IMP

Process View

Mus musculus

4 genes annotated in mouse

Multi-species View

somite specification

GO:0001757

The process in which individual somites establish identity during embryogenesis.

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Known genes in the process in mouse Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "somite specification"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "somite specification" (in gray)

Name	Description	Probability	Func Analog Organism
Notch1	Notch gene homolog 1 (Drosophila)	1.000
Psen1	presenilin 1	1.000
Dll1	delta-like 1 (Drosophila)	1.000
Notch2	Notch gene homolog 2 (Drosophila)	1.000
Vangl2	vang-like 2 (van gogh, Drosophila)	1.000
Foxc1	forkhead box C1	1.000
Chd7	chromodomain helicase DNA binding protein 7	0.999
Fgfr1	fibroblast growth factor receptor 1	0.999
Pax3	paired box gene 3	0.999
Rb1	retinoblastoma 1	0.997
Shh	sonic hedgehog	0.995
Gli3	GLI-Kruppel family member GLI3	0.995
Pitx2	paired-like homeodomain transcription factor 2	0.995
Six1	sine oculis-related homeobox 1 homolog (Drosophila)	0.994
Foxc2	forkhead box C2	0.992
Fgfr2	fibroblast growth factor receptor 2	0.989
Efnb2	ephrin B2	0.989
Ctnnb1	catenin (cadherin associated protein), beta 1	0.987
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	0.983	Zebrafish
Eya1	eyes absent 1 homolog (Drosophila)	0.980
Foxg1	forkhead box G1	0.978
Jag1	jagged 1	0.967	Mouse
Hes1	hairy and enhancer of split 1 (Drosophila)	0.951
Lfng	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	0.943
Meox2	mesenchyme homeobox 2	0.940
Pax2	paired box gene 2	0.937
Mycn	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	0.934
Sox2	SRY-box containing gene 2	0.923
Sox11	SRY-box containing gene 11	0.886
Bmp4	bone morphogenetic protein 4	0.797
Tgfb2	transforming growth factor, beta 2	0.784
Zeb1	zinc finger E-box binding homeobox 1	0.775
Jag2	jagged 2	0.772	Mouse
Cdkn1b	cyclin-dependent kinase inhibitor 1B	0.679
Kras	v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	0.658
Tbx1	T-box 1	0.654
Vegfa	vascular endothelial growth factor A	0.624
Hoxa1	homeobox A1	0.582
Nog	noggin	0.569
Lrp6	low density lipoprotein receptor-related protein 6	0.567
Ptch1	patched homolog 1	0.566
Otx2	orthodenticle homolog 2 (Drosophila)	0.535
Gli2	GLI-Kruppel family member GLI2	0.530
Dll4	delta-like 4 (Drosophila)	0.484	Mouse
Gata3	GATA binding protein 3	0.474
Fgf8	fibroblast growth factor 8	0.425
Prrx1	paired related homeobox 1	0.407
Itgb1	integrin beta 1 (fibronectin receptor beta)	0.395
Gbx2	gastrulation brain homeobox 2	0.383
Tcfap2a	transcription factor AP-2, alpha	0.382
Ror2	receptor tyrosine kinase-like orphan receptor 2	0.370
Tbx10	T-box 10	0.347
Psen2	presenilin 2	0.346
Kitl	kit ligand	0.323
Pdgfra	platelet derived growth factor receptor, alpha polypeptide	0.274
Fgfr3	fibroblast growth factor receptor 3	0.271
Msx1	homeobox, msh-like 1	0.231
Tbx18	T-box18	0.212
Gata4	GATA binding protein 4	0.195
Ptk7	PTK7 protein tyrosine kinase 7	0.188
Rarg	retinoic acid receptor, gamma	0.167
Six4	sine oculis-related homeobox 4 homolog (Drosophila)	0.164
Mmp14	matrix metallopeptidase 14 (membrane-inserted)	0.160
Hes5	hairy and enhancer of split 5 (Drosophila)	0.159
Isl1	ISL1 transcription factor, LIM/homeodomain	0.158
Mks1	Meckel syndrome, type 1	0.153
Eng	endoglin	0.140
Rarb	retinoic acid receptor, beta	0.131
Bmp7	bone morphogenetic protein 7	0.126
Smo	smoothened homolog (Drosophila)	0.121
Sox4	SRY-box containing gene 4	0.118
Nrarp	Notch-regulated ankyrin repeat protein	0.117
Emx2	empty spiracles homolog 2 (Drosophila)	0.110
Otx1	orthodenticle homolog 1 (Drosophila)	0.103
Uncx	UNC homeobox	0.102
Notch3	Notch gene homolog 3 (Drosophila)	0.100
D930020E02Rik	RIKEN cDNA D930020E02 gene	0.097
Pax6	paired box gene 6	0.096
Lmx1a	LIM homeobox transcription factor 1 alpha	0.089
Neurl1a	neuralized homolog 1A (Drosophila)	0.089
Ntf3	neurotrophin 3	0.089
Pax1	paired box gene 1	0.084
Tnnc2	troponin C2, fast	0.084
Prrx2	paired related homeobox 2	0.083
Pten	phosphatase and tensin homolog	0.083
Pkd1	polycystic kidney disease 1 homolog	0.082
Mesp2	mesoderm posterior 2	0.081
Cacng1	calcium channel, voltage-dependent, gamma subunit 1	0.081
Aldh1a2	aldehyde dehydrogenase family 1, subfamily A2	0.080
Dlx5	distal-less homeobox 5	0.078
Hey2	hairy/enhancer-of-split related with YRPW motif 2	0.074
Rpl38	ribosomal protein L38	0.073
Zic3	zinc finger protein of the cerebellum 3	0.071
Pcsk5	proprotein convertase subtilisin/kexin type 5	0.071
Tbk1	TANK-binding kinase 1	0.068
T	brachyury	0.067
Cited2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	0.065
Gja1	gap junction protein, alpha 1	0.065
Kit	kit oncogene	0.062
Zfpm2	zinc finger protein, multitype 2	0.062
Emx1	empty spiracles homolog 1 (Drosophila)	0.060
Tax1bp1	Tax1 (human T-cell leukemia virus type I) binding protein 1	0.060
Wnt3a	wingless-related MMTV integration site 3A	0.058
Gsc	goosecoid homeobox	0.057
Apaf1	apoptotic peptidase activating factor 1	0.055
Tnnt3	troponin T3, skeletal, fast	0.053
Mn1	meningioma 1	0.052
Tnni2	troponin I, skeletal, fast 2	0.052
Smad4	MAD homolog 4 (Drosophila)	0.052
Rxra	retinoid X receptor alpha	0.052
Sox9	SRY-box containing gene 9	0.051
Ptf1a	pancreas specific transcription factor, 1a	0.049
Pax7	paired box gene 7	0.048
Fgf10	fibroblast growth factor 10	0.047
Hspg2	perlecan (heparan sulfate proteoglycan 2)	0.046
Egfr	epidermal growth factor receptor	0.045
Hoxa5	homeobox A5	0.045
Pofut1	protein O-fucosyltransferase 1	0.043
Casq1	calsequestrin 1	0.043
Myf6	myogenic factor 6	0.042
Ebf3	early B-cell factor 3	0.042
Apc	adenomatosis polyposis coli	0.042
Myl3	myosin, light polypeptide 3	0.041
Tcf15	transcription factor 15	0.041
Ldb3	LIM domain binding 3	0.040
Hand2	heart and neural crest derivatives expressed transcript 2	0.040
Adam19	a disintegrin and metallopeptidase domain 19 (meltrin beta)	0.040
Sox7	SRY-box containing gene 7	0.039
Cdkn1a	cyclin-dependent kinase inhibitor 1A (P21)	0.039
Trp63	transformation related protein 63	0.037
Ikbkg	inhibitor of kappaB kinase gamma	0.036
Sox18	SRY-box containing gene 18	0.035
Myf5	myogenic factor 5	0.035
Insm1	insulinoma-associated 1	0.033
Dll3	delta-like 3 (Drosophila)	0.033	Zebrafish Mouse
Bmp2	bone morphogenetic protein 2	0.032
Irf6	interferon regulatory factor 6	0.030
Bdnf	brain derived neurotrophic factor	0.030
Actn3	actinin alpha 3	0.029
Efnb1	ephrin B1	0.029
Meox1	mesenchyme homeobox 1	0.029
Myom2	myomesin 2	0.029
Msx2	homeobox, msh-like 2	0.029
Smad1	MAD homolog 1 (Drosophila)	0.029
Krt15	keratin 15	0.028
Myh8	myosin, heavy polypeptide 8, skeletal muscle, perinatal	0.028
Hoxb6	homeobox B6	0.028
Col13a1	collagen, type XIII, alpha 1	0.028
Bcl6b	B-cell CLL/lymphoma 6, member B	0.028
Ednra	endothelin receptor type A	0.028
Klf3	Kruppel-like factor 3 (basic)	0.027
Ankrd2	ankyrin repeat domain 2 (stretch responsive muscle)	0.027
Pou4f3	POU domain, class 4, transcription factor 3	0.026
Mib1	mindbomb homolog 1 (Drosophila)	0.025
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	0.025
Foxo1	forkhead box O1	0.025
Tbx15	T-box 15	0.025
Col2a1	collagen, type II, alpha 1	0.024
Twist2	twist homolog 2 (Drosophila)	0.024
Pkd2	polycystic kidney disease 2	0.024
Tbx3	T-box 3	0.024
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	0.023
Foxf2	forkhead box F2	0.023
Map3k7	mitogen-activated protein kinase kinase kinase 7	0.022
Ryr1	ryanodine receptor 1, skeletal muscle	0.022
Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	0.022
Slc12a2	solute carrier family 12, member 2	0.021
Pbx1	pre B-cell leukemia transcription factor 1	0.021
Hey1	hairy/enhancer-of-split related with YRPW motif 1	0.021
Wnt4	wingless-related MMTV integration site 4	0.021
Bmpr1a	bone morphogenetic protein receptor, type 1A	0.021
Myog	myogenin	0.020
Myh1	myosin, heavy polypeptide 1, skeletal muscle, adult	0.020	Zebrafish
Hhex	hematopoietically expressed homeobox	0.020
Mybph	myosin binding protein H	0.020
Cxcr7	chemokine (C-X-C motif) receptor 7	0.020
Esr1	estrogen receptor 1 (alpha)	0.020
Myoz1	myozenin 1	0.020
Sox17	SRY-box containing gene 17	0.019
Tgfbr2	transforming growth factor, beta receptor II	0.019
Myh2	myosin, heavy polypeptide 2, skeletal muscle, adult	0.019
Sp6	trans-acting transcription factor 6	0.019
Nr2f1	nuclear receptor subfamily 2, group F, member 1	0.019
Foxf1a	forkhead box F1a	0.018
Ptpn11	protein tyrosine phosphatase, non-receptor type 11	0.018
Rspo2	R-spondin 2 homolog (Xenopus laevis)	0.018
Sall4	sal-like 4 (Drosophila)	0.018
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	0.018
Hmx3	H6 homeobox 3	0.017
Lrp4	low density lipoprotein receptor-related protein 4	0.017
Myo6	myosin VI	0.017
Col17a1	collagen, type XVII, alpha 1	0.017
Rdh10	retinol dehydrogenase 10 (all-trans)	0.017
Wnt5a	wingless-related MMTV integration site 5A	0.016
En1	engrailed 1	0.016
Lbx1	ladybird homeobox homolog 1 (Drosophila)	0.016
Ier5l	immediate early response 5-like	0.016
Sox3	SRY-box containing gene 3	0.016
Pou3f1	POU domain, class 3, transcription factor 1	0.016
Phlda2	pleckstrin homology-like domain, family A, member 2	0.016
Hif1a	hypoxia inducible factor 1, alpha subunit	0.016
Pdgfrb	platelet derived growth factor receptor, beta polypeptide	0.015
Efs	embryonal Fyn-associated substrate	0.015
Hoxa3	homeobox A3	0.015
Arvcf	armadillo repeat gene deleted in velo-cardio-facial syndrome	0.015
Col15a1	collagen, type XV, alpha 1	0.015
Rasip1	Ras interacting protein 1	0.015
Cldn5	claudin 5	0.015
Lrp2	low density lipoprotein receptor-related protein 2	0.015
Tcfap2c	transcription factor AP-2, gamma	0.015
Spry2	sprouty homolog 2 (Drosophila)	0.015
Fgfrl1	fibroblast growth factor receptor-like 1	0.015
Hand1	heart and neural crest derivatives expressed transcript 1	0.014
She	src homology 2 domain-containing transforming protein E	0.014
Lama5	laminin, alpha 5	0.014
Efna1	ephrin A1	0.014
Sfrp2	secreted frizzled-related protein 2	0.014
Prdm1	PR domain containing 1, with ZNF domain	0.014
Popdc3	popeye domain containing 3	0.014
Robo4	roundabout homolog 4 (Drosophila)	0.014
Acan	aggrecan	0.014
Adam17	a disintegrin and metallopeptidase domain 17	0.014
Bnc1	basonuclin 1	0.014
Eya4	eyes absent 4 homolog (Drosophila)	0.013
Zic1	zinc finger protein of the cerebellum 1	0.013
Tnni1	troponin I, skeletal, slow 1	0.013
Sema5b	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	0.013
Dlx2	distal-less homeobox 2	0.013
Pax9	paired box gene 9	0.013
Irx3	Iroquois related homeobox 3 (Drosophila)	0.013
Dicer1	Dicer1, Dcr-1 homolog (Drosophila)	0.013
Srrm4	serine/arginine repetitive matrix 4	0.013
Sall1	sal-like 1 (Drosophila)	0.013
Cxcl12	chemokine (C-X-C motif) ligand 12	0.013
Fuz	fuzzy homolog (Drosophila)	0.013
Trp73	transformation related protein 73	0.013
Hrc	histidine rich calcium binding protein	0.013
Lef1	lymphoid enhancer binding factor 1	0.013
Crym	crystallin, mu	0.013
Vstm2b	V-set and transmembrane domain containing 2B	0.012
Tbx2	T-box 2	0.012
Ece1	endothelin converting enzyme 1	0.012
Hoxa10	homeobox A10	0.012
Erlin2	ER lipid raft associated 2	0.012
Actn2	actinin alpha 2	0.012
Rhbdl3	rhomboid, veinlet-like 3 (Drosophila)	0.012
Cited1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	0.012
Ovol2	ovo-like 2 (Drosophila)	0.012
Hoxd1	homeobox D1	0.012
Actc1	actin, alpha, cardiac muscle 1	0.012
Slc33a1	solute carrier family 33 (acetyl-CoA transporter), member 1	0.012
Dkk1	dickkopf homolog 1 (Xenopus laevis)	0.012
Tbx4	T-box 4	0.012
Gas1	growth arrest specific 1	0.011
Nkx2-5	NK2 transcription factor related, locus 5 (Drosophila)	0.011
Hoxd8	homeobox D8	0.011
Mycl1	v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)	0.011
Hmga2	high mobility group AT-hook 2	0.011
Myl1	myosin, light polypeptide 1	0.011
Pitx1	paired-like homeodomain transcription factor 1	0.011
Gcm1	glial cells missing homolog 1 (Drosophila)	0.011
Chrna1	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	0.011
Ptch2	patched homolog 2	0.011
Efna2	ephrin A2	0.011
Rnft1	ring finger protein, transmembrane 1	0.011
Necab2	N-terminal EF-hand calcium binding protein 2	0.011
Kcnq1	potassium voltage-gated channel, subfamily Q, member 1	0.011
Egfl7	EGF-like domain 7	0.011
Chrd	chordin	0.011
Col25a1	collagen, type XXV, alpha 1	0.011
Acvr1	activin A receptor, type 1	0.011
Itga3	integrin alpha 3	0.011
Crlf1	cytokine receptor-like factor 1	0.011
Golph3	golgi phosphoprotein 3	0.011
Rpl3l	ribosomal protein L3-like	0.011
Cox8b	cytochrome c oxidase, subunit VIIIb	0.010
Hpca	hippocalcin	0.010
Trp53	transformation related protein 53	0.010
Irx1	Iroquois related homeobox 1 (Drosophila)	0.010
Edn3	endothelin 3	0.010
Cys1	cystin 1	0.010
Agrn	agrin	0.010
Dlx1	distal-less homeobox 1	0.010