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Danio rerio

16 genes annotated in zebrafish

retinoic acid receptor signaling pathway

The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "retinoic acid receptor signaling pathway"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "retinoic acid receptor signaling pathway" (in gray)

Name	Description	Probability	Func Analog Organism
rxraa	retinoid X receptor, alpha a	0.891	Human Zebrafish Mouse
pparg	peroxisome proliferator activated receptor gamma	0.802
raraa	retinoic acid receptor, alpha a	0.770
dlc	deltaC	0.650
crabp2a	cellular retinoic acid binding protein 2, a	0.646
etv5b	ets variant 5b	0.603
fabp2	fatty acid binding protein 2, intestinal	0.572	Zebrafish
gata5	GATA-binding protein 5	0.433
gli2a	GLI-Kruppel family member GLI2a	0.348
rxrga	retinoid x receptor, gamma a	0.315
cdx4	caudal type homeo box transcription factor 4	0.218
pou1f1	POU domain, class 1, transcription factor 1	0.192
hoxb1b	homeo box B1b	0.187
aldh1a2	aldehyde dehydrogenase 1 family, member A2	0.187
nr1d2b	nuclear receptor subfamily 1, group D, member 2b	0.183	Zebrafish
fabp11a	fatty acid binding protein 11a	0.172	Zebrafish
kctd15a	potassium channel tetramerisation domain containing 15a	0.169
tm4sf4	transmembrane 4 L six family member 4	0.163
dct	dopachrome tautomerase	0.155
nrp2b	neuropilin 2b	0.154
rxrba	retinoid x receptor, beta a	0.150
mtp	microsomal triglyceride transfer protein	0.136
fgfr2	fibroblast growth factor receptor 2	0.127
axin2	axin 2 (conductin, axil)	0.115
trpv6	transient receptor potential cation channel, subfamily V, member 6	0.109
lfng	lunatic fringe homolog	0.107
tgif1	TGFB-induced factor homeobox 1	0.092
LOC795916	mucolipin-1-like	0.088
sox11a	SRY-box containing gene 11a	0.084
rarab	retinoic acid receptor, alpha b	0.083	Human Zebrafish Mouse
pvrl1a	poliovirus receptor-related 1a	0.080
ptbp2	polypyrimidine tract binding protein 2	0.079
nr2f5	nuclear receptor subfamily 2, group F, member 5	0.078	Zebrafish
fzd7a	frizzled homolog 7a	0.076
esr2b	estrogen receptor 2b	0.074
tcf12	transcription factor 12	0.073
tead3a	TEA domain family member 3 a	0.071
fabp1b.1	fatty acid binding protein 1b, tandem duplicate 1	0.069
rdh10a	retinol dehydrogenase 10a	0.069	Zebrafish
fabp3	fatty acid binding protein 3, muscle and heart	0.069	Zebrafish
rxrab	retinoid x receptor, alpha b	0.068
meis2.1	myeloid ecotropic viral integration site 2.1	0.067
rxrgb	retinoid X receptor, gamma b	0.067	Zebrafish Mouse
sox9a	SRY-box containing gene 9a	0.067
myh11a	myosin, heavy polypeptide 11, smooth muscle a	0.064
tp53	tumor protein p53	0.063
prdm5	PR domain containing 5	0.063
gng13a	guanine nucleotide binding protein (G protein), gamma 13a	0.061
dhrs3a	dehydrogenase/reductase (SDR family) member 3a	0.061
fzd7b	frizzled homolog 7b	0.059
znf703	zinc finger protein 703	0.059
sox17	SRY-box containing gene 17	0.059
aqp1a.1	aquaporin 1a, tandem duplicate 1	0.059
hdac4	histone deacetylase 4	0.059
ncor2	nuclear receptor co-repressor 2	0.058
gamt	guanidinoacetate N-methyltransferase	0.058
ntn1a	netrin 1a	0.058
itga5	integrin, alpha 5 (fibronectin receptor, alpha polypeptide)	0.056
ldb1a	LIM-domain binding factor 1a	0.055
rassf1	Ras association (RalGDS/AF-6) domain family 1	0.052
sox19a	SRY-box containing gene 19a	0.052
nr1i2	nuclear receptor subfamily 1, group I, member 2	0.052
ryr3	ryanodine receptor 3	0.052
caprin1a	cell cycle associated protein 1a	0.051
fgf8a	fibroblast growth factor 8 a	0.051
sema3aa	semaphorin 3aa	0.050
fsta	follistatin a	0.049
pcdh18b	protocadherin 18b	0.049
mab21l2	mab-21-like 2	0.049
cnot6	CCR4-NOT transcription complex, subunit 6	0.046
nr1d2a	nuclear receptor subfamily 1, group D, member 2a	0.045	Zebrafish
cacnb2b	calcium channel, voltage-dependent, beta 2b	0.044
tfr1b	transferrin receptor 1b	0.044
robo4	roundabout homolog 4	0.043
efnb3b	ephrin B3b	0.042
pbx1a	pre-B-cell leukemia transcription factor 1a	0.042
jam3b	junctional adhesion molecule 3b	0.040
s100a1	S100 calcium binding protein A1	0.040
prtga	protogenin homolog a (Gallus gallus)	0.039
rorab	RAR-related orphan receptor A, paralog b	0.039
aldh2a	aldehyde dehydrogenase 2 family (mitochondrial)a	0.038
nrip1b	nuclear receptor interacting protein 1b	0.038
pax3a	paired box gene 3a	0.037
per2	period homolog 2 (Drosophila)	0.036
id1	inhibitor of DNA binding 1	0.035
irx3b	iroquois homeobox protein 3b	0.035
sb:cb541	sb:cb541	0.035
fstl1a	follistatin-like 1a	0.035
pdzd7a	PDZ domain containing 7a	0.035
zgc:123180	zgc:123180	0.035
id2a	inhibitor of DNA binding 2, dominant negative helix-loop-helix protein, a	0.035
jag1a	jagged 1a	0.034
cat	catalase	0.034
sf1	splicing factor 1	0.034
cga	glycoprotein hormones, alpha polypeptide	0.034
fzd8a	frizzled homolog 8a	0.033
smarcd3b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b	0.032
nme4	non-metastatic cells 4, protein expressed in	0.032
nr5a2	nuclear receptor subfamily 5, group A, member 2	0.032
efemp2	EGF-containing fibulin-like extracellular matrix protein 2	0.031
agxt2l1	alanine-glyoxylate aminotransferase 2-like 1	0.031
thrab	thyroid hormone receptor alpha b	0.031	Zebrafish
trpv4	transient receptor potential cation channel, subfamily V, member 4	0.031
cdon	cell adhesion molecule-related/down-regulated by oncogenes	0.030
si:ch211-215h6.2	si:ch211-215h6.2	0.030
gata2a	GATA-binding protein 2a	0.030
hsf2	heat shock factor 2	0.030
mych	myelocytomatosis oncogene homolog	0.030
mcoln1	mucolipin 1	0.029
scp2	sterol carrier protein 2	0.029
LOC100002342	carboxypeptidase A6-like	0.029
shhb	sonic hedgehog b	0.028
mstna	myostatin a	0.028
acsl4a	acyl-CoA synthetase long-chain family member 4a	0.028
foxc1a	forkhead box C1a	0.028
mdkb	midkine-related growth factor b	0.027
pcdh18a	protocadherin 18a	0.027
esd	esterase D/formylglutathione hydrolase	0.027
ncoa2	nuclear receptor coactivator 2	0.027
zgc:110409	zgc:110409	0.027
col7a1l	collagen type VII alpha 1-like	0.027
nr1d1	nuclear receptor subfamily 1, group d, member 1	0.026	Zebrafish
myl7	myosin, light polypeptide 7, regulatory	0.026
zgc:162630	zgc:162630	0.026
hnf1ba	HNF1 homeobox Ba	0.026
lbr	lamin B receptor	0.025
wu:fv91b12	wu:fv91b12	0.025
duox	dual oxidase	0.025
stc1l	stanniocalcin 1, like	0.025
rarga	retinoic acid receptor gamma a	0.025	Human Zebrafish Mouse
ppdpfa	pancreatic progenitor cell differentiation and proliferation factor a	0.025
egr2b	early growth response 2b	0.025
gdf6a	growth differentiation factor 6a	0.025
sfrp5	secreted frizzled-related protein 5	0.024
wnt11	wingless-type MMTV integration site family, member 11	0.024
zgc:171553	zgc:171553	0.024
pacsin3	protein kinase C and casein kinase substrate in neurons 3	0.024
plekhg4	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	0.024
cx30.3	connexin 30.3	0.024
nfia	nuclear factor I/A	0.023
znf503	zinc finger protein 503	0.023
si:ch211-232m7.1	si:ch211-232m7.1	0.023
btg2	B-cell translocation gene 2	0.023
cldn15la	claudin 15-like a	0.023
spry2	sprouty homolog 2	0.022
her9	hairy-related 9	0.022
irx5a	iroquois homeobox protein 5a	0.022
fstl1b	follistatin-like 1b	0.022
nr1h3	nuclear receptor subfamily 1, group H, member 3	0.022
zgc:100919	zgc:100919	0.022
egfra	epidermal growth factor receptor a (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)	0.022
zfpm2b	zinc finger protein, multitype 2b	0.022
mbnl1	muscleblind-like (Drosophila)	0.021
neurod4	neurogenic differentiation 4	0.021
gngt2a	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2a	0.021
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.021
zgc:85777	zgc:85777	0.021
prox2	prospero homeobox 2	0.021
mcf2l	MCF.2 cell line derived transforming sequence-like and mcf.2 cell line derived transforming sequence-like	0.020
vdrb	vitamin D receptor b	0.020
zgc:112421	zgc:112421	0.020
zgc:110306	zgc:110306	0.020
adh8b	alcohol dehydrogenase 8b	0.020
im:6907928	im:6907928	0.020
cp	ceruloplasmin	0.020
ntrk2b	neurotrophic tyrosine kinase, receptor, type 2b	0.020
hoxb3a	homeo box B3a	0.020
smarcd1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	0.020
tfec	transcription factor EC	0.020
fabp10b	fatty acid binding protein 10b, liver basic	0.020
foxb1.1	forkhead box B1.1	0.019
roraa	RAR-related orphan receptor A, paralog a	0.019
aldob	aldolase b, fructose-bisphosphate	0.019
bcl2l10	BCL2-like 10 (apoptosis facilitator)	0.019
stra6	stimulated by retinoic acid gene 6 homolog (mouse)	0.019
mbnl3	muscleblind-like 3 (Drosophila)	0.019
meis3	myeloid ecotropic viral integration site 3	0.019	Zebrafish
sb:eu538	sb:eu538	0.018
fabp11b	fatty acid binding protein 11b	0.018	Zebrafish
hoxa4a	homeo box A4a	0.018
dact1	dapper homolog 1, antagonist of beta-catenin (xenopus)	0.018
ss18	synovial sarcoma translocation, chromosome 18 (H. sapiens)	0.018
prrx1a	paired related homeobox 1a	0.018
zgc:100846	zgc:100846	0.018
neo1	neogenin 1	0.018
fabp10a	fatty acid binding protein 10a, liver basic	0.018
pmp22a	peripheral myelin protein 22a	0.018
hprt1	hypoxanthine phosphoribosyltransferase 1	0.018
sox32	SRY-box containing gene 32	0.018
met	met proto-oncogene (hepatocyte growth factor receptor)	0.018
apoa4	apolipoprotein A-IV	0.018
acox1	acyl-Coenzyme A oxidase 1, palmitoyl	0.017
cry3	cryptochrome 3	0.017
rras2	related RAS viral (r-ras) oncogene homolog 2	0.017
msxb	muscle segment homeobox B	0.017
sb:eu956	sb:eu956	0.017
dio2	deiodinase, iodothyronine, type II	0.017
onecut1	one cut domain, family member 1	0.017
dtnbp1a	dystrobrevin binding protein 1a	0.017
cldnc	claudin c	0.017
acta2	actin, alpha 2, smooth muscle, aorta	0.017
ptrfb	polymerase I and transcript release factor b	0.017
cyp2p6	cytochrome P450, family 2, subfamily P, polypeptide 6	0.016
gngt1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	0.016
hoxa3a	homeo box A3a	0.016
dhrs9	dehydrogenase/reductase (SDR family) member 9	0.016
cacnb4b	calcium channel, voltage-dependent, beta 4b subunit	0.016
lrrtm2	leucine rich repeat transmembrane neuronal 2	0.016
si:ch211-93f2.1	si:ch211-93f2.1	0.016
si:rp71-39b20.7	si:rp71-39b20.7	0.016
etv7	ets variant 7	0.016
otx2	orthodenticle homolog 2	0.016
ptpn12	protein tyrosine phosphatase, non-receptor type 12	0.016
zc4h2	zinc finger, C4H2 domain containing	0.015
pax3b	paired box gene 3b	0.015
irx7	iroquois homeobox protein 7	0.015
cyb5a	cytochrome b5 type A (microsomal)	0.015
pbx4	pre-B-cell leukemia transcription factor 4	0.015
nipblb	novel protein similar to vertebrate Nipped-B homolog and nipped-b homolog b (Drosophila)	0.015
igsf21a	immunoglobin superfamily, member 21a	0.015
atp1b3b	ATPase, Na+/K+ transporting, beta 3b polypeptide	0.015
znf148	zinc finger protein 148	0.015
xpo4	exportin 4	0.015
vasp	vasodilator-stimulated phosphoprotein	0.015
drd4b	dopamine receptor D4b	0.015
bambib	BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) b	0.015
znf395b	zinc finger protein 395b	0.015
pax6a	paired box gene 6a	0.015
cpa2	carboxypeptidase A2 (pancreatic)	0.015
nr3c1	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.015
zgc:64106	zgc:64106	0.015
hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.015
tshb	thyroid stimulating hormone, beta subunit	0.014
cpox	coproporphyrinogen oxidase	0.014
creld2	cysteine-rich with EGF-like domains 2	0.014
six3b	sine oculis homeobox homolog 3b	0.014
notch1a	notch homolog 1a	0.014
sb:eu2484	sb:eu2484	0.014
pitx3	paired-like homeodomain transcription factor 3	0.014	Zebrafish
rdh5	retinol dehydrogenase 5 (11-cis/9-cis)	0.014
sfrp1a	secreted frizzled-related protein 1a	0.014
acsl5	acyl-CoA synthetase long-chain family member 5	0.014
cyp3a65	cytochrome P450, family 3, subfamily A, polypeptide 65	0.014
si:dkey-97i18.2	si:dkey-97i18.2	0.014
zgc:91909	zgc:91909	0.014
tm9sf1	transmembrane 9 superfamily member 1	0.014
ildr1b	immunoglobulin-like domain containing receptor 1b	0.014
esrra	estrogen-related receptor alpha	0.014
bnc1	basonuclin 1	0.014
nyx	nyctalopin	0.013
cndp2	CNDP dipeptidase 2 (metallopeptidase M20 family)	0.013
igf2a	insulin-like growth factor 2a	0.013
setdb1b	SET domain, bifurcated 1b	0.013
sb:eu375	sb:eu375	0.013
vipr1	vasoactive intestinal peptide receptor 1	0.013
nr5a5	nuclear receptor subfamily 5, group A, member 5	0.013
snai2	snail homolog 2 (Drosophila)	0.013
LOC565839	tumor necrosis factor alpha-induced protein 2-like	0.013
hoxb1a	homeo box B1a	0.013
ncoa1	nuclear receptor coactivator 1	0.013
si:dkeyp-68f6.1	si:dkeyp-68f6.1	0.013
midn	midnolin	0.013
wif1	wnt inhibitory factor 1	0.013
tmprss4a	transmembrane protease, serine 4a	0.013
cacnb2a	calcium channel, voltage-dependent, beta 2a	0.013
chd7	chromodomain helicase DNA binding protein 7	0.013
tjp2b	tight junction protein 2b (zona occludens 2)	0.013
cry1a	cryptochrome 1a	0.013
gbx1	gastrulation brain homeobox 1	0.013
rpe65a	retinal pigment epithelium-specific protein 65a	0.013
bcl2	B-cell leukemia/lymphoma 2	0.012
adh5	alcohol dehydrogenase 5	0.012
emp2	epithelial membrane protein 2	0.012
smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.012
smtnb	smoothelin b	0.012
stat3	signal transduction and activation of transcription 3	0.012
stap2a	signal transducing adaptor family member 2a	0.012
smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	0.012
fermt1	fermitin family member 1	0.012
mta2	metastasis associated 1 family, member 2	0.012
ubr5	ubiquitin protein ligase E3 component n-recognin 5	0.012
ywhah	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	0.012
cebpa	CCAAT/enhancer binding protein (C/EBP), alpha	0.012
setd8b	SET domain containing (lysine methyltransferase) 8b	0.012
epha2	eph receptor A2	0.012
esrrb	estrogen-related receptor beta	0.012
plxna3	plexin A3	0.012
si:ch1073-184j22.1	si:ch1073-184j22.1	0.012
rs1	retinoschisis (X-linked, juvenile) 1	0.012
cldn15a	claudin 15a	0.012
ppargc1al	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha like	0.012
dmrt2a	doublesex and mab-3 related transcription factor 2a	0.012
cbsa	cystathionine-beta-synthase a	0.012
vat1	vesicle amine transport protein 1 homolog (T californica)	0.012
smoc1	SPARC related modular calcium binding 1	0.012
fscn1	fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)	0.012
irbp	interphotoreceptor retinoid-binding protein	0.012
aldh4a1	aldehyde dehydrogenase 4 family, member A1	0.012
glud1b	glutamate dehydrogenase 1b	0.012
crebbpa	CREB binding protein a	0.012
zfhx3	zinc finger homeobox 3	0.012
fn1	fibronectin 1	0.012
unc119.1	unc-119 homolog 1	0.012
abcc1	ATP-binding cassette, sub-family C, member 1	0.012
zgc:56518	zgc:56518	0.012
si:dkeyp-22b2.3	si:dkeyp-22b2.3	0.012
akt2	v-akt murine thymoma viral oncogene homolog 2	0.012
si:ch211-279m15.1	si:ch211-279m15.1	0.012
pwp2h	PWP2 periodic tryptophan protein homolog (yeast)	0.012
adcyap1r1a	adenylate cyclase activating polypeptide 1 receptor 1a	0.012
gstal	glutathione S-transferase, alpha-like	0.012
ccnh	cyclin H	0.011
snw1	SNW domain containing 1	0.011
zgc:85939	zgc:85939	0.011
zmynd19	zinc finger, MYND domain containing 19	0.011
chpt1	choline phosphotransferase 1	0.011
sb:cb81	sb:cb81	0.011
vax1	ventral anterior homeobox 1	0.011
crx	cone-rod homeobox	0.011
hoxb2a	homeo box B2a	0.011
rbpja	recombination signal binding protein for immunoglobulin kappa J region a	0.011
si:dkey-228g21.4	si:dkey-228g21.4	0.011
lmna	lamin A	0.011
fyna	FYN oncogene related to SRC, FGR, YES a	0.011
chrna1	cholinergic receptor, nicotinic, alpha polypeptide 1	0.011
drd1	dopamine receptor D1	0.011
tcf7l1b	transcription factor 7-like 1b (T-cell specific, HMG-box)	0.011
LOC562316	klotho-like	0.011
crim1	cysteine rich transmembrane BMP regulator 1 (chordin like)	0.011
hadha	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit	0.011
hoxb5a	homeo box B5a	0.011
tp63	tumor protein p63	0.011
rorcb	RAR-related orphan receptor C b	0.011
drd4-rs	dopamine receptor D4 related sequence	0.011
hand2	heart and neural crest derivatives expressed transcript 2	0.011
her1	hairy-related 1	0.011
pgp	phosphoglycolate phosphatase	0.011
si:ch211-216l23.1	si:ch211-216l23.1	0.011
slc6a8	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	0.011
mtx1b	metaxin 1b	0.011
tuba1	tubulin, alpha 1	0.011
zgc:92027	zgc:92027	0.011
angptl7	angiopoietin-like 7	0.011
ltv1	LTV1 homolog (S. cerevisiae)	0.011
rpgrb	retinitis pigmentosa GTPase regulator b	0.011
rbp7b	retinol binding protein 7b, cellular	0.011	Zebrafish
ptgs2a	prostaglandin-endoperoxide synthase 2a	0.011
atp1b3a	ATPase, Na+/K+ transporting, beta 3a polypeptide	0.011
ankrd6	ankyrin repeat domain 6	0.011
cxcl12b	chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1)	0.011
gng13b	guanine nucleotide binding protein (G protein), gamma 13b	0.011
hey1	hairy/enhancer-of-split related with YRPW motif 1	0.010
zgc:110343	zgc:110343	0.010
lss	lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)	0.010
fgf1	fibroblast growth factor 1	0.010
kirrel3l	kin of IRRE like 3 like	0.010
sb:cb451	sb:cb451	0.010
six2a	sine oculis-related homeobox 2a	0.010
flrt3	fibronectin leucine rich transmembrane 3	0.010
im:6893790	im:6893790	0.010
rtn3	reticulon 3	0.010
rgrb	retinal G protein coupled receptor b	0.010
ada	adenosine deaminase	0.010
nr2e3	nuclear receptor subfamily 2, group E, member 3	0.010
si:dkey-261h17.1	si:dkey-261h17.1	0.010
prrc1	proline-rich coiled-coil 1	0.010
hoxa9a	homeo box A9a	0.010
trim24	tripartite motif-containing 24	0.010
hbae3	hemoglobin alpha embryonic-3	0.010
acvr2a	activin receptor IIa	0.010
fgfr4	fibroblast growth factor receptor 4	0.010
ptger1a	prostaglandin E receptor 1, subtype EP1a	0.010
alcamb	activated leukocyte cell adhesion molecule b	0.010
ncoa6	nuclear receptor coactivator 6	0.010
zgc:113421	zgc:113421	0.010
thrb	thyroid hormone receptor beta	0.010	Zebrafish