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Mus musculus

1 genes annotated in mouse

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inner cell mass cellular morphogenesis

GO:0001828

The morphogenesis of cells in the inner cell mass.

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Known genes in the process in mouse Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "inner cell mass cellular morphogenesis"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "inner cell mass cellular morphogenesis" (in gray)

Name	Description	Probability	Func Analog Organism
Gli3	GLI-Kruppel family member GLI3	1.000
Shh	sonic hedgehog	1.000
Fgfr2	fibroblast growth factor receptor 2	0.999
Pax3	paired box gene 3	0.999
Bmp4	bone morphogenetic protein 4	0.994
Isl1	ISL1 transcription factor, LIM/homeodomain	0.993
Six1	sine oculis-related homeobox 1 homolog (Drosophila)	0.992
Fgf8	fibroblast growth factor 8	0.989
Tcfap2a	transcription factor AP-2, alpha	0.987
Foxc1	forkhead box C1	0.987
Otx2	orthodenticle homolog 2 (Drosophila)	0.972
Eya1	eyes absent 1 homolog (Drosophila)	0.970
Msx1	homeobox, msh-like 1	0.965
Tgfb2	transforming growth factor, beta 2	0.958
Prrx1	paired related homeobox 1	0.958
Sox9	SRY-box containing gene 9	0.948	Mouse
Fgfr1	fibroblast growth factor receptor 1	0.946
Foxc2	forkhead box C2	0.937
Meox2	mesenchyme homeobox 2	0.934
Gli2	GLI-Kruppel family member GLI2	0.920
Hand1	heart and neural crest derivatives expressed transcript 1	0.908
Fgf10	fibroblast growth factor 10	0.901
Pitx2	paired-like homeodomain transcription factor 2	0.896
Pax6	paired box gene 6	0.894
Sox11	SRY-box containing gene 11	0.893	Mouse
Smo	smoothened homolog (Drosophila)	0.893
Zeb1	zinc finger E-box binding homeobox 1	0.852
Pax2	paired box gene 2	0.818
Bmp7	bone morphogenetic protein 7	0.815
Tbx1	T-box 1	0.802
Fgfr3	fibroblast growth factor receptor 3	0.801
Chd7	chromodomain helicase DNA binding protein 7	0.792
Pdgfra	platelet derived growth factor receptor, alpha polypeptide	0.789
Hand2	heart and neural crest derivatives expressed transcript 2	0.777
Rarb	retinoic acid receptor, beta	0.777
Efnb2	ephrin B2	0.765
Foxg1	forkhead box G1	0.718
Jag1	jagged 1	0.628
Vangl2	vang-like 2 (van gogh, Drosophila)	0.610
Dlx5	distal-less homeobox 5	0.594
Gbx2	gastrulation brain homeobox 2	0.587
Ror2	receptor tyrosine kinase-like orphan receptor 2	0.561
Nog	noggin	0.533
Nf1	neurofibromatosis 1	0.530
Sox4	SRY-box containing gene 4	0.512	Mouse
Ctnnb1	catenin (cadherin associated protein), beta 1	0.483
Sox2	SRY-box containing gene 2	0.451	Mouse
Ntf3	neurotrophin 3	0.432
Ednra	endothelin receptor type A	0.398
Rarg	retinoic acid receptor, gamma	0.375
Hes1	hairy and enhancer of split 1 (Drosophila)	0.358
Alx4	aristaless-like homeobox 4	0.335
Col2a1	collagen, type II, alpha 1	0.331
Ret	ret proto-oncogene	0.326
Col1a1	collagen, type I, alpha 1	0.321
She	src homology 2 domain-containing transforming protein E	0.306
Ptch1	patched homolog 1	0.303
Chrd	chordin	0.299
Emx1	empty spiracles homolog 1 (Drosophila)	0.283
Nkx2-5	NK2 transcription factor related, locus 5 (Drosophila)	0.272
Hoxa1	homeobox A1	0.258
Pbx1	pre B-cell leukemia transcription factor 1	0.254
Prrx2	paired related homeobox 2	0.243
Gata4	GATA binding protein 4	0.240
Vegfa	vascular endothelial growth factor A	0.229
Mycn	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	0.220
Rspo2	R-spondin 2 homolog (Xenopus laevis)	0.213
Sox17	SRY-box containing gene 17	0.205
Pou5f1	POU domain, class 5, transcription factor 1	0.193
Six4	sine oculis-related homeobox 4 homolog (Drosophila)	0.185
Hes5	hairy and enhancer of split 5 (Drosophila)	0.171
Aldh1a2	aldehyde dehydrogenase family 1, subfamily A2	0.171
Sall4	sal-like 4 (Drosophila)	0.170
Sall3	sal-like 3 (Drosophila)	0.168
Ptpn11	protein tyrosine phosphatase, non-receptor type 11	0.166
Hspg2	perlecan (heparan sulfate proteoglycan 2)	0.157
Rb1	retinoblastoma 1	0.154
Otx1	orthodenticle homolog 1 (Drosophila)	0.153
Ptprb	protein tyrosine phosphatase, receptor type, B	0.145
Cldn5	claudin 5	0.140
Alx3	aristaless-like homeobox 3	0.139
Msx2	homeobox, msh-like 2	0.138
Alx1	ALX homeobox 1	0.136
Emx2	empty spiracles homolog 2 (Drosophila)	0.131
Gsc	goosecoid homeobox	0.110
Fgf3	fibroblast growth factor 3	0.103
Kdr	kinase insert domain protein receptor	0.103
Ascl1	achaete-scute complex homolog 1 (Drosophila)	0.100
Ednrb	endothelin receptor type B	0.099
Tcfap2c	transcription factor AP-2, gamma	0.098
Fgf4	fibroblast growth factor 4	0.095
Bmp2	bone morphogenetic protein 2	0.092
Tcf15	transcription factor 15	0.090
Acvr1	activin A receptor, type 1	0.089
Lef1	lymphoid enhancer binding factor 1	0.089
Aplnr	apelin receptor	0.089
Tie1	tyrosine kinase with immunoglobulin-like and EGF-like domains 1	0.087
Dlx1	distal-less homeobox 1	0.087
Atoh7	atonal homolog 7 (Drosophila)	0.083
Rara	retinoic acid receptor, alpha	0.082
Mesp1	mesoderm posterior 1	0.081
Gdnf	glial cell line derived neurotrophic factor	0.081
Tbx2	T-box 2	0.080
Lmx1b	LIM homeobox transcription factor 1 beta	0.079
Hey1	hairy/enhancer-of-split related with YRPW motif 1	0.078
Bdnf	brain derived neurotrophic factor	0.078
Itgb1	integrin beta 1 (fibronectin receptor beta)	0.077
Notch3	Notch gene homolog 3 (Drosophila)	0.075
Zic3	zinc finger protein of the cerebellum 3	0.075
Ephb2	Eph receptor B2	0.073
Ebf3	early B-cell factor 3	0.073
Tbx15	T-box 15	0.072
Nanog	Nanog homeobox	0.071
Pitx1	paired-like homeodomain transcription factor 1	0.071
Pthlh	parathyroid hormone-like peptide	0.069
Cdh5	cadherin 5	0.067
Emcn	endomucin	0.067
Lrp6	low density lipoprotein receptor-related protein 6	0.062
Pou3f1	POU domain, class 3, transcription factor 1	0.062
Tbx3	T-box 3	0.062
Hoxa3	homeobox A3	0.061
Nos3	nitric oxide synthase 3, endothelial cell	0.061
Esam	endothelial cell-specific adhesion molecule	0.060
Clic3	chloride intracellular channel 3	0.058
Insm1	insulinoma-associated 1	0.057
Efna2	ephrin A2	0.056
Meox1	mesenchyme homeobox 1	0.054
Gas1	growth arrest specific 1	0.053
Hoxa2	homeobox A2	0.052
Myo6	myosin VI	0.051
Pou3f3	POU domain, class 3, transcription factor 3	0.051
Trp63	transformation related protein 63	0.051
Gata3	GATA binding protein 3	0.049
Bcl6b	B-cell CLL/lymphoma 6, member B	0.046
Erbb3	v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)	0.046
Flt1	FMS-like tyrosine kinase 1	0.045
Neurod1	neurogenic differentiation 1	0.045
Ldb2	LIM domain binding 2	0.045
Kitl	kit ligand	0.044
Sox3	SRY-box containing gene 3	0.043	Mouse
Hoxd13	homeobox D13	0.043
Lhx1	LIM homeobox protein 1	0.042
Rasip1	Ras interacting protein 1	0.041
Kcnk2	potassium channel, subfamily K, member 2	0.041
Hey2	hairy/enhancer-of-split related with YRPW motif 2	0.040
Bmper	BMP-binding endothelial regulator	0.039
Epha4	Eph receptor A4	0.039
En2	engrailed 2	0.039
Bmpr1a	bone morphogenetic protein receptor, type 1A	0.038
Dll1	delta-like 1 (Drosophila)	0.038
Tek	endothelial-specific receptor tyrosine kinase	0.038
Shank3	SH3/ankyrin domain gene 3	0.038
Twist2	twist homolog 2 (Drosophila)	0.036
Hoxa5	homeobox A5	0.036
Kit	kit oncogene	0.036
Smad6	MAD homolog 6 (Drosophila)	0.036
Apln	apelin	0.036
Lrp2	low density lipoprotein receptor-related protein 2	0.035
Pax9	paired box gene 9	0.035
Btbd17	BTB (POZ) domain containing 17	0.035
Six3	sine oculis-related homeobox 3 homolog (Drosophila)	0.035
Jag2	jagged 2	0.035
Nkx2-2	NK2 transcription factor related, locus 2 (Drosophila)	0.035
Bmp5	bone morphogenetic protein 5	0.034
Wnt3a	wingless-related MMTV integration site 3A	0.034
Npr3	natriuretic peptide receptor 3	0.032
Ushbp1	Usher syndrome 1C binding protein 1	0.032
Zic1	zinc finger protein of the cerebellum 1	0.032
Runx2	runt related transcription factor 2	0.031
Notch1	Notch gene homolog 1 (Drosophila)	0.031
Efs	embryonal Fyn-associated substrate	0.030
En1	engrailed 1	0.030
Emid2	EMI domain containing 2	0.030
Col11a1	collagen, type XI, alpha 1	0.029
Dlx2	distal-less homeobox 2	0.029
Nodal	nodal	0.029
Gata6	GATA binding protein 6	0.029
Lhx3	LIM homeobox protein 3	0.028
Nkx6-1	NK6 homeobox 1	0.028
Apc	adenomatosis polyposis coli	0.027
Odz4	odd Oz/ten-m homolog 4 (Drosophila)	0.027
Elavl2	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	0.027
Gja4	gap junction protein, alpha 4	0.027
Icam2	intercellular adhesion molecule 2	0.027
Pou3f4	POU domain, class 3, transcription factor 4	0.026
Adcy4	adenylate cyclase 4	0.026
Igdcc3	immunoglobulin superfamily, DCC subclass, member 3	0.026
Trp53	transformation related protein 53	0.025
Eng	endoglin	0.025
Sall1	sal-like 1 (Drosophila)	0.025
Mn1	meningioma 1	0.025
Ern2	endoplasmic reticulum (ER) to nucleus signalling 2	0.025
Wnt6	wingless-related MMTV integration site 6	0.025
Neurog2	neurogenin 2	0.024
Nkx2-3	NK2 transcription factor related, locus 3 (Drosophila)	0.024
Cbln1	cerebellin 1 precursor protein	0.024
Fgf18	fibroblast growth factor 18	0.023
Lhx5	LIM homeobox protein 5	0.023
Zic2	zinc finger protein of the cerebellum 2	0.023
Tbx10	T-box 10	0.023
Pkd1	polycystic kidney disease 1 homolog	0.022
Lhx6	LIM homeobox protein 6	0.022
Uncx	UNC homeobox	0.022
Apc2	adenomatosis polyposis coli 2	0.022
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	0.022
Hoxb13	homeobox B13	0.022
Lmx1a	LIM homeobox transcription factor 1 alpha	0.022
Rxra	retinoid X receptor alpha	0.021
Foxf2	forkhead box F2	0.021
Dlk1	delta-like 1 homolog (Drosophila)	0.020
Nr2f1	nuclear receptor subfamily 2, group F, member 1	0.020
Ly6h	lymphocyte antigen 6 complex, locus H	0.020
Gfra1	glial cell line derived neurotrophic factor family receptor alpha 1	0.020
Zfp503	zinc finger protein 503	0.020
Hhex	hematopoietically expressed homeobox	0.019
Erbb2	v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)	0.019
Dpysl4	dihydropyrimidinase-like 4	0.019
Tmeff2	transmembrane protein with EGF-like and two follistatin-like domains 2	0.019
Foxi3	forkhead box I3	0.019
Ece1	endothelin converting enzyme 1	0.019
Foxf1a	forkhead box F1a	0.019
Fjx1	four jointed box 1 (Drosophila)	0.019
Wnt5a	wingless-related MMTV integration site 5A	0.019
Fgd5	FYVE, RhoGEF and PH domain containing 5	0.019
Cdh4	cadherin 4	0.019
Gata2	GATA binding protein 2	0.018
Hoxc4	homeobox C4	0.018
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	0.018
Sema6a	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	0.018
Kcnq1	potassium voltage-gated channel, subfamily Q, member 1	0.018
Sfrp2	secreted frizzled-related protein 2	0.018
Fgf9	fibroblast growth factor 9	0.018
Nrtn	neurturin	0.018
Gli1	GLI-Kruppel family member GLI1	0.018
Dll4	delta-like 4 (Drosophila)	0.017
Sema5b	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	0.017
Mitf	microphthalmia-associated transcription factor	0.017
Gja1	gap junction protein, alpha 1	0.017
Arx	aristaless related homeobox	0.017
Bnc1	basonuclin 1	0.017
Efnb1	ephrin B1	0.017
Odz2	odd Oz/ten-m homolog 2 (Drosophila)	0.016
Gpc3	glypican 3	0.016
Crabp2	cellular retinoic acid binding protein II	0.016
Twist1	twist homolog 1 (Drosophila)	0.016
Phox2b	paired-like homeobox 2b	0.016
Foxd1	forkhead box D1	0.016
Psen1	presenilin 1	0.016
Kl	klotho	0.016
Nfib	nuclear factor I/B	0.016
Acan	aggrecan	0.016
Sfn	stratifin	0.016
Wnt4	wingless-related MMTV integration site 4	0.016
Pax1	paired box gene 1	0.016
Robo4	roundabout homolog 4 (Drosophila)	0.016
T	brachyury	0.016
Ikbkap	inhibitor of kappa light polypeptide enhancer in B-cells, kinase complex-associated protein	0.016
Obsl1	obscurin-like 1	0.015
Matn4	matrilin 4	0.015
Flt4	FMS-like tyrosine kinase 4	0.015
Ptk7	PTK7 protein tyrosine kinase 7	0.015
Bmp6	bone morphogenetic protein 6	0.015
Clec14a	C-type lectin domain family 14, member a	0.015
Nkx3-2	NK3 homeobox 2	0.015
Slc9a3r2	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	0.015
Rprm	reprimo, TP53 dependent G2 arrest mediator candidate	0.015
Zfp703	zinc finger protein 703	0.015
Irx3	Iroquois related homeobox 3 (Drosophila)	0.014
Pou4f2	POU domain, class 4, transcription factor 2	0.014
Olig2	oligodendrocyte transcription factor 2	0.014
Dkk1	dickkopf homolog 1 (Xenopus laevis)	0.014
Tnfrsf19	tumor necrosis factor receptor superfamily, member 19	0.014
Tgfbr2	transforming growth factor, beta receptor II	0.014
Phox2a	paired-like homeobox 2a	0.014
Id4	inhibitor of DNA binding 4	0.014
Msi1	Musashi homolog 1(Drosophila)	0.014
Barhl2	BarH-like 2 (Drosophila)	0.014
Etv4	ets variant gene 4 (E1A enhancer binding protein, E1AF)	0.014
Rhbdl3	rhomboid, veinlet-like 3 (Drosophila)	0.014
Lhx9	LIM homeobox protein 9	0.013
Myl2	myosin, light polypeptide 2, regulatory, cardiac, slow	0.013
Atp2b2	ATPase, Ca++ transporting, plasma membrane 2	0.013
Slitrk1	SLIT and NTRK-like family, member 1	0.013
Hoxb6	homeobox B6	0.013
Apba2	amyloid beta (A4) precursor protein-binding, family A, member 2	0.013
Col22a1	collagen, type XXII, alpha 1	0.013
Sez6l	seizure related 6 homolog like	0.013
Wnt3	wingless-related MMTV integration site 3	0.013
Sox7	SRY-box containing gene 7	0.013	Mouse
Fbn2	fibrillin 2	0.013
Dab1	disabled homolog 1 (Drosophila)	0.013
Apaf1	apoptotic peptidase activating factor 1	0.013
Cdon	cell adhesion molecule-related/down-regulated by oncogenes	0.013
Pecam1	platelet/endothelial cell adhesion molecule 1	0.013
Wnt7a	wingless-related MMTV integration site 7A	0.013
Tead4	TEA domain family member 4	0.013
Epas1	endothelial PAS domain protein 1	0.012
Cacng4	calcium channel, voltage-dependent, gamma subunit 4	0.012
Meis2	Meis homeobox 2	0.012
Foxd2	forkhead box D2	0.012
Arap3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	0.012
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	0.012
Dmrtb1	DMRT-like family B with proline-rich C-terminal, 1	0.012
Wnt7b	wingless-related MMTV integration site 7B	0.012
Krt17	keratin 17	0.012
Hoxa4	homeobox A4	0.012
Nrk	Nik related kinase	0.012
Kcne1l	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	0.012
Ina	internexin neuronal intermediate filament protein, alpha	0.012
Shisa9	shisa homolog 9 (Xenopus laevis)	0.012
Sobp	sine oculis-binding protein homolog (Drosophila)	0.012
Unc5c	unc-5 homolog C (C. elegans)	0.012
Acvrl1	activin A receptor, type II-like 1	0.012
Vstm2b	V-set and transmembrane domain containing 2B	0.012
Mmrn2	multimerin 2	0.012
Wnt11	wingless-related MMTV integration site 11	0.012
Ngfr	nerve growth factor receptor (TNFR superfamily, member 16)	0.012
Rgs5	regulator of G-protein signaling 5	0.012
Dlx6	distal-less homeobox 6	0.012
Col13a1	collagen, type XIII, alpha 1	0.012
Sema5a	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	0.012
Mark1	MAP/microtubule affinity-regulating kinase 1	0.012
Cdk5r1	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	0.012
Tcf7l1	transcription factor 7-like 1 (T-cell specific, HMG box)	0.012
Wt1	Wilms tumor 1 homolog	0.011
Gsbs	G substrate	0.011
Zfpm2	zinc finger protein, multitype 2	0.011
Hoxb3	homeobox B3	0.011
Cldn6	claudin 6	0.011
Nrg1	neuregulin 1	0.011
Hoxc8	homeobox C8	0.011
Sema3f	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	0.011
Edar	ectodysplasin-A receptor	0.011
Adrb1	adrenergic receptor, beta 1	0.011
Mmp17	matrix metallopeptidase 17	0.011
Fzd4	frizzled homolog 4 (Drosophila)	0.010
Pnoc	prepronociceptin	0.010
Irx5	Iroquois related homeobox 5 (Drosophila)	0.010
Apcdd1	adenomatosis polyposis coli down-regulated 1	0.010
Hoxd3	homeobox D3	0.010
Arhgef15	Rho guanine nucleotide exchange factor (GEF) 15	0.010
Sncg	synuclein, gamma	0.010
Crybb2	crystallin, beta B2	0.010
Smpd3	sphingomyelin phosphodiesterase 3, neutral	0.010
Cux2	cut-like homeobox 2	0.010
Nynrin	NYN domain and retroviral integrase containing	0.010
Tnni1	troponin I, skeletal, slow 1	0.010
Sox10	SRY-box containing gene 10	0.010	Mouse
St8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	0.010