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Danio rerio

13 genes annotated in zebrafish

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cartilage morphogenesis

GO:0060536

The process in which the anatomical structures of cartilage are generated and organized.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "cartilage morphogenesis"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "cartilage morphogenesis" (in gray)

Name	Description	Probability	Func Analog Organism
col5a1	procollagen, type V, alpha 1	0.996	Zebrafish
sox9a	SRY-box containing gene 9a	0.972
col1a1a	collagen, type I, alpha 1a	0.947	Zebrafish
furina	furin (paired basic amino acid cleaving enzyme) a	0.934
flh	floating head	0.880
nkx3.2	NK3 homeobox 2	0.857
prdm1a	PR domain containing 1a, with ZNF domain	0.847
col1a2	collagen, type I, alpha 2	0.832	Zebrafish
pcsk2	proprotein convertase subtilisin/kexin type 2	0.694	Zebrafish
barx1	BarH-like homeobox 1	0.670
dlx2a	distal-less homeobox gene 2a	0.659
wnt9a	wingless-type MMTV integration site family, member 9A	0.545
wnt9b	wingless-type MMTV integration site family, member 9B	0.538
runx2b	runt-related transcription factor 2b	0.486
tbx5a	T-box 5a	0.450	Zebrafish
tbx1	T-box 1	0.450
col11a1b	collagen type XI alpha-1b and collagen, type XI, alpha 1b	0.447
pcsk9	proprotein convertase subtilisin/kexin type 9	0.433
hapln1a	hyaluronan and proteoglycan link protein 1a	0.390
mib	mind bomb	0.383
pcsk1	proprotein convertase subtilisin/kexin type 1	0.353	Zebrafish
postn	periostin, osteoblast specific factor	0.349
pcsk7	proprotein convertase subtilisin/kexin type 7	0.283
wu:fv91b12	wu:fv91b12	0.275
edn1	endothelin 1	0.264
rargb	retinoic acid receptor, gamma b	0.263
satb2	SATB homeobox 2	0.251
loxl3b	lysyl oxidase-like 3b	0.231
chd	chordin	0.219
col11a2	collagen type XI alpha-2	0.208
pcsk5b	proprotein convertase subtilisin/kexin type 5b	0.208
epha4b	eph receptor A4b	0.202
fn1	fibronectin 1	0.201
gsc	goosecoid	0.196
ndr2	nodal-related 2	0.196
snai1a	snail homolog 1a (Drosophila)	0.191	Mouse
LOC100000500	sclerostin-like	0.181
ctgf	connective tissue growth factor	0.175
csnk1a1	casein kinase 1, alpha 1	0.155
sox10	SRY-box containing gene 10	0.153
pcsk5a	proprotein convertase subtilisin/kexin type 5a	0.135	Zebrafish
brpf1	bromodomain and PHD finger containing, 1	0.131
mef2ca	myocyte enhancer factor 2ca	0.131
dcn	decorin	0.130
tbx15	T-box 15	0.129	Zebrafish
jag1b	jagged 1b	0.129
zgc:158603	zgc:158603	0.119
eomesa	eomesodermin homolog a	0.114	Zebrafish
chrna1	cholinergic receptor, nicotinic, alpha polypeptide 1	0.102
xylt1	xylosyltransferase 1	0.101
tgfbi	transforming growth factor, beta-induced	0.100
ihha	Indian hedgehog homolog a	0.098
cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	0.093
hand2	heart and neural crest derivatives expressed transcript 2	0.091	Mouse
tcf21	transcription factor 21	0.089
cart1	cartilage paired-class homeoprotein 1	0.089
ptch1	patched 1	0.086
col5a2l	collagen, type V, alpha 2-like	0.086	Zebrafish
foxd3	forkhead box D3	0.085
sec24d	SEC24 family, member D (S. cerevisiae)	0.083
eve1	even-skipped-like1	0.083
spaw	southpaw	0.082
uxs1	UDP-glucuronic acid decarboxylase 1	0.082
furinb	furin (paired basic amino acid cleaving enzyme) b	0.081	Zebrafish
pou3f2	POU class 3 homeobox 2	0.079
col2a1a	collagen type II, alpha-1a	0.069	Zebrafish
sox3	SRY-box containing gene 3	0.069	Zebrafish
sox32	SRY-box containing gene 32	0.069	Zebrafish
lect1	leukocyte cell derived chemotaxin 1	0.068
plcb3	phospholipase C, beta 3 (phosphatidylinositol-specific)	0.067
mbtps1	membrane-bound transcription factor protease, site 1	0.065
pax7a	paired box gene 7a	0.063
dlx5a	distal-less homeobox gene 5a	0.063
wnt11	wingless-type MMTV integration site family, member 11	0.060
fli1a	friend leukemia integration 1a	0.058
aplnra	apelin receptor a	0.057
pkd2	polycystic kidney disease 2	0.056
tp73	tumor protein p73	0.056
tfap2a	transcription factor AP-2 alpha	0.056
mespb	mesoderm posterior b	0.055
hoxa13a	homeo box A13a	0.055
mkxa	mohawk homeobox a	0.053
tcf7	transcription factor 7 (T-cell specific, HMG-box)	0.053
ttna	titin a	0.050
hoxb4a	homeo box B4a	0.050
tbx16	T-box gene 16	0.049	Zebrafish
wnt7bb	wingless-type MMTV integration site family, member 7Bb	0.048
osr1	odd-skipped related 1 (Drosophila)	0.048
pax9	paired box gene 9	0.048
isl1	islet1	0.046
twist1b	twist1b	0.044
lfng	lunatic fringe homolog	0.044
bmp2b	bone morphogenetic protein 2b	0.044
dlx3b	distal-less homeobox gene 3b	0.043
tbx6	T-box gene 6	0.043	Zebrafish
tbx2b	T-box 2b	0.043	Zebrafish
hoxa13b	homeo box A13b	0.042
zic2a	zic family member 2 (odd-paired homolog, Drosophila), a	0.041
her7	hairy and enhancer of split related-7	0.041
cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1	0.041
emx1	empty spiracles homeobox 1	0.040
vangl2	vang-like 2 (van gogh, Drosophila)	0.040
wnt5b	wingless-type MMTV integration site family, member 5b	0.039
irx1b	iroquois homeobox protein 1, b	0.039
epb4.1l4	erythrocyte protein band 4.1-like 4	0.039
fgf17	fibroblast growth factor 17	0.038
sema3aa	semaphorin 3aa	0.036
nadl1.1	neural adhesion molecule L1.1	0.036
hmx1	H6 homeo box 1	0.035
hoxd10a	homeo box D10a	0.035
foxi1	forkhead box I1	0.035
flncb	filamin C, gamma b (actin binding protein 280)	0.035
si:ch211-235f6.2	si:ch211-235f6.2	0.034
s1pr2	sphingosine-1-phosphate receptor 2	0.034
dlx6a	distal-less homeobox gene 6a	0.033
tbx2a	T-box gene 2a	0.033	Zebrafish
msxc	muscle segment homeobox C	0.032
grem2	gremlin 2, cysteine knot superfamily	0.032
hoxd11a	homeo box D11a	0.031
wnt3a	wingless-type MMTV integration site family, member 3A	0.031
fam20b	family with sequence similarity 20, member B (H. sapiens)	0.030
hoxb2a	homeo box B2a	0.030
LOC556647	GDNF family receptor alpha-4-like	0.029
sox17	SRY-box containing gene 17	0.028	Zebrafish
mef2cb	myocyte enhancer factor 2cb	0.028	Zebrafish Mouse
spns2	spinster homolog 2 (Drosophila)	0.027
foxg1a	forkhead box G1a	0.027
nr2e1	nuclear receptor subfamily 2, group E, member 1	0.027
vdra	vitamin D receptor a	0.027
irx1a	iroquois homeobox protein 1, a	0.027
vcanb	versican b	0.027
lft1	lefty1	0.026
gli1	GLI-Kruppel family member 1	0.025
pikfyve	phosphoinositide kinase, FYVE finger containing	0.025
prrx1a	paired related homeobox 1a	0.025
matn4	matrilin 4	0.025
ehd2	EH-domain containing 2	0.025
pmp22a	peripheral myelin protein 22a	0.024
nadl1.2	neural adhesion molecule L1.2	0.024
runx3	runt-related transcription factor 3	0.024
rx3	retinal homeobox gene 3	0.024
otx1b	orthodenticle homolog 1b	0.024
neurod2	neurogenic differentiation 2	0.024
col12a1	collagen, type XII, alpha 1	0.023
stac3	SH3 and cysteine rich domain 3	0.023
zic1	zic family member 1 (odd-paired homolog, Drosophila)	0.023
disp1	dispatched homolog 1 (Drosophila)	0.023
barx2	BarH-like homeobox 2	0.022
ihhb	Indian hedgehog homolog b	0.021
klf2a	Kruppel-like factor 2a	0.021
sulf2l	sulfatase 2, like	0.021
map2k4a	mitogen-activated protein kinase kinase 4a	0.021
vent	ventral expressed homeobox	0.021
fzd5	frizzled homolog 5	0.020
mespa	mesoderm posterior a	0.020
wnt7aa	wingless-type MMTV integration site family, member 7Aa	0.020
eng2a	engrailed 2a	0.020
oep	one-eyed pinhead	0.019
hoxd13a	homeo box D13a	0.019
evx2	even-skipped homeobox 2	0.019
sparc	secreted acidic cysteine rich glycoprotein	0.019
vcana	versican a	0.019
jag2	jagged 2	0.019
dlb	deltaB	0.019
gbx2	gastrulation brain homeo box 2	0.019
hey1	hairy/enhancer-of-split related with YRPW motif 1	0.018
htt	huntingtin	0.018
fgf10a	fibroblast growth factor 10a	0.018
smyd1b	SET and MYND domain containing 1b	0.018
ctnnd2b	catenin (cadherin-associated protein), delta 2b	0.018
bmp1a	bone morphogenetic protein 1a	0.018
st14a	suppression of tumorigenicity 14 (colon carcinoma) a	0.018
bmp4	bone morphogenetic protein 4	0.018
pabpc4	poly(A) binding protein, cytoplasmic 4 (inducible form)	0.018
brd4	bromodomain containing 4	0.017
has3	hyaluronan synthase 3	0.017
msxb	muscle segment homeobox B	0.017
pdgfrl	platelet-derived growth factor receptor-like	0.017
pth2	parathyroid hormone 2	0.017
dcc	deleted in colorectal carcinoma	0.017
fbln1	fibulin 1	0.017
lzts2a	leucine zipper, putative tumor suppressor 2a	0.017
dlx4b	distal-less homeobox gene 4b	0.017
sox4b	SRY-box containing gene 4b	0.017
olfml3b	olfactomedin-like 3b	0.017
dbx1a	developing brain homeobox 1a	0.016
jam2b	junctional adhesion molecule 2b	0.016
twist3	twist3	0.016
hoxa11a	homeo box A11a	0.016
lhx1b	LIM homeobox 1b	0.016
extl3	exostoses (multiple)-like 3	0.016
fras1	Fraser syndrome 1	0.016
pmp22b	peripheral myelin protein 22b	0.016
dlx1a	distal-less homeobox gene 1a	0.016
sox1a	SRY-box containing gene 1a	0.016	Zebrafish
myod1	myogenic differentiation 1	0.016
lama2	laminin, alpha 2	0.016
admp	anti-dorsalizing morphogenic protein	0.016
ndr1	nodal-related 1	0.015
nkx2.1b	NK2 homeobox 1b	0.015
has2	hyaluronan synthase 2	0.015
irx5a	iroquois homeobox protein 5a	0.015
igf1	insulin-like growth factor 1	0.015
hoxb5b	homeo box B5b	0.015
fgf8a	fibroblast growth factor 8 a	0.015
prrx1b	paired related homeobox 1b	0.015
foxb1.2	forkhead box B1.2	0.015
klf2b	Kruppel-like factor 2b	0.015
hoxd12a	homeo box D12a	0.015
cyp11b2	cytochrome P450, family 11, subfamily B, polypeptide 2	0.015
hoxa9b	homeo box A9b	0.015
ntla	no tail a	0.015	Zebrafish
gpc4	glypican 4	0.015
unc45a	unc-45 homolog A (C. elegans)	0.015
vax2	ventral anterior homeobox 2	0.015
egr1	early growth response 1	0.015
chrna4	cholinergic receptor, nicotinic, alpha 4	0.015	Zebrafish
grhl2b	grainyhead-like 2b (Drosophila)	0.015
fgfr2	fibroblast growth factor receptor 2	0.015
lhx3	LIM homeobox 3	0.015
foxh1	forkhead box H1	0.014
chrm2a	cholinergic receptor, muscarinic 2a	0.014
sall4	sal-like 4 (Drosophila)	0.014
mitfa	microphthalmia-associated transcription factor a	0.014
ctsk	cathepsin K	0.014
hoxb6a	homeo box B6a	0.014
insm1a	insulinoma-associated 1a	0.014
zgc:64042	zgc:64042	0.014
slc35b2	solute carrier family 35, member B2	0.014
col1a1b	collagen, type I, alpha 1b	0.014	Zebrafish
rasgef1ba	RasGEF domain family, member 1Ba	0.014
frem3	Fras1 related extracellular matrix 3	0.014
sid4	secreted immunoglobulin domain 4	0.014
hoxa3a	homeo box A3a	0.014
arnt2	aryl hydrocarbon receptor nuclear translocator 2	0.014
col15a1b	collagen, type XV, alpha 1b	0.014
plod3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	0.014
ryr2b	ryanodine receptor 2b (cardiac)	0.013
zgc:111821	zgc:111821	0.013
pou5f1	POU domain, class 5, transcription factor 1	0.013
cdh1	cadherin 1, epithelial	0.013
twist1a	twist1a	0.013
nkx2.1a	NK2 homeobox 1a	0.013
ache	acetylcholinesterase	0.013
llgl2	lethal giant larvae homolog 2 (Drosophila)	0.013
cdx4	caudal type homeo box transcription factor 4	0.013
myf5	myogenic factor 5	0.013
irf6	interferon regulatory factor 6	0.013
tnnt3a	troponin T3a, skeletal, fast	0.013
bhlhe22	basic helix-loop-helix family, member e22	0.013
ptges	prostaglandin E synthase	0.013
pth1a	parathyroid hormone 1a	0.013
ldb2a	LIM-domain binding factor 2a	0.013
hoxa10b	homeo box A10b	0.012
cftr	cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)	0.012
mmp14a	matrix metalloproteinase 14a (membrane-inserted)	0.012
pcdh10a	protocadherin 10a	0.012
arx	aristaless related homeobox	0.012
ptch2	patched 2	0.012
foxe1	forkhead box E1 (thyroid transcription factor 2)	0.012
notch1a	notch homolog 1a	0.012
hoxd4a	homeo box D4a	0.012
col6a3	collagen, type VI, alpha 3	0.012
LOC100536439	parathyroid hormone-related protein-like	0.012
dharma	dharma	0.012
adipor1a	adiponectin receptor 1a	0.012
igf3	insulin-like growth factor 3	0.012
epyc	epiphycan	0.012
hoxa9a	homeo box A9a	0.012
tnfa	tumor necrosis factor a (TNF superfamily, member 2)	0.012
sp9	sp9 transcription factor	0.012
eif3hb	eukaryotic translation initiation factor 3, subunit H, b	0.012
gja3	gap junction protein, alpha 3	0.012
shha	sonic hedgehog a	0.011
scube2	signal peptide, CUB domain, EGF-like 2	0.011
crestin	crestin	0.011
hoxc6a	homeo box C6a	0.011
kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	0.011
slc6a3	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	0.011
fabp11a	fatty acid binding protein 11a	0.011
sec23a	Sec23 homolog A (S. cerevisiae)	0.011
mylz3	myosin, light polypeptide 3, skeletal muscle	0.011
s1pr3	sphingosine-1-phosphate receptor 3	0.011
pou3f3b	POU class 3 homeobox 3b	0.011
rp42-pen	rp42 homolog (pending) and rp42 homolog	0.011
tbx24	T-box 24	0.010	Zebrafish
notch1b	notch homolog 1b	0.010
hdac4	histone deacetylase 4	0.010
six3a	sine oculis homeobox homolog 3a	0.010
hoxb5a	homeo box B5a	0.010
foxn4	forkhead box N4	0.010
musk	muscle, skeletal, receptor tyrosine kinase	0.010