IMP

Process View

Danio rerio

1 genes annotated in zebrafish

regulation of transcription involved in cell fate commitment

Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "regulation of transcription involved in cell fate commitment"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "regulation of transcription involved in cell fate commitment" (in gray)

Name	Description	Probability	Func Analog Organism
dlx5a	distal-less homeobox gene 5a	0.981
bmp2b	bone morphogenetic protein 2b	0.978	Human Zebrafish
bmp4	bone morphogenetic protein 4	0.964
chd	chordin	0.956
col2a1a	collagen type II, alpha-1a	0.878
dlx2a	distal-less homeobox gene 2a	0.877
msxc	muscle segment homeobox C	0.865
fgf24	fibroblast growth factor 24	0.854
nkx2.2a	NK2 transcription factor related 2a	0.690
osr1	odd-skipped related 1 (Drosophila)	0.675
sox9b	SRY-box containing gene 9b	0.661
dlx4a	distal-less homeobox gene 4a	0.612
tcf7	transcription factor 7 (T-cell specific, HMG-box)	0.586
eve1	even-skipped-like1	0.410
otx2	orthodenticle homolog 2	0.404
msxd	muscle segment homeobox D	0.398
dlx3b	distal-less homeobox gene 3b	0.394
nkx6.1	NK6 transcription factor related, locus 1 (Drosophila)	0.362	Mouse
nkx2.5	NK2 transcription factor related 5	0.252
sp7	Sp7 transcription factor	0.251
tpbgl	trophoblast glycoprotein-like	0.242
bglap	bone gamma-carboxyglutamate (gla) protein	0.225
ascl1a	achaete-scute complex-like 1a (Drosophila)	0.222
dlx1a	distal-less homeobox gene 1a	0.212	Mouse
fgf3	fibroblast growth factor 3	0.210
fezf2	FEZ family zinc finger 2	0.205
mab21l2	mab-21-like 2	0.188
foxa2	forkhead box A2	0.172
cyp26a1	cytochrome P450, subfamily XXVIA, polypeptide 1	0.156
dlx4b	distal-less homeobox gene 4b	0.152
tgfb3	transforming growth factor, beta 3	0.151
bmp2a	bone morphogenetic protein 2a	0.149	Human Zebrafish
bon	bonnie and clyde	0.149
dcc	deleted in colorectal carcinoma	0.140
hoxd11a	homeo box D11a	0.140
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.132
msxe	muscle segment homeobox E	0.122
hoxd10a	homeo box D10a	0.116
cyp11a1	cytochrome P450, subfamily XIA, polypeptide 1	0.116
sox9a	SRY-box containing gene 9a	0.114
gata3	GATA-binding protein 3	0.114
hoxa11b	homeo box A11b	0.112
hoxa13b	homeo box A13b	0.105
hoxa9b	homeo box A9b	0.096
irf6	interferon regulatory factor 6	0.096
gata6	GATA-binding protein 6	0.092
prdm1a	PR domain containing 1a, with ZNF domain	0.091
otx1a	orthodenticle homolog 1a	0.088
dlx6a	distal-less homeobox gene 6a	0.084
vent	ventral expressed homeobox	0.083
hoxa10b	homeo box A10b	0.081
mtp	microsomal triglyceride transfer protein	0.077
pax6b	paired box gene 6b	0.077	Mouse
zic1	zic family member 1 (odd-paired homolog, Drosophila)	0.077
prox1	prospero-related homeobox gene 1	0.076
acvr1b	activin A receptor, type IB	0.075
prickle1a	prickle-like 1 (Drosophila) a	0.071
dlx2b	distal-less homeobox gene 2b	0.071	Mouse
hoxd13a	homeo box D13a	0.069
unc5b	unc-5 homolog B (C. elegans)	0.068
msxa	muscle segment homeobox A	0.068
foxa3	forkhead box A3	0.066
gata5	GATA-binding protein 5	0.064
ihha	Indian hedgehog homolog a	0.061
nkx6.2	NK6 transcription factor related, locus 2	0.060	Mouse
otpb	orthopedia homolog b	0.057
hoxc1a	homeo box C1a	0.057
lrrn1	leucine rich repeat neuronal 1	0.056
pbx1a	pre-B-cell leukemia transcription factor 1a	0.056
olig4	oligodendrocyte transcription factor 4	0.056
fgf20a	fibroblast growth factor 20a	0.053
gata2a	GATA-binding protein 2a	0.052
sall4	sal-like 4 (Drosophila)	0.048
bambia	BMP and activin membrane-bound inhibitor (Xenopus laevis) homolog a	0.047
lft1	lefty1	0.046
pou3f3a	POU class 3 homeobox 3a	0.045
hoxd9a	homeo box D9a	0.044
foxp2	forkhead box P2	0.044
msxb	muscle segment homeobox B	0.044
epha4b	eph receptor A4b	0.043
sox17	SRY-box containing gene 17	0.043	Mouse
vox	ventral homeobox	0.042
twist3	twist3	0.042
vsx2	visual system homeobox 2	0.041
gdf6a	growth differentiation factor 6a	0.041
mgp	matrix Gla protein	0.041
zgc:171553	zgc:171553	0.040
cx43	connexin 43	0.040
admp	anti-dorsalizing morphogenic protein	0.040
met	met proto-oncogene (hepatocyte growth factor receptor)	0.039
cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1	0.038
pitx3	paired-like homeodomain transcription factor 3	0.036
apoeb	apolipoprotein Eb	0.036
emx3	empty spiracles homeobox 3	0.035
cdx4	caudal type homeo box transcription factor 4	0.035
six3b	sine oculis homeobox homolog 3b	0.035
junb	jun B proto-oncogene	0.034
dkk1b	dickkopf 1b	0.034
pax7a	paired box gene 7a	0.034
lhx1a	LIM homeobox 1a	0.034
hoxc9a	homeo box C9a	0.034
dmbx1a	diencephalon/mesencephalon homeobox 1a	0.033
pitx2	paired-like homeodomain transcription factor 2	0.033
zic2a	zic family member 2 (odd-paired homolog, Drosophila), a	0.033
evx1	even-skipped homeobox 1	0.033	Mouse
shhb	sonic hedgehog b	0.033
cadm3	cell adhesion molecule 3	0.033
prickle2	prickle-like 2 (Drosophila)	0.032
zgc:111821	zgc:111821	0.032
ved	ventrally expressed dharma/bozozok antagonist	0.032
fgf10a	fibroblast growth factor 10a	0.031
spry4	sprouty (Drosophila) homolog 4	0.031
foxg1a	forkhead box G1a	0.031
pthlh	parathyroid hormone-like hormone	0.031
atoh1a	atonal homolog 1a	0.030
nr2e1	nuclear receptor subfamily 2, group E, member 1	0.030
myh11a	myosin, heavy polypeptide 11, smooth muscle a	0.028
tbx4	T-box 4	0.028
pnx	posterior neuron-specific homeobox	0.028
arx	aristaless related homeobox	0.028
nanos3	nanos homolog 3	0.027
isl1	islet1	0.027
dmrta2	doublesex and mab-3 related transcription factor like family A2	0.027
clstn1	calsyntenin 1	0.027
hoxd4a	homeo box D4a	0.026
hoxa11a	homeo box A11a	0.026
ptgds	prostaglandin D2 synthase	0.026
th	tyrosine hydroxylase	0.025
cdx1a	caudal type homeo box transcription factor 1 a	0.025
scinla	scinderin like a	0.025
sfrp5	secreted frizzled-related protein 5	0.025
mpp1	membrane protein, palmitoylated 1	0.024
col10a1	collagen, type X, alpha 1	0.024
hoxa9a	homeo box A9a	0.023
ek1	eph-like kinase 1	0.023
mdkb	midkine-related growth factor b	0.023
dact1	dapper homolog 1, antagonist of beta-catenin (xenopus)	0.023
fzd5	frizzled homolog 5	0.023
ins	preproinsulin	0.023
gcga	glucagon a and glucagon a-like	0.023
bmp7a	bone morphogenetic protein 7a	0.022
irx7	iroquois homeobox protein 7	0.022
tbx18	T-box 18	0.021
rhov	ras homolog gene family, member V	0.021
her6	hairy-related 6	0.020
hoxd12a	homeo box D12a	0.020
junbl	jun B proto-oncogene, like	0.020
socs3a	suppressor of cytokine signaling 3a	0.020
cadm1b	cell adhesion molecule 1b	0.020
sst1.1	somatostatin 1, tandem duplicate 1	0.019
olig2	oligodendrocyte lineage transcription factor 2	0.019
spon1b	spondin 1b	0.019
runx2a	runt-related transcription factor 2a	0.019
foxa1	forkhead box A1	0.019
shha	sonic hedgehog a	0.019
eomesa	eomesodermin homolog a	0.019
lhx6	LIM homeobox 6	0.018
gli3	GLI-Kruppel family member GLI3	0.018
hdac4	histone deacetylase 4	0.018
flh	floating head	0.018
hgfa	hepatocyte growth factor a	0.018
hoxc10a	homeo box C10a and homeobox protein Hox-C10a-like	0.018
gdf6b	growth differentiation factor 6b	0.018
barhl2	BarH-like 2	0.018
hoxc13a	homeo box C13a	0.018
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.018
neurod	neurogenic differentiation	0.017
dnmt8	DNA (cytosine-5-)-methyltransferase 8	0.017
neurod4	neurogenic differentiation 4	0.017
foxh1	forkhead box H1	0.016
lhx1b	LIM homeobox 1b	0.016
gata4	GATA-binding protein 4	0.016
lmo3	LIM domain only 3	0.016
cd63	Cd63 antigen	0.016
insb	preproinsulin b	0.016
pcdh8	protocadherin 8	0.016
six3a	sine oculis homeobox homolog 3a	0.016
cyp19a1b	cytochrome P450, family 19, subfamily A, polypeptide 1b	0.016
pax4	paired box 4	0.016
lhx5	LIM homeobox 5	0.016
lypd6	LY6/PLAUR domain containing 6	0.016
sox19b	SRY-box containing gene 19b	0.015
tnc	tenascin C	0.015
msgn1	mesogenin 1	0.015
cebpa	CCAAT/enhancer binding protein (C/EBP), alpha	0.015
axin2	axin 2 (conductin, axil)	0.015
sec31a	sec31 homolog A (S. cerevisiae)	0.015
atf3	activating transcription factor 3	0.015
her7	hairy and enhancer of split related-7	0.015
tbx2b	T-box 2b	0.014
dharma	dharma	0.014
ptch1	patched 1	0.014
tshz1	teashirt family zinc finger 1	0.014
fzd10	frizzled homolog 10	0.014
ascl1b	achaete-scute complex-like 1b (Drosophila)	0.014
irx5a	iroquois homeobox protein 5a	0.014
ghsra	growth hormone secretagogue receptor a	0.014
nkx2.2b	NK2 transcription factor related 2b	0.014
igfbp1a	insulin-like growth factor binding protein 1a	0.014
rag1	recombination activating gene 1	0.014
lhx8a	LIM homeobox 8a	0.013
cdon	cell adhesion molecule-related/down-regulated by oncogenes	0.013
zic3	zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila)	0.013
pou3f3b	POU class 3 homeobox 3b	0.013
adipoql	adiponectin, C1Q and collagen domain containing, like	0.013
foxn4	forkhead box N4	0.013
ptf1a	pancreas specific transcription factor, 1a	0.013
pax8	paired box gene 8	0.013
btbd2	BTB (POZ) domain containing 2	0.013
barx1	BarH-like homeobox 1	0.013
efna5a	ephrin A5a	0.013
og9x	OG9 homeobox gene	0.013
rpl37	ribosomal protein L37	0.013
bsk146	brain specific kinase 146	0.013
ptch2	patched 2	0.013
sox2	SRY-box containing gene 2	0.013
tp63	tumor protein p63	0.013
bokb	BCL2-related ovarian killer b	0.013
hoxb1b	homeo box B1b	0.012
zgc:92758	zgc:92758	0.012
cyp26c1	cytochrome P450, family 26, subfamily C, polypeptide 1	0.012
her5	hairy-related 5	0.012
zgc:100919	zgc:100919	0.012
foxi1	forkhead box I1	0.012
tbpl2	TATA box binding protein like 2	0.012
depdc1a	DEP domain containing 1a	0.012
cdh1	cadherin 1, epithelial	0.012
her8a	hairy-related 8a	0.012
nr4a3	nuclear receptor subfamily 4, group A, member 3	0.012
six4a	sine oculis homeobox homolog 4a	0.012
spns2	spinster homolog 2 (Drosophila)	0.012
hhex	hematopoietically expressed homeobox	0.012
si:dkey-228g21.4	si:dkey-228g21.4	0.012
dachb	dachshund b	0.012
ntla	no tail a	0.012
rarab	retinoic acid receptor, alpha b	0.012
ppdpfb	pancreatic progenitor cell differentiation and proliferation factor b	0.012
ncor2	nuclear receptor co-repressor 2	0.012
itpk1	inositol 1,3,4-triphosphate 5/6 kinase	0.011
celf2	cugbp, Elav-like family member 2	0.011
nog3	noggin 3	0.011
pob	partial optokinetic response b	0.011
ef1	ETS-related factor1	0.011
gbx1	gastrulation brain homeobox 1	0.011
cebpd	CCAAT/enhancer binding protein (C/EBP), delta	0.011
zar1	zygote arrest 1	0.011
LOC100000500	sclerostin-like	0.011
gli1	GLI-Kruppel family member 1	0.011
gadd45aa	growth arrest and DNA-damage-inducible, alpha, a	0.011
buc	bucky ball	0.011
gbx2	gastrulation brain homeo box 2	0.011
dopey1	dopey family member 1	0.011
efna3b	ephrin A3b	0.011
hsf2	heat shock factor 2	0.010
zgc:163008	zgc:163008	0.010
im:7142877	im:7142877	0.010
slc6a8	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	0.010
gsc	goosecoid	0.010
ets2	v-ets erythroblastosis virus E26 oncogene homolog 2 (avian)	0.010
onecut1	one cut domain, family member 1	0.010
fabp2	fatty acid binding protein 2, intestinal	0.010
syne1a	spectrin repeat containing, nuclear envelope 1a	0.010