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Danio rerio

12 genes annotated in zebrafish

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mesodermal cell migration

GO:0008078

The orderly movement of mesodermal cells from one site to another.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "mesodermal cell migration"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "mesodermal cell migration" (in gray)

Name	Description	Probability	Func Analog Organism
wnt5b	wingless-type MMTV integration site family, member 5b	0.988	Zebrafish
wnt4a	wingless-type MMTV integration site family, member 4a	0.979	Zebrafish
myf5	myogenic factor 5	0.843
fbn2b	fibrillin 2b	0.816
fn1	fibronectin 1	0.796
fgfr1a	fibroblast growth factor receptor 1a	0.790	Fly
ptch1	patched 1	0.675
mapk1	mitogen-activated protein kinase 1	0.607
wnt1	wingless-type MMTV integration site family, member 1	0.475	Zebrafish
dag1	dystroglycan 1	0.448
gli1	GLI-Kruppel family member 1	0.443
ptch2	patched 2	0.443
wnt8b	wingless-type MMTV integration site family, member 8b	0.430	Zebrafish
lamb1a	laminin, beta 1a	0.389
wnt3	wingless-type MMTV integration site family, member 3	0.368	Zebrafish
pcdh8	protocadherin 8	0.366
wnt10a	wingless-type MMTV integration site family, member 10a	0.347	Zebrafish
vcana	versican a	0.330
ephb4b	eph receptor B4b	0.323
bmp2a	bone morphogenetic protein 2a	0.313
dharma	dharma	0.293
bmp4	bone morphogenetic protein 4	0.291
sema3aa	semaphorin 3aa	0.279
mespb	mesoderm posterior b	0.271	Mouse
crim1	cysteine rich transmembrane BMP regulator 1 (chordin like)	0.257
fgfr2	fibroblast growth factor receptor 2	0.254	Fly
sox4b	SRY-box containing gene 4b	0.251
sulf1	sulfatase 1	0.245
wnt11	wingless-type MMTV integration site family, member 11	0.244
wnt2bb	wingless-type MMTV integration site family, member 2Bb	0.240	Zebrafish
wnt11r	wingless-type MMTV integration site family, member 11, related	0.225	Zebrafish
map2k4a	mitogen-activated protein kinase kinase 4a	0.208
nrg2a	neuregulin 2a	0.205
s1pr2	sphingosine-1-phosphate receptor 2	0.203
fgf17	fibroblast growth factor 17	0.181
lama5	laminin, alpha 5	0.179
tbx18	T-box 18	0.178
lamc1	laminin, gamma 1	0.177
oep	one-eyed pinhead	0.173
crb2a	crumbs homolog 2a	0.164
slit1a	slit homolog 1a (Drosophila)	0.163	Fly
lef1	lymphocyte enhancer binding factor 1	0.161
fgfr3	fibroblast growth factor receptor 3	0.152	Fly
nadl1.1	neural adhesion molecule L1.1	0.150
wnt3a	wingless-type MMTV integration site family, member 3A	0.147	Zebrafish
fzd7a	frizzled homolog 7a	0.145
tbx1	T-box 1	0.143
hmx4	H6 family homeobox 4	0.142
pxn	paxillin	0.138
gro1	groucho 1	0.136
slit3	slit (Drosophila) homolog 3	0.136	Fly
hfe2	hemochromatosis type 2	0.135
tll1	tolloid-like 1	0.133
lpp	LIM domain containing preferred translocation partner in lipoma	0.127
mapk3	mitogen-activated protein kinase 3	0.123
notch3	notch homolog 3	0.123
wnt9b	wingless-type MMTV integration site family, member 9B	0.121	Zebrafish
tgfbi	transforming growth factor, beta-induced	0.120
alcamb	activated leukocyte cell adhesion molecule b	0.118
sulf2l	sulfatase 2, like	0.118
wls	wntless homolog (Drosophila)	0.116
fgf3	fibroblast growth factor 3	0.112
snai1b	snail homolog 1b (Drosophila)	0.109
boc	brother of CDO	0.108
gyltl1b	glycosyltransferase-like 1b	0.108
alpi	alkaline phosphatase, intestinal	0.107
robo2	roundabout homolog 2	0.101
msxc	muscle segment homeobox C	0.097
dkk1b	dickkopf 1b	0.097
zbtb4	zinc finger and BTB domain containing 4	0.097
epha4a	eph receptor A4a	0.096
wnt7ba	wingless-type MMTV integration site family, member 7Ba	0.095	Zebrafish
atoh1a	atonal homolog 1a	0.092
sall4	sal-like 4 (Drosophila)	0.091
etv2	ets variant gene 2	0.087
kdrl	kinase insert domain receptor like	0.086
ripply1	ripply1	0.084
hmx1	H6 homeo box 1	0.082
spry4	sprouty (Drosophila) homolog 4	0.081
grk7a	G-protein-coupled receptor kinase 7a	0.080
bmp1a	bone morphogenetic protein 1a	0.080
fbln1	fibulin 1	0.078
pax7a	paired box gene 7a	0.075
ntrk3b	neurotrophic tyrosine kinase, receptor, type 3b	0.075
chst11	carbohydrate (chondroitin 4) sulfotransferase 11	0.074
wif1	wnt inhibitory factor 1	0.072
hsp47	heat shock protein 47	0.072
eng1a	engrailed 1a	0.069
wnt16	wingless-type MMTV integration site family, member 16	0.069
myod1	myogenic differentiation 1	0.068
emx3	empty spiracles homeobox 3	0.067
skia	nuclear oncoprotein skia	0.066
evx1	even-skipped homeobox 1	0.065
ripply2	ripply2	0.063
mapk6	mitogen-activated protein kinase 6	0.063
zgc:110298	zgc:110298	0.062
mmp2	matrix metalloproteinase 2	0.062
slit2	slit (Drosophila) homolog 2	0.061	Fly
her5	hairy-related 5	0.059
grem2	gremlin 2, cysteine knot superfamily	0.058
csnk1da	casein kinase 1, delta a	0.057
ldlrap1a	low density lipoprotein receptor adaptor protein 1a	0.057
rx1	retinal homeobox gene 1	0.056
pacsin3	protein kinase C and casein kinase substrate in neurons 3	0.055
frem3	Fras1 related extracellular matrix 3	0.054
her1	hairy-related 1	0.054
twist1a	twist1a	0.053
tbx24	T-box 24	0.052
mapk12	mitogen-activated protein kinase 12	0.052
ntn2	netrin 2	0.049
wnt2	wingless-type MMTV integration site family member 2	0.048	Zebrafish
tpm4	tropomyosin 4	0.048
efnb2a	ephrin B2a	0.047
myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	0.047
vsx1	visual system homeobox 1 homolog, chx10-like	0.046
LOC797832	similar to signal peptide, CUB domain, EGF-like 1	0.046
plcg1	phospholipase C, gamma 1	0.046
lratb	lecithin retinol acyltransferase b (phosphatidylcholine--retinol O-acyltransferase b)	0.045
tnnt2a	troponin T2a, cardiac	0.045
foxp2	forkhead box P2	0.045
wu:fv91b12	wu:fv91b12	0.044
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.044
spon2a	spondin 2a, extracellular matrix protein	0.042
mapk4	mitogen-activated protein kinase 4	0.042
hspg2	heparan sulfate proteoglycan 2	0.042
cdkn1c	cyclin-dependent kinase inhibitor 1C (p57, Kip2)	0.041
mrc1a	mannose receptor, C type 1a	0.041
rbpms2	RNA binding protein with multiple splicing 2	0.041
ntrk1	neurotrophic tyrosine kinase, receptor, type 1	0.041
cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	0.041
rassf8b	Ras association (RalGDS/AF-6) domain family 8b	0.040
mapk15	mitogen-activated protein kinase 15	0.040
gata4	GATA-binding protein 4	0.040
lrp2	low density lipoprotein-related protein 2	0.039
LOC100003514	protein kinase C alpha type-like	0.038
LOC100007758	novel protein similar to vertebrate SLIT and NTRK-like family, member 3 (SLITRK3)	0.038
ntn1b	netrin 1b	0.037	Worm
etv1	ets variant gene 1	0.037
oc90	otoconin 90	0.037
foxn4	forkhead box N4	0.036
aplnrb	apelin receptor b	0.036
irx4b	iroquois homeobox protein 4b	0.036
msxd	muscle segment homeobox D	0.035
zdhhc8b	zinc finger, DHHC-type containing 8b	0.035
ephb4a	eph receptor B4a	0.035
guca1c	guanylate cyclase activator 1C	0.035
cyp26c1	cytochrome P450, family 26, subfamily C, polypeptide 1	0.035
sb:cb560	sb:cb560	0.034
brd4	bromodomain containing 4	0.034
ncor2	nuclear receptor co-repressor 2	0.034
fgf6a	fibroblast growth factor 6a	0.033
smad3b	MAD, mothers against decapentaplegic homolog 3b (Drosophila)	0.033
il17rd	interleukin 17 receptor D	0.033
lama4	laminin, alpha 4	0.033
mxi1	max interacting protein	0.032
pou3f3b	POU class 3 homeobox 3b	0.032
zgc:63947	zgc:63947	0.032
tbx5a	T-box 5a	0.032
thy1	Thy-1 cell surface antigen	0.032
btg1	B-cell translocation gene 1	0.032
hoxa13b	homeo box A13b	0.032
acp5b	acid phosphatase 5b, tartrate resistant	0.031
slit1b	slit homolog 1b (Drosophila)	0.031	Fly
svil	supervillin	0.031
fgfr4	fibroblast growth factor receptor 4	0.031	Fly
sox11b	SRY-box containing gene 11b	0.031
bmp2b	bone morphogenetic protein 2b	0.031
si:ch211-272f3.4	si:ch211-272f3.4	0.031
podxl	podocalyxin-like	0.031
anxa5b	annexin A5b	0.030
myog	myogenin	0.030
mespa	mesoderm posterior a	0.030	Mouse
fign	fidgetin	0.030
col4a3	collagen, type IV, alpha 3	0.029
nkd1	naked cuticle homolog 1 (Drosophila)	0.029
pea3	ETS-domain transcription factor pea3	0.029
emx2	empty spiracles homeobox 2	0.029
ephb3a	eph receptor B3a	0.029
sox1a	SRY-box containing gene 1a	0.029
antxr1	anthrax toxin receptor 1	0.029
itga5	integrin, alpha 5 (fibronectin receptor, alpha polypeptide)	0.029
nrarpa	notch-regulated ankyrin repeat protein a	0.029
aplnra	apelin receptor a	0.029	Zebrafish
veph	ventricular zone expressed PH domain protein	0.029
grem1a	gremlin 1 homolog a, cysteine knot superfamily (Xenopus laevis)	0.028
mpz	myelin protein zero	0.028
has2	hyaluronan synthase 2	0.028
cdh1	cadherin 1, epithelial	0.028
tbx20	T-box 20	0.028
spaw	southpaw	0.027
rfng	radical fringe homolog (Drosophila)	0.027
xirp1	xin actin-binding repeat containing 1	0.027
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.027
prkcea	protein kinase C, epsilon a	0.027
rcn3	reticulocalbin 3, EF-hand calcium binding domain	0.026
glceb	glucuronyl C5-epimerase b	0.026
col4a2	collagen, type IV, alpha 2	0.026
sfrp1a	secreted frizzled-related protein 1a	0.026
ctnnd2a	catenin (cadherin-associated protein), delta 2a	0.025
mpp5a	membrane protein, palmitoylated 5a (MAGUK p55 subfamily member 5a)	0.025
tpm2	tropomyosin 2 (beta)	0.025
si:ch211-197h24.9	si:ch211-197h24.9	0.025
igf1ra	insulin-like growth factor 1a receptor	0.025
pax7b	paired box gene 7b	0.025
ptrfb	polymerase I and transcript release factor b	0.025
stac3	SH3 and cysteine rich domain 3	0.024
slc6a8	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	0.024
kdelr3	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	0.024
itga3b	integrin, alpha 3b	0.024	Worm
col8a1a	collagen, type VIII, alpha 1a	0.024
pde10a	phosphodiesterase 10A	0.024
lmbr1l	limb region 1 like	0.023
lhx2b	LIM homeobox 2b	0.023
fbln4	fibulin 4	0.023
tbx16	T-box gene 16	0.023
loxl2b	lysyl oxidase-like 2b	0.023
cebp1	CCAAT/enhancer binding protein (C/EBP) 1	0.023
fbxl14b	F-box and leucine-rich repeat protein 14b	0.023
odz4	odd Oz/ten-m homolog 4	0.023
olfm2	olfactomedin 2	0.023
atoh7	atonal homolog 7	0.023
smyhc1	slow myosin heavy chain 1	0.023
ptgs1	prostaglandin-endoperoxide synthase 1	0.022
zgc:114181	zgc:114181	0.022
gbx2	gastrulation brain homeo box 2	0.022
foxa	forkhead box A sequence	0.022
ccdc80	coiled-coil domain containing 80	0.022
prkcd	protein kinase C, delta	0.022	Zebrafish
pitx3	paired-like homeodomain transcription factor 3	0.021
mmp14a	matrix metalloproteinase 14a (membrane-inserted)	0.021
fam49ba	family with sequence similarity 49, member Ba	0.021
zgc:91860	zgc:91860	0.021
tpm1	tropomyosin 1 (alpha)	0.021
vasp	vasodilator-stimulated phosphoprotein	0.020
col9a1	collagen, type IX, alpha 1	0.020
bcam	basal cell adhesion molecule (Lutheran blood group)	0.020
mapk7	mitogen-activated protein kinase 7	0.019
phgdh	phosphoglycerate dehydrogenase	0.019
LOC569128	hypothetical protein LOC569128	0.019
nrp1a	neuropilin 1a	0.019
unc5c	unc-5 homolog C (C. elegans)	0.019
ilk	integrin linked kinase	0.019
csrp1a	cysteine and glycine-rich protein 1a	0.019
acvr1b	activin A receptor, type IB	0.019
mesp2	mesoderm posterior 2 homolog (mouse)	0.019
atm	ataxia telangiectasia mutated	0.019
wnt7bb	wingless-type MMTV integration site family, member 7Bb	0.019
tcea3	transcription elongation factor A (SII), 3	0.019
pdlim7	PDZ and LIM domain 7	0.019
sim1a	single-minded homolog 1a (Drosophila)	0.018
col27a1a	collagen, type XXVII, alpha 1a	0.018
pcdh10a	protocadherin 10a	0.018
wnt5a	wingless-type MMTV integration site family, member 5a	0.018	Zebrafish
zgc:101723	zgc:101723	0.018
snai1a	snail homolog 1a (Drosophila)	0.018
tnfsf10l	tumor necrosis factor (ligand) superfamily, member 10 like	0.018
sb:cb166	sb:cb166	0.018
rhpn2	rhophilin, Rho GTPase binding protein 2	0.018
clic4	chloride intracellular channel 4	0.018
flt4	fms-related tyrosine kinase 4	0.018
hgfa	hepatocyte growth factor a	0.018
kidins220b	kinase D-interacting substrate of 220b	0.018
ihhb	Indian hedgehog homolog b	0.018
tyr	tyrosinase	0.018
robo3	roundabout homolog 3	0.017
fam43b	family with sequence similarity 43, member B	0.017
lipg	lipase, endothelial	0.017
wnt7aa	wingless-type MMTV integration site family, member 7Aa	0.017	Zebrafish
notch1a	notch homolog 1a	0.017
epb41l5	erythrocyte membrane protein band 4.1 like 5	0.017
foxn1	forkhead box N1	0.017
sp2	sp2 transcription factor	0.017
mapk14a	mitogen-activated protein kinase 14a	0.016
smad3a	MAD homolog 3a (Drosophila)	0.016
robo1	roundabout homolog 1	0.016
im:7154036	im:7154036	0.016
sema3e	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	0.016
buc	bucky ball	0.016
map2k4b	mitogen-activated protein kinase kinase 4b	0.016
admp	anti-dorsalizing morphogenic protein	0.016
sfrp1b	secreted frizzled-related protein 1b	0.016
snai3	snail homolog 3	0.015	Zebrafish
tbr1b	T-box, brain, 1b	0.015
aldh1a3	aldehyde dehydrogenase 1 family, member A3	0.015
col7a1l	collagen type VII alpha 1-like	0.015
si:dkey-12o15.1	si:dkey-12o15.1	0.015
notum3	notum 3	0.015
slc17a7	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	0.015
gli2b	GLI-Kruppel family member GLI2b	0.015
ryr2b	ryanodine receptor 2b (cardiac)	0.015
LOC793701	growth arrest-specific protein 7-like	0.015
col17a1a	collagen, type XVII, alpha 1a	0.015
nrarpb	notch-regulated ankyrin repeat protein b	0.015
hlxb9lb	homeo box HB9 like b	0.015
dlx5a	distal-less homeobox gene 5a	0.015
col9a2	procollagen, type IX, alpha 2	0.014
scrib	scribbled homolog (Drosophila)	0.014
clybl	citrate lyase beta-like	0.014
msgn1	mesogenin 1	0.014
lhx1b	LIM homeobox 1b	0.014
zgc:153154	zgc:153154	0.014
tyrp1b	tyrosinase-related protein 1b	0.014
sardh	sarcosine dehydrogenase	0.014
spry2	sprouty homolog 2	0.014
unc5b	unc-5 homolog B (C. elegans)	0.014	Worm
six1b	sine oculis homeobox homolog 1b	0.014
sdc2	syndecan 2	0.014
efnb1	ephrin B1	0.014
gnb5b	guanine nucleotide binding protein (G protein), beta 5b	0.013
rbpja	recombination signal binding protein for immunoglobulin kappa J region a	0.013
hpca	hippocalcin	0.013
enpp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	0.013
rx2	retinal homeobox gene 2	0.013
dld	deltaD	0.013
pggt1b	protein geranylgeranyltransferase type I, beta subunit	0.013
sb:cb472	sb:cb472	0.013
hoxa1a	homeo box A1a	0.013
ift88	intraflagellar transport 88 homolog	0.013
si:dkey-273o13.1	si:dkey-273o13.1	0.013
lrrc4.1	leucine rich repeat containing 4.1	0.013
usp49	ubiquitin specific peptidase 49	0.013
irgq1	immunity-related GTPase family, q1	0.013
gsna	gelsolin a	0.013
LOC100004296	novel protein similar to murine T brachyury (T)	0.013
rgmb	RGM domain family, member B	0.013
dnajc5ga	DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a	0.013
dusp6	dual specificity phosphatase 6	0.013
sb:cb215	sb:cb215	0.013
ptprk	protein tyrosine phosphatase, receptor type, K	0.013
syt9a	synaptotagmin IXa	0.013
si:dkeyp-15g12.1	si:dkeyp-15g12.1	0.013
oprd1b	opioid receptor, delta 1b	0.013
tnc	tenascin C	0.012
cx43.4	connexin 43.4	0.012
mef2d	myocyte enhancer factor 2d	0.012
eif2ak3	eukaryotic translation initiation factor 2-alpha kinase 3	0.012
asb8	ankyrin repeat and SOCS box-containing 8	0.012
rogdi	rogdi homolog (Drosophila)	0.012
fzd9b	frizzled homolog 9b	0.012
b4galt4	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4	0.012
pax3a	paired box gene 3a	0.012
zgc:112084	zgc:112084	0.012
chp2	calcineurin B homologous protein 2	0.012
sumo3a	SMT3 suppressor of mif two 3 homolog 3a	0.012
stox1	storkhead box 1	0.012
prrx1a	paired related homeobox 1a	0.012
igf1rb	insulin-like growth factor 1b receptor	0.012
tgfb3	transforming growth factor, beta 3	0.012
ptprf	protein tyrosine phosphatase, receptor type, F	0.012
gata5	GATA-binding protein 5	0.012
dlc	deltaC	0.012
fhl2b	four and a half LIM domains 2b	0.012
tpp1	tripeptidyl peptidase I	0.012
cyp2aa4	cytochrome P450, family 2, subfamily AA, polypeptide 4	0.012
igfbp3	insulin-like growth factor binding protein 3	0.012
smyd1b	SET and MYND domain containing 1b	0.012
nog2	noggin 2	0.012
dmrta2	doublesex and mab-3 related transcription factor like family A2	0.011
gpc4	glypican 4	0.011
efna5a	ephrin A5a	0.011
oprm1	opioid receptor, mu 1	0.011
pard6gb	par-6 partitioning defective 6 homolog gamma B (C. elegans)	0.011
hoxa13a	homeo box A13a	0.011
thop1	thimet oligopeptidase 1	0.011
foxd5	forkhead box D5	0.011
spns2	spinster homolog 2 (Drosophila)	0.011
fstl1b	follistatin-like 1b	0.011
rel	v-rel reticuloendotheliosis viral oncogene homolog	0.011
nog1	noggin 1	0.011
adora2b	adenosine A2b receptor	0.011
ptpn21	protein tyrosine phosphatase, non-receptor type 21	0.011
tsc1a	tuberous sclerosis 1a	0.011
col1a1a	collagen, type I, alpha 1a	0.011
apobec2a	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2a	0.011
pth2r	parathyroid hormone 2 receptor	0.011
zgc:77395	zgc:77395	0.011
pgm1	phosphoglucomutase 1	0.011
crb3b	crumbs homolog 3b	0.010
nrg2b	neuregulin 2b	0.010
abca1b	ATP-binding cassette, sub-family A (ABC1), member 1B	0.010
vwa2	von Willebrand factor A domain containing 2	0.010
lmna	lamin A	0.010
si:dkey-236e20.2	si:dkey-236e20.2	0.010
col2a1a	collagen type II, alpha-1a	0.010
ttna	titin a	0.010
lrrfip2	leucine rich repeat (in FLII) interacting protein 2	0.010
kctd12.1	potassium channel tetramerisation domain containing 12.1	0.010
dpysl5b	dihydropyrimidinase-like 5b	0.010
rbfox1l	RNA binding protein, fox-1 homolog (C. elegans) 1-like	0.010
pdx1	pancreatic and duodenal homeobox 1	0.010
fadd	Fas (tnfrsf6)-associated via death domain	0.010
sim2	single-minded homolog 2 (Drosophila)	0.010
gro2	groucho 2	0.010
lamb2	laminin, beta 2 (laminin S)	0.010
frem1a	Fras1 related extracellular matrix 1a	0.010
pax6b	paired box gene 6b	0.010
gnsb	glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID), b	0.010
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.010
inhbaa	inhibin, beta Aa	0.010
cdon	cell adhesion molecule-related/down-regulated by oncogenes	0.010
anxa4	annexin A4	0.010
ism1	isthmin 1	0.010
gtpbp1l	GTP binding protein 1, like	0.010
pik3r2	phosphoinositide-3-kinase, regulatory subunit, polypeptide 2	0.010