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Danio rerio

17 genes annotated in zebrafish

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embryonic epithelial tube formation

GO:0001838

The morphogenesis of an embryonic epithelium into a tube-shaped structure.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "embryonic epithelial tube formation"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "embryonic epithelial tube formation" (in gray)

Name	Description	Probability	Func Analog Organism
cdh2	cadherin 2, neuronal	0.515	Zebrafish
foxd3	forkhead box D3	0.482
gyltl1b	glycosyltransferase-like 1b	0.478
pou3f3b	POU class 3 homeobox 3b	0.404
nkd1	naked cuticle homolog 1 (Drosophila)	0.400
atoh1b	atonal homolog 1b	0.394	Zebrafish
wnt5b	wingless-type MMTV integration site family, member 5b	0.331	Mouse
etv5b	ets variant 5b	0.313
raraa	retinoic acid receptor, alpha a	0.301	Mouse
wnt4a	wingless-type MMTV integration site family, member 4a	0.299	Mouse
dla	deltaA	0.285
smad5	MAD homolog 5 (Drosophila)	0.282
gbx2	gastrulation brain homeo box 2	0.272
gdf6a	growth differentiation factor 6a	0.255
fgf3	fibroblast growth factor 3	0.215
tbx1	T-box 1	0.210
hoxb1b	homeo box B1b	0.191
otx2	orthodenticle homolog 2	0.191
kif17	kinesin family member 17	0.184
foxg1a	forkhead box G1a	0.180
otpb	orthopedia homolog b	0.173
fgf8b	fibroblast growth factor 8 b	0.169
six1b	sine oculis homeobox homolog 1b	0.161	Mouse
rx3	retinal homeobox gene 3	0.159
bmp2b	bone morphogenetic protein 2b	0.156
foxi1	forkhead box I1	0.155
sox19a	SRY-box containing gene 19a	0.151
sox9a	SRY-box containing gene 9a	0.150	Mouse
chd	chordin	0.139
ift88	intraflagellar transport 88 homolog	0.139
crb2a	crumbs homolog 2a	0.135
olig3	oligodendrocyte transcription factor 3	0.116
sema3aa	semaphorin 3aa	0.116
fzd10	frizzled homolog 10	0.115
pea3	ETS-domain transcription factor pea3	0.113
fgfr1b	fibroblast growth factor receptor 1b	0.113
wnt11	wingless-type MMTV integration site family, member 11	0.110
six1a	sine oculis homeobox homolog 1a	0.108	Mouse
olig2	oligodendrocyte lineage transcription factor 2	0.108
epb41l5	erythrocyte membrane protein band 4.1 like 5	0.107
zic5	zic family member 5 (odd-paired homolog, Drosophila)	0.106
zic3	zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila)	0.104	Zebrafish
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.103
hhip	hedgehog interacting protein	0.102
sox3	SRY-box containing gene 3	0.099
foxj1a	forkhead box J1a	0.097
fzd7b	frizzled homolog 7b	0.096
pkd2	polycystic kidney disease 2	0.096
gli1	GLI-Kruppel family member 1	0.095
guca1c	guanylate cyclase activator 1C	0.095
col2a1a	collagen type II, alpha-1a	0.091
smo	smoothened homolog (Drosophila)	0.090
six3b	sine oculis homeobox homolog 3b	0.088
cc2d2a	coiled-coil and C2 domain containing 2A	0.087
boc	brother of CDO	0.086
shha	sonic hedgehog a	0.083
six2a	sine oculis-related homeobox 2a	0.083
spry2	sprouty homolog 2	0.082
aldh1a2	aldehyde dehydrogenase 1 family, member A2	0.082
neurod	neurogenic differentiation	0.077	Zebrafish
notch1a	notch homolog 1a	0.077
spry1	sprouty homolog 1 (Drosophila)	0.075
hoxb3a	homeo box B3a	0.074
osr2	odd-skipped related 2 (Drosophila)	0.074
six3a	sine oculis homeobox homolog 3a	0.074
eng2b	engrailed 2b	0.074
lratb	lecithin retinol acyltransferase b (phosphatidylcholine--retinol O-acyltransferase b)	0.070
zic2a	zic family member 2 (odd-paired homolog, Drosophila), a	0.070
oc90	otoconin 90	0.070
fzd7a	frizzled homolog 7a	0.070
zic4	zic family member 4	0.068	Zebrafish
met	met proto-oncogene (hepatocyte growth factor receptor)	0.066
zic2b	zic family member 2 (odd-paired homolog, Drosophila) b	0.065	Zebrafish
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.063
mecom	MDS1 and EVI1 complex locus	0.060
egr2b	early growth response 2b	0.060
meis2.1	myeloid ecotropic viral integration site 2.1	0.060
mpp5a	membrane protein, palmitoylated 5a (MAGUK p55 subfamily member 5a)	0.060
odz4	odd Oz/ten-m homolog 4	0.060
fgfr4	fibroblast growth factor receptor 4	0.059
hapln1a	hyaluronan and proteoglycan link protein 1a	0.059
rfx2	regulatory factor X, 2 (influences HLA class II expression)	0.058
wnt3	wingless-type MMTV integration site family, member 3	0.054
crabp2b	cellular retinoic acid binding protein 2, b	0.054
prkci	protein kinase C, iota	0.053
zeb2a	zinc finger E-box binding homeobox 2a	0.052	Mouse
fsta	follistatin a	0.052
hoxd4a	homeo box D4a	0.051
rhoub	ras homolog gene family, member Ub	0.051
pcdh8	protocadherin 8	0.051	Zebrafish
tfap2a	transcription factor AP-2 alpha	0.049	Mouse
efnb3b	ephrin B3b	0.049
alcamb	activated leukocyte cell adhesion molecule b	0.048
fn1	fibronectin 1	0.047
gdnf	glial cell derived neurotrophic factor	0.046	Human Mouse Rat
myhz2	myosin, heavy polypeptide 2, fast muscle specific	0.046
ppp1r12a	protein phosphatase 1, regulatory (inhibitor) subunit 12A	0.045
hoxd3a	homeo box D3a	0.045
lfng	lunatic fringe homolog	0.044
isl1	islet1	0.044
twist1a	twist1a	0.043	Zebrafish
sox1a	SRY-box containing gene 1a	0.042
hoxb2a	homeo box B2a	0.042	Zebrafish
dctn1a	dynactin 1a	0.042
skia	nuclear oncoprotein skia	0.042	Mouse
znf703	zinc finger protein 703	0.039
dlx3b	distal-less homeobox gene 3b	0.039
cdon	cell adhesion molecule-related/down-regulated by oncogenes	0.039
hoxb5a	homeo box B5a	0.038
sall1a	sal-like 1a (Drosophila)	0.038
wnt3a	wingless-type MMTV integration site family, member 3A	0.038
tbx18	T-box 18	0.037
trpm7	transient receptor potential cation channel, subfamily M, member 7	0.037
gli2a	GLI-Kruppel family member GLI2a	0.037
zic1	zic family member 1 (odd-paired homolog, Drosophila)	0.037	Zebrafish
lef1	lymphocyte enhancer binding factor 1	0.037
her12	hairy-related 12	0.036	Mouse
shhb	sonic hedgehog b	0.036
irx1a	iroquois homeobox protein 1, a	0.035	Mouse
drgx	dorsal root ganglia homeobox	0.035
dld	deltaD	0.035
id2a	inhibitor of DNA binding 2, dominant negative helix-loop-helix protein, a	0.035
pvrl1a	poliovirus receptor-related 1a	0.034
eng1a	engrailed 1a	0.034
jag2	jagged 2	0.033
arl13b	ADP-ribosylation factor-like 13b	0.032
nkx6.2	NK6 transcription factor related, locus 2	0.032
cobl	cordon-bleu homolog (mouse)	0.032
mafba	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	0.032
tbx2b	T-box 2b	0.031
atoh1a	atonal homolog 1a	0.031	Zebrafish
hoxa2b	homeo box A2b	0.031	Zebrafish
meis3	myeloid ecotropic viral integration site 3	0.030
prdm1a	PR domain containing 1a, with ZNF domain	0.030
eng2a	engrailed 2a	0.030
lrrc6	leucine rich repeat containing 6	0.029
bmp2a	bone morphogenetic protein 2a	0.029
dbx1b	developing brain homeobox 1b	0.029
msxc	muscle segment homeobox C	0.029
epha4a	eph receptor A4a	0.029
meis2.2	myeloid ecotropic viral integration site 2.2	0.029
irx7	iroquois homeobox protein 7	0.029
ptk2.1	protein tyrosine kinase 2a	0.029
traf4a	tnf receptor-associated factor 4a	0.028
irx4b	iroquois homeobox protein 4b	0.028
six4a	sine oculis homeobox homolog 4a	0.028
pcdh19	protocadherin 19	0.028
spns2	spinster homolog 2 (Drosophila)	0.027
fzd3a	frizzled homolog 3a	0.027	Mouse
sox11a	SRY-box containing gene 11a	0.027
ncam1a	neural cell adhesion molecule 1a	0.027
mtp	microsomal triglyceride transfer protein	0.027
hmx3	homeo box (H6 family) 3	0.027
dync1h1	dynein, cytoplasmic 1, heavy chain 1	0.027
plxnb2a	plexin b2a	0.026	Mouse
ism1	isthmin 1	0.026
fzd8a	frizzled homolog 8a	0.026
myf5	myogenic factor 5	0.026
sox10	SRY-box containing gene 10	0.026
sox11b	SRY-box containing gene 11b	0.025
hoxb4a	homeo box B4a	0.025
sp5l	Sp5 transcription factor-like	0.025
sox2	SRY-box containing gene 2	0.024
prickle1a	prickle-like 1 (Drosophila) a	0.024	Human
gsc	goosecoid	0.024
smad1	MAD homolog 1 (Drosophila)	0.024
sulf1	sulfatase 1	0.024
her8a	hairy-related 8a	0.023
fgf8a	fibroblast growth factor 8 a	0.023
vangl2	vang-like 2 (van gogh, Drosophila)	0.023
rxrga	retinoid x receptor, gamma a	0.023
kdrl	kinase insert domain receptor like	0.023
nkx6.1	NK6 transcription factor related, locus 1 (Drosophila)	0.023
eya1	eyes absent homolog 1	0.022
jam3b	junctional adhesion molecule 3b	0.022
ephb4b	eph receptor B4b	0.022
st8sia6	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	0.022
pcdh10b	protocadherin 10b	0.022	Zebrafish
efnb1	ephrin B1	0.022
akt2	v-akt murine thymoma viral oncogene homolog 2	0.021	Zebrafish
ndr2	nodal-related 2	0.021
dlg2	discs, large (Drosophila) homolog 2	0.021
wnt1	wingless-type MMTV integration site family, member 1	0.021	Fly
hoxc1a	homeo box C1a	0.021	Zebrafish
pcdh18a	protocadherin 18a	0.021
crabp2a	cellular retinoic acid binding protein 2, a	0.021
s1pr2	sphingosine-1-phosphate receptor 2	0.021
rarab	retinoic acid receptor, alpha b	0.020	Mouse
dmrt2a	doublesex and mab-3 related transcription factor 2a	0.020
gata3	GATA-binding protein 3	0.020	Mouse
plekhg4	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	0.020
irx1b	iroquois homeobox protein 1, b	0.020
grhl2b	grainyhead-like 2b (Drosophila)	0.020	Mouse
nkx3.2	NK3 homeobox 2	0.020
gpr98	G protein-coupled receptor 98	0.019
sall4	sal-like 4 (Drosophila)	0.019	Mouse
chst11	carbohydrate (chondroitin 4) sulfotransferase 11	0.019
wnt11r	wingless-type MMTV integration site family, member 11, related	0.019
zeb2b	zinc finger E-box binding homeobox 2b	0.019
evx2	even-skipped homeobox 2	0.019
im:7156396	im:7156396	0.018
sulf2l	sulfatase 2, like	0.018
efnb2a	ephrin B2a	0.018
nr2e1	nuclear receptor subfamily 2, group E, member 1	0.018
evx1	even-skipped homeobox 1	0.018
hgfa	hepatocyte growth factor a	0.018
efna5b	ephrin A5b	0.018
bmper	BMP binding endothelial regulator	0.018
chd7	chromodomain helicase DNA binding protein 7	0.018
neo1	neogenin 1	0.018
mef2d	myocyte enhancer factor 2d	0.018
cxadr	coxsackie virus and adenovirus receptor	0.017
barhl1.2	BarH-like 1.2	0.017
mapk1	mitogen-activated protein kinase 1	0.017
jag1b	jagged 1b	0.017
fgf4	fibroblast growth factor 4	0.017
im:7137453	im:7137453	0.017
ascl1b	achaete-scute complex-like 1b (Drosophila)	0.017
hoxa3a	homeo box A3a	0.017
cntn1a	contactin 1a	0.017
zgc:110298	zgc:110298	0.017
ryk	receptor-like tyrosine kinase	0.017
dzip1	DAZ interacting protein 1	0.017
mecp2	methyl CpG binding protein 2	0.017
zgc:91860	zgc:91860	0.017
vasp	vasodilator-stimulated phosphoprotein	0.016	Mouse
LOC565697	polycystin-1-like	0.016
flh	floating head	0.016
ctnnb1	catenin (cadherin-associated protein), beta 1	0.016	Mouse
gpc4	glypican 4	0.016
sulf2	sulfatase 2	0.016
celsr2	cadherin, EGF LAG seven-pass G-type receptor 2 and cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	0.016
zeb1	zinc finger E-box binding homeobox 1	0.016
dip2c	DIP2 disco-interacting protein 2 homolog C (Drosophila)	0.016
glula	glutamate-ammonia ligase (glutamine synthase) a	0.016
ighz2	immunoglobulin heavy constant zeta2	0.016
mib	mind bomb	0.016
terfa	telomeric repeat binding factor a	0.016
nav3	neuron navigator 3	0.016
hpca	hippocalcin	0.016
sept6	septin 6	0.016
wls	wntless homolog (Drosophila)	0.016
disp1	dispatched homolog 1 (Drosophila)	0.016
eya4	eyes absent homolog 4 (Drosophila)	0.015
tnfrsfa	tumor necrosis factor receptor superfamily, member a	0.015
meox1	mesenchyme homeobox 1	0.015
cdh1	cadherin 1, epithelial	0.015
msxe	muscle segment homeobox E	0.015
cdh6	cadherin 6	0.015
sp5	Sp5 transcription factor	0.015
sf3b1	splicing factor 3b, subunit 1	0.015
phox2b	paired-like homeobox 2b	0.015
dlg1	discs, large (Drosophila) homolog 1	0.015
slc3a2	solute carrier family 3, member 2	0.015
lmx1b.2	LIM homeobox transcription factor 1, beta 2	0.015
col4a6	collagen, type IV, alpha 6	0.015
dnmt6	DNA (cytosine-5-)-methyltransferase 6	0.015
rx2	retinal homeobox gene 2	0.015
six4b	sine oculis homeobox homolog 4b	0.014	Mouse
plxnb2b	plexin b2b	0.014	Mouse
irx3a	iroquois homeobox protein 3a	0.014	Mouse
lims1	LIM and senescent cell antigen-like domains 1	0.014
notch3	notch homolog 3	0.014
loxl2b	lysyl oxidase-like 2b	0.014
si:dkeyp-7c9.1	si:dkeyp-7c9.1	0.014
hoxa11a	homeo box A11a	0.014
tcf7l1b	transcription factor 7-like 1b (T-cell specific, HMG-box)	0.014
pard6gb	par-6 partitioning defective 6 homolog gamma B (C. elegans)	0.014
dnmt8	DNA (cytosine-5-)-methyltransferase 8	0.014
hoxa13b	homeo box A13b	0.014
foxp2	forkhead box P2	0.014
snai1b	snail homolog 1b (Drosophila)	0.013
axin2	axin 2 (conductin, axil)	0.013
pdzrn3	PDZ domain containing RING finger 3 and PDZ domain containing ring finger 3	0.013
cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	0.013
sb:cb81	sb:cb81	0.013
cldn5a	claudin 5a	0.013
pvalb7	parvalbumin 7	0.013
tbr1b	T-box, brain, 1b	0.013
ncs1a	neuronal calcium sensor 1a	0.013
cart1	cartilage paired-class homeoprotein 1	0.013
hoxb5b	homeo box B5b	0.013
zgc:112180	zgc:112180	0.013
acvr1l	activin A receptor, type I like	0.013
im:7165141	im:7165141	0.013
rfng	radical fringe homolog (Drosophila)	0.013
usp9	ubiquitin specific peptidase 9	0.013
dusp6	dual specificity phosphatase 6	0.013
si:ch211-232m7.1	si:ch211-232m7.1	0.012
b4galt4	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4	0.012
lzts2a	leucine zipper, putative tumor suppressor 2a	0.012
ptpra	protein tyrosine phosphatase, receptor type, A	0.012
jam2a	junctional adhesion molecule 2a	0.012
ptf1a	pancreas specific transcription factor, 1a	0.012	Zebrafish
hoxc6a	homeo box C6a	0.012
foxa2	forkhead box A2	0.012
ext1a	exostoses (multiple) 1a	0.012
jam2b	junctional adhesion molecule 2b	0.012
si:dkey-8l13.4	si:dkey-8l13.4	0.012
tnfsf10l3	tumor necrosis factor (ligand) superfamily, member 10 like 3	0.012
ntla	no tail a	0.012	Mouse
zgc:112211	zgc:112211	0.012
si:ch211-272f3.4	si:ch211-272f3.4	0.012
hoxc4a	homeo box C4a	0.012
zgc:195154	zgc:195154	0.012
foxi3b	forkhead box I3b	0.012
il11ra	interleukin 11 receptor, alpha	0.012
dlx4a	distal-less homeobox gene 4a	0.012
fzd9b	frizzled homolog 9b	0.012
mitfa	microphthalmia-associated transcription factor a	0.012
zgc:77051	zgc:77051	0.011
celf1	cugbp, Elav-like family member 1	0.011
hoxa4a	homeo box A4a	0.011
hey1	hairy/enhancer-of-split related with YRPW motif 1	0.011
gata2a	GATA-binding protein 2a	0.011
ptch1	patched 1	0.011	Mouse
si:ch211-57k11.10	si:ch211-57k11.10	0.011
zgc:86759	zgc:86759	0.011
zgc:171495	zgc:171495	0.011
smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.011
wif1	wnt inhibitory factor 1	0.011
pbx4	pre-B-cell leukemia transcription factor 4	0.011
rasl11b	RAS-like, family 11, member B	0.011
ptch2	patched 2	0.011
foxi3a	forkhead box I3a	0.011
snip1	Smad nuclear interacting protein	0.011
fgf24	fibroblast growth factor 24	0.011
wu:fb76c12	wu:fb76c12	0.011
hs6st2	heparan sulfate 6-O-sulfotransferase 2	0.011
LOC100003514	protein kinase C alpha type-like	0.011
neurod6a	neurogenic differentiation 6a	0.011
LOC100332245	cordon-bleu protein-like 1-like	0.011
tfeb	transcription factor EB	0.011
zgc:101598	zgc:101598	0.011
her9	hairy-related 9	0.011
zgc:66100	zgc:66100	0.011
slit3	slit (Drosophila) homolog 3	0.011
ankrd6	ankyrin repeat domain 6	0.011
bmpr1aa	bone morphogenetic protein receptor, type 1aa	0.010
chm	choroideremia	0.010
tshz1	teashirt family zinc finger 1	0.010
pax6a	paired box gene 6a	0.010
esyt3	extended synaptotagmin-like protein 3	0.010
pnx	posterior neuron-specific homeobox	0.010
mab21l2	mab-21-like 2	0.010
esrrga	estrogen-related receptor gamma a	0.010
scrib	scribbled homolog (Drosophila)	0.010
tbx24	T-box 24	0.010