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Process View

Danio rerio

11 genes annotated in zebrafish

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bone morphogenesis

GO:0060349

The process in which bones are generated and organized.

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In addition to gene-name show these genes:

Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "bone morphogenesis"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "bone morphogenesis" (in gray)

Name	Description	Probability	Func Analog Organism
foxi1	forkhead box I1	0.945	Zebrafish
jag1b	jagged 1b	0.814
gli2a	GLI-Kruppel family member GLI2a	0.802
bmp2b	bone morphogenetic protein 2b	0.764
col5a1	procollagen, type V, alpha 1	0.724
cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1	0.677
col1a2	collagen, type I, alpha 2	0.529
bmp4	bone morphogenetic protein 4	0.524	Mouse
notch1a	notch homolog 1a	0.498	Zebrafish
col2a1a	collagen type II, alpha-1a	0.458	Mouse Rat
pitx3	paired-like homeodomain transcription factor 3	0.271
col27a1a	collagen, type XXVII, alpha 1a	0.231	Mouse
her1	hairy-related 1	0.231
eya1	eyes absent homolog 1	0.215
bmper	BMP binding endothelial regulator	0.189
hoxa11a	homeo box A11a	0.180
twist2	twist2	0.171
postn	periostin, osteoblast specific factor	0.155
ntla	no tail a	0.155	Mouse
LOC100000500	sclerostin-like	0.150
mab21l2	mab-21-like 2	0.149
tbx5a	T-box 5a	0.145
gli3	GLI-Kruppel family member GLI3	0.142
sox9a	SRY-box containing gene 9a	0.139	Human Mouse
dlx4a	distal-less homeobox gene 4a	0.139
shha	sonic hedgehog a	0.120
dld	deltaD	0.118	Zebrafish
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.116
notch3	notch homolog 3	0.115	Zebrafish
prrx1a	paired related homeobox 1a	0.113
col1a1a	collagen, type I, alpha 1a	0.111	Mouse
edn1	endothelin 1	0.110
wu:fv91b12	wu:fv91b12	0.108
barx1	BarH-like homeobox 1	0.105
fgfr2	fibroblast growth factor receptor 2	0.098	Mouse
foxi3a	forkhead box I3a	0.098	Zebrafish
pax7a	paired box gene 7a	0.096
runx2b	runt-related transcription factor 2b	0.095	Mouse
tead3a	TEA domain family member 3 a	0.092
foxa2	forkhead box A2	0.089	Zebrafish
aldh1a3	aldehyde dehydrogenase 1 family, member A3	0.088
fgf3	fibroblast growth factor 3	0.087
ripply2	ripply2	0.086	Mouse
myod1	myogenic differentiation 1	0.084
hoxb3a	homeo box B3a	0.082
sox10	SRY-box containing gene 10	0.080
cdon	cell adhesion molecule-related/down-regulated by oncogenes	0.078
efnb2a	ephrin B2a	0.077
col5a2l	collagen, type V, alpha 2-like	0.076
mgp	matrix Gla protein	0.075
mafba	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	0.074
twist3	twist3	0.074
boc	brother of CDO	0.072
col9a3	collagen, type IX, alpha 3	0.070
fli1a	friend leukemia integration 1a	0.069
runx2a	runt-related transcription factor 2a	0.065	Mouse
tcf12	transcription factor 12	0.064
tbx16	T-box gene 16	0.061
bglap	bone gamma-carboxyglutamate (gla) protein	0.058
tp63	tumor protein p63	0.056
rbp4	retinol binding protein 4, plasma	0.056
epha4b	eph receptor A4b	0.056
lhx1b	LIM homeobox 1b	0.055
angptl2	angiopoietin-like 2	0.053
dact1	dapper homolog 1, antagonist of beta-catenin (xenopus)	0.053
twist1b	twist1b	0.052
dct	dopachrome tautomerase	0.051
fgf20a	fibroblast growth factor 20a	0.050
fgfrl1a	fibroblast growth factor receptor-like 1a	0.050
col12a1	collagen, type XII, alpha 1	0.050
gata3	GATA-binding protein 3	0.050
nog3	noggin 3	0.048
fgfrl1b	fibroblast growth factor receptor-like 1b	0.048
ctgf	connective tissue growth factor	0.046
hoxa2b	homeo box A2b	0.045
tbx24	T-box 24	0.044
foxi3b	forkhead box I3b	0.044	Zebrafish
dlx3b	distal-less homeobox gene 3b	0.043
hoxd9a	homeo box D9a	0.043
ghra	growth hormone receptor a	0.043	Rat
cart1	cartilage paired-class homeoprotein 1	0.042
ctsl1b	cathepsin L, 1 b	0.042
lama2	laminin, alpha 2	0.041
gdf6a	growth differentiation factor 6a	0.041
sesn1	sestrin 1	0.041
cmn	calymmin	0.041
bmp2a	bone morphogenetic protein 2a	0.041
raraa	retinoic acid receptor, alpha a	0.040	Mouse
dlx5a	distal-less homeobox gene 5a	0.040	Mouse
prdm1a	PR domain containing 1a, with ZNF domain	0.039
fgf10a	fibroblast growth factor 10a	0.039
zic2a	zic family member 2 (odd-paired homolog, Drosophila), a	0.037
grem2	gremlin 2, cysteine knot superfamily	0.037
tfe3b	transcription factor binding to IGHM enhancer 3b	0.036
matn4	matrilin 4	0.035
runx3	runt-related transcription factor 3	0.034
gpr126	G protein-coupled receptor 126	0.034
sparc	secreted acidic cysteine rich glycoprotein	0.033
mmp15b	matrix metallopeptidase 15b	0.033
hoxa13b	homeo box A13b	0.033
gli2b	GLI-Kruppel family member GLI2b	0.033
msxb	muscle segment homeobox B	0.032
bmp3	bone morphogenetic protein 3	0.032
hoxd10a	homeo box D10a	0.031
hmx1	H6 homeo box 1	0.030
tgfb2	transforming growth factor, beta 2	0.030	Rat
ripply1	ripply1	0.030	Mouse
gbx2	gastrulation brain homeo box 2	0.030
bhmt	betaine-homocysteine methyltransferase	0.030
hoxa10b	homeo box A10b	0.029
ptprsa	protein tyrosine phosphatase, receptor type, s, a	0.029
col10a1	collagen, type X, alpha 1	0.029
loxl3b	lysyl oxidase-like 3b	0.028
pcdh10b	protocadherin 10b	0.028
hmx4	H6 family homeobox 4	0.027
col9a2	procollagen, type IX, alpha 2	0.027
gli1	GLI-Kruppel family member 1	0.027
twist1a	twist1a	0.027
hoxb1a	homeo box B1a	0.026
col11a2	collagen type XI alpha-2	0.026
hoxd12a	homeo box D12a	0.026
cdx4	caudal type homeo box transcription factor 4	0.026
prdm5	PR domain containing 5	0.026
itga5	integrin, alpha 5 (fibronectin receptor, alpha polypeptide)	0.026
sema3h	semaphorin 3h	0.025
dcn	decorin	0.025
hoxb4a	homeo box B4a	0.025
dlx2a	distal-less homeobox gene 2a	0.025
sema3d	semaphorin 3d	0.025
lmo4a	LIM domain only 4a	0.024
spns2	spinster homolog 2 (Drosophila)	0.024
cftr	cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)	0.024
hoxd13a	homeo box D13a	0.024
dlx4b	distal-less homeobox gene 4b	0.024
fgf8b	fibroblast growth factor 8 b	0.024
col4a6	collagen, type IV, alpha 6	0.024
ptch1	patched 1	0.023
mmp2	matrix metalloproteinase 2	0.023
gbx1	gastrulation brain homeobox 1	0.023
ryr1b	ryanodine receptor 1b (skeletal)	0.022
smoc1	SPARC related modular calcium binding 1	0.022
hey1	hairy/enhancer-of-split related with YRPW motif 1	0.022
hoxa9b	homeo box A9b	0.022
pkd2	polycystic kidney disease 2	0.021
dnmt4	DNA (cytosine-5-)-methyltransferase 4	0.021
msxc	muscle segment homeobox C	0.021
wif1	wnt inhibitory factor 1	0.021
vwf	von Willebrand factor	0.021
hnf1ba	HNF1 homeobox Ba	0.020
hes6	hairy and enhancer of split 6 (Drosophila)	0.020
tnfsf10l	tumor necrosis factor (ligand) superfamily, member 10 like	0.020
grhl2b	grainyhead-like 2b (Drosophila)	0.020
hoxb5a	homeo box B5a	0.019
id3	inhibitor of DNA binding 3	0.019
zeb2a	zinc finger E-box binding homeobox 2a	0.019
tbx2b	T-box 2b	0.019
kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	0.018
fgfr3	fibroblast growth factor receptor 3	0.018	Mouse
neo1	neogenin 1	0.018
mef2ca	myocyte enhancer factor 2ca	0.018
prl	prolactin	0.017
msgn1	mesogenin 1	0.017
hand2	heart and neural crest derivatives expressed transcript 2	0.017
mmp14a	matrix metalloproteinase 14a (membrane-inserted)	0.017	Mouse
smoc2	secreted modular calcium binding protein 2	0.017
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.016
bmp7b	bone morphogenetic protein 7b	0.016
fgf24	fibroblast growth factor 24	0.016
smad7	MAD, mothers against decapentaplegic homolog 7 (Drosophila)	0.016
chd	chordin	0.016
tfap2c	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	0.016
fabp11a	fatty acid binding protein 11a	0.016
gyltl1b	glycosyltransferase-like 1b	0.015
ghrb	growth hormone receptor b	0.015	Rat
nfatc1	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	0.015
nkx3.2	NK3 homeobox 2	0.015
igfbp3	insulin-like growth factor binding protein 3	0.015
atoh7	atonal homolog 7	0.015
atp1a1a.4	ATPase, Na+/K+ transporting, alpha 1a.4 polypeptide	0.015
tshb	thyroid stimulating hormone, beta subunit	0.015
hoxb2a	homeo box B2a	0.014
mylz3	myosin, light polypeptide 3, skeletal muscle	0.014
wu:fj34h01	wu:fj34h01	0.014
sdc2	syndecan 2	0.014
tbx15	T-box 15	0.014
jag2	jagged 2	0.014	Zebrafish
barx2	BarH-like homeobox 2	0.014
fbp1b	fructose-1,6-bisphosphatase 1b	0.014
zgc:85838	zgc:85838	0.014
nipblb	novel protein similar to vertebrate Nipped-B homolog and nipped-b homolog b (Drosophila)	0.014
mecp2	methyl CpG binding protein 2	0.014
hoxa3a	homeo box A3a	0.013
foxc1a	forkhead box C1a	0.013
sp7	Sp7 transcription factor	0.013
foxa1	forkhead box A1	0.013	Zebrafish
ptprf	protein tyrosine phosphatase, receptor type, F	0.013
lef1	lymphocyte enhancer binding factor 1	0.013
egr2b	early growth response 2b	0.013
col11a1a	collagen, type XI, alpha 1a	0.013
foxa3	forkhead box A3	0.013	Zebrafish
nkx2.1a	NK2 homeobox 1a	0.013
zgc:111821	zgc:111821	0.013
wnt11	wingless-type MMTV integration site family, member 11	0.012
fgfr4	fibroblast growth factor receptor 4	0.012
hdac4	histone deacetylase 4	0.012
spry4	sprouty (Drosophila) homolog 4	0.012
col15a1b	collagen, type XV, alpha 1b	0.012
si:ch211-173b8.2	si:ch211-173b8.2	0.012
hoxa13a	homeo box A13a	0.012
rxrab	retinoid x receptor, alpha b	0.012
bcl2	B-cell leukemia/lymphoma 2	0.012
zgc:85866	zgc:85866	0.012
insm1b	insulinoma-associated 1b	0.012
bmp1a	bone morphogenetic protein 1a	0.012
sall1a	sal-like 1a (Drosophila)	0.012
mdka	midkine-related growth factor	0.012
slc5a5	solute carrier family 5 (sodium iodide symporter), member 5	0.012
fzd10	frizzled homolog 10	0.012
lhx5	LIM homeobox 5	0.012
plp1a	proteolipid protein 1a	0.012
jag1a	jagged 1a	0.012	Zebrafish
fgf23	fibroblast growth factor 23	0.011
dacha	dachshund a	0.011
gata2a	GATA-binding protein 2a	0.011
dmd	dystrophin	0.011
ccdc40	coiled-coil domain containing 40	0.011
alpi	alkaline phosphatase, intestinal	0.011
wu:fb80a07	wu:fb80a07	0.011
LOC100332039	ectonucleotide pyrophosphatase/phosphodiesterase family member 2-like	0.011
fgf20b	fibroblast growth factor 20b	0.011
nkx2.3	NK2 transcription factor related 3	0.011
pax6a	paired box gene 6a	0.011
fzd8a	frizzled homolog 8a	0.011
her7	hairy and enhancer of split related-7	0.011
rerea	arginine-glutamic acid dipeptide (RE) repeats a	0.010
hoxa4a	homeo box A4a	0.010
frem3	Fras1 related extracellular matrix 3	0.010
vegfaa	vascular endothelial growth factor Aa	0.010