouse
Gsc	goosecoid homeobox	0.071
Nos3	nitric oxide synthase 3, endothelial cell	0.068
Bcor	BCL6 interacting corepressor	0.068
Mycn	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	0.067
Pax8	paired box gene 8	0.064
Sox4	SRY-box containing gene 4	0.063	Mouse
Hes3	hairy and enhancer of split 3 (Drosophila)	0.061
Mta1	metastasis associated 1	0.060
Vax1	ventral anterior homeobox containing gene 1	0.059
She	src homology 2 domain-containing transforming protein E	0.058
Igdcc3	immunoglobulin superfamily, DCC subclass, member 3	0.058
Prrx1	paired related homeobox 1	0.054
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	0.054
Foxh1	forkhead box H1	0.054
Edar	ectodysplasin-A receptor	0.052
Dact1	dapper homolog 1, antagonist of beta-catenin (xenopus)	0.052
Tbx15	T-box 15	0.052
Mga	MAX gene associated	0.052
Foxd2	forkhead box D2	0.051
Six4	sine oculis-related homeobox 4 homolog (Drosophila)	0.050
Hoxd13	homeobox D13	0.050
Cdx1	caudal type homeobox 1	0.049
Skor1	SKI family transcriptional corepressor 1	0.049
Fzd10	frizzled homolog 10 (Drosophila)	0.048
Tcfap2c	transcription factor AP-2, gamma	0.048
Arx	aristaless related homeobox	0.046
Six3	sine oculis-related homeobox 3 homolog (Drosophila)	0.046
Wnt4	wingless-related MMTV integration site 4	0.046	Mouse
Gata4	GATA binding protein 4	0.045
Sall3	sal-like 3 (Drosophila)	0.044
Apaf1	apoptotic peptidase activating factor 1	0.043
Hoxa1	homeobox A1	0.042
Pou3f1	POU domain, class 3, transcription factor 1	0.041
Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	0.040
Kl	klotho	0.040
Jag2	jagged 2	0.040
Acan	aggrecan	0.039
Lhx3	LIM homeobox protein 3	0.039
Hesx1	homeobox gene expressed in ES cells	0.039
Zic2	zinc finger protein of the cerebellum 2	0.039
Efna4	ephrin A4	0.038
Erbb4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	0.038
Trp53	transformation related protein 53	0.037
Pitx1	paired-like homeodomain transcription factor 1	0.037
Gsk3b	glycogen synthase kinase 3 beta	0.037
Pcdh12	protocadherin 12	0.037
Sox1	SRY-box containing gene 1	0.037
Ntf3	neurotrophin 3	0.037
Gata3	GATA binding protein 3	0.036
Nf1	neurofibromatosis 1	0.036
Hoxb13	homeobox B13	0.035
Rspo1	R-spondin homolog (Xenopus laevis)	0.035
Tal1	T-cell acute lymphocytic leukemia 1	0.035
Lrp2	low density lipoprotein receptor-related protein 2	0.033	Mouse
Fgf18	fibroblast growth factor 18	0.033	Mouse
Pten	phosphatase and tensin homolog	0.032
BC024139	cDNA sequence BC024139	0.032
Hoxa2	homeobox A2	0.032
Dcaf7	DDB1 and CUL4 associated factor 7	0.031
Wt1	Wilms tumor 1 homolog	0.030
Wnt3	wingless-related MMTV integration site 3	0.030	Mouse
Csnk2a1	casein kinase 2, alpha 1 polypeptide	0.030
Sox7	SRY-box containing gene 7	0.030	Mouse
Axin1	axin 1	0.029
Fzd8	frizzled homolog 8 (Drosophila)	0.028
Nrtn	neurturin	0.028
Bcl2	B-cell leukemia/lymphoma 2	0.027
Cldn5	claudin 5	0.026
Kdm1a	lysine (K)-specific demethylase 1A	0.026
Gpc3	glypican 3	0.026
Crlf1	cytokine receptor-like factor 1	0.026
Rxra	retinoid X receptor alpha	0.025
Sall1	sal-like 1 (Drosophila)	0.025
Notch3	Notch gene homolog 3 (Drosophila)	0.025
Eda	ectodysplasin-A	0.025
Phc2	polyhomeotic-like 2 (Drosophila)	0.025
Pygo1	pygopus 1	0.025
Rbbp4	retinoblastoma binding protein 4	0.025
Cyp26a1	cytochrome P450, family 26, subfamily a, polypeptide 1	0.025
Lhx9	LIM homeobox protein 9	0.024
Hoxa11	homeobox A11	0.024
Erbb2	v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)	0.024
Ednra	endothelin receptor type A	0.024
Zbtb33	zinc finger and BTB domain containing 33	0.024
Gata6	GATA binding protein 6	0.024
Pkd1	polycystic kidney disease 1 homolog	0.023
Gli1	GLI-Kruppel family member GLI1	0.023
Btbd17	BTB (POZ) domain containing 17	0.023
Tbl1xr1	transducin (beta)-like 1X-linked receptor 1	0.023
Pcgf6	polycomb group ring finger 6	0.023	Mouse
Rem1	rad and gem related GTP binding protein 1	0.023
Lrp4	low density lipoprotein receptor-related protein 4	0.022	Mouse
Pthlh	parathyroid hormone-like peptide	0.022
Pofut1	protein O-fucosyltransferase 1	0.022
Zic3	zinc finger protein of the cerebellum 3	0.022
Tcf15	transcription factor 15	0.022
Wnt2b	wingless related MMTV integration site 2b	0.022	Mouse
Cbx2	chromobox homolog 2 (Drosophila Pc class)	0.022
Foxa2	forkhead box A2	0.022
Bmp2	bone morphogenetic protein 2	0.021
Etv4	ets variant gene 4 (E1A enhancer binding protein, E1AF)	0.021
Cabp7	calcium binding protein 7	0.021
Efnb1	ephrin B1	0.021
Nfia	nuclear factor I/A	0.021
Bdnf	brain derived neurotrophic factor	0.020
Ptpn11	protein tyrosine phosphatase, non-receptor type 11	0.020
Fzd2	frizzled homolog 2 (Drosophila)	0.020
Foxn1	forkhead box N1	0.020
Lhx2	LIM homeobox protein 2	0.020
Gfra1	glial cell line derived neurotrophic factor family receptor alpha 1	0.020
Chrm4	cholinergic receptor, muscarinic 4	0.020
Col13a1	collagen, type XIII, alpha 1	0.020
Emid2	EMI domain containing 2	0.020
Cyp24a1	cytochrome P450, family 24, subfamily a, polypeptide 1	0.019
Hoxd9	homeobox D9	0.019
Neurog1	neurogenin 1	0.018
Hoxa5	homeobox A5	0.018
Wnt10b	wingless related MMTV integration site 10b	0.018	Zebrafish Mouse
Arid1a	AT rich interactive domain 1A (SWI-like)	0.018
Bmper	BMP-binding endothelial regulator	0.018
Hs6st3	heparan sulfate 6-O-sulfotransferase 3	0.018
Hoxa3	homeobox A3	0.018
Hoxb2	homeobox B2	0.018
Irx1	Iroquois related homeobox 1 (Drosophila)	0.017
Phox2b	paired-like homeobox 2b	0.017
Rb1	retinoblastoma 1	0.017
Hoxd12	homeobox D12	0.017
Hhex	hematopoietically expressed homeobox	0.016
Runx2	runt related transcription factor 2	0.016
Twsg1	twisted gastrulation homolog 1 (Drosophila)	0.016
Phc3	polyhomeotic-like 3 (Drosophila)	0.016
Tcf7l1	transcription factor 7-like 1 (T-cell specific, HMG box)	0.016	Zebrafish
Bcl6b	B-cell CLL/lymphoma 6, member B	0.016
Nkx2-1	NK2 homeobox 1	0.016
Col2a1	collagen, type II, alpha 1	0.016
Matn4	matrilin 4	0.016
Pou3f4	POU domain, class 3, transcription factor 4	0.016
Vegfa	vascular endothelial growth factor A	0.015
Slc22a12	solute carrier family 22 (organic anion/cation transporter), member 12	0.015
Hsd11b2	hydroxysteroid 11-beta dehydrogenase 2	0.015
Nkx2-3	NK2 transcription factor related, locus 3 (Drosophila)	0.015
Pick1	protein interacting with C kinase 1	0.015
Cer1	cerberus 1 homolog (Xenopus laevis)	0.015
Six5	sine oculis-related homeobox 5 homolog (Drosophila)	0.015
Alx1	ALX homeobox 1	0.015
Pkdcc	protein kinase domain containing, cytoplasmic	0.015
Sox13	SRY-box containing gene 13	0.015
Sema3b	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	0.014
Erbb3	v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)	0.014
Setdb1	SET domain, bifurcated 1	0.014
Dlx1	distal-less homeobox 1	0.014
Ptch2	patched homolog 2	0.014
L3mbtl2	l(3)mbt-like 2 (Drosophila)	0.014
Hoxa7	homeobox A7	0.014
Kcnq1	potassium voltage-gated channel, subfamily Q, member 1	0.014
Irx2	Iroquois related homeobox 2 (Drosophila)	0.014
Kit	kit oncogene	0.014
Pvrl1	poliovirus receptor-related 1	0.014
Adrb1	adrenergic receptor, beta 1	0.014
Hoxa4	homeobox A4	0.014
Ptprb	protein tyrosine phosphatase, receptor type, B	0.013
Ppap2b	phosphatidic acid phosphatase type 2B	0.013
Kcns1	K+ voltage-gated channel, subfamily S, 1	0.013
Cdc42ep1	CDC42 effector protein (Rho GTPase binding) 1	0.013
Hoxa10	homeobox A10	0.013
Wls	wntless homolog (Drosophila)	0.013	Zebrafish
Lrp5	low density lipoprotein receptor-related protein 5	0.013	Mouse
Olig2	oligodendrocyte transcription factor 2	0.013
Adra2b	adrenergic receptor, alpha 2b	0.013
Slc27a3	solute carrier family 27 (fatty acid transporter), member 3	0.013
Irx4	Iroquois related homeobox 4 (Drosophila)	0.013
Apoe	apolipoprotein E	0.013
Cdh16	cadherin 16	0.012
Yaf2	YY1 associated factor 2	0.012
Sema6a	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	0.012
Snai1	snail homolog 1 (Drosophila)	0.012
Itgb1	integrin beta 1 (fibronectin receptor beta)	0.012
Zic1	zinc finger protein of the cerebellum 1	0.012
Mesp1	mesoderm posterior 1	0.012
Kcnd3	potassium voltage-gated channel, Shal-related family, member 3	0.012
Nobox	NOBOX oogenesis homeobox	0.012
Prop1	paired like homeodomain factor 1	0.012
Npr1	natriuretic peptide receptor 1	0.012
Mnx1	motor neuron and pancreas homeobox 1	0.012	Mouse
Clic3	chloride intracellular channel 3	0.012
Pbx1	pre B-cell leukemia transcription factor 1	0.012
Mta2	metastasis-associated gene family, member 2	0.012
Ssbp2	single-stranded DNA binding protein 2	0.012	Mouse
Wnt11	wingless-related MMTV integration site 11	0.012	Mouse
Klk1b11	kallikrein 1-related peptidase b11	0.012
Celsr1	cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)	0.012
Ptger1	prostaglandin E receptor 1 (subtype EP1)	0.012
Krtap3-3	keratin associated protein 3-3	0.011
Pou3f2	POU domain, class 3, transcription factor 2	0.011
Agtr2	angiotensin II receptor, type 2	0.011
Lama5	laminin, alpha 5	0.011
Hrh2	histamine receptor H2	0.011
P2rx6	purinergic receptor P2X, ligand-gated ion channel, 6	0.011
Tead2	TEA domain family member 2	0.011
Zscan2	zinc finger and SCAN domain containing 2	0.011
Il11	interleukin 11	0.011
Dmbx1	diencephalon/mesencephalon homeobox 1	0.011
Zfp362	zinc finger protein 362	0.011
Fzd6	frizzled homolog 6 (Drosophila)	0.011
Hoxb6	homeobox B6	0.011
Barhl1	BarH-like 1 (Drosophila)	0.011
Efna2	ephrin A2	0.011
Fgf5	fibroblast growth factor 5	0.011
Wnt5b	wingless-related MMTV integration site 5B	0.011	Mouse
H1foo	H1 histone family, member O, oocyte-specific	0.011
Fhl3	four and a half LIM domains 3	0.011
Twist1	twist homolog 1 (Drosophila)	0.010
Fgfrl1	fibroblast growth factor receptor-like 1	0.010
Tbx6	T-box 6	0.010
Msx3	homeobox, msh-like 3	0.010
Lmo4	LIM domain only 4	0.010
Nr2e1	nuclear receptor subfamily 2, group E, member 1	0.010
Zfp703	zinc finger protein 703	0.010
Chd4	chromodomain helicase DNA binding protein 4	0.010
Grem1	gremlin 1	0.010