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Danio rerio

15 genes annotated in zebrafish

embryonic neurocranium morphogenesis

The process in which the anatomical structures of the neurocranium are generated and organized during the embryonic phase. The neurocranium is the portion of the vertebrate skull surrounding the brain.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "embryonic neurocranium morphogenesis"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "embryonic neurocranium morphogenesis" (in gray)

Name	Description	Probability	Func Analog Organism
tbx1	T-box 1	0.891
wnt2bb	wingless-type MMTV integration site family, member 2Bb	0.853	Zebrafish
wnt9a	wingless-type MMTV integration site family, member 9A	0.764
wnt4a	wingless-type MMTV integration site family, member 4a	0.673	Zebrafish
osr1	odd-skipped related 1 (Drosophila)	0.601
wnt10b	wingless-type MMTV integration site family, member 10b	0.599	Zebrafish
tgfb3	transforming growth factor, beta 3	0.546	Rat
tcf7	transcription factor 7 (T-cell specific, HMG-box)	0.540
tbx5a	T-box 5a	0.535
col2a1a	collagen type II, alpha-1a	0.514
flh	floating head	0.492
gata6	GATA-binding protein 6	0.449
bmp4	bone morphogenetic protein 4	0.449
bmp2a	bone morphogenetic protein 2a	0.430
dharma	dharma	0.417
osr2	odd-skipped related 2 (Drosophila)	0.406
ptch2	patched 2	0.391
hand2	heart and neural crest derivatives expressed transcript 2	0.328
wnt2	wingless-type MMTV integration site family member 2	0.311	Zebrafish
vent	ventral expressed homeobox	0.311
rerea	arginine-glutamic acid dipeptide (RE) repeats a	0.302
lama5	laminin, alpha 5	0.285
col8a1a	collagen, type VIII, alpha 1a	0.237
dld	deltaD	0.207
ndr2	nodal-related 2	0.205
wnt1	wingless-type MMTV integration site family, member 1	0.188	Zebrafish
tal1	T-cell acute lymphocytic leukemia 1	0.185
col11a2	collagen type XI alpha-2	0.185
fn1	fibronectin 1	0.180
fgf4	fibroblast growth factor 4	0.172
hnf1ba	HNF1 homeobox Ba	0.172
wnt3	wingless-type MMTV integration site family, member 3	0.167	Zebrafish
fstl1a	follistatin-like 1a	0.152
tbx22	T-box 22	0.148
ptch1	patched 1	0.144
wnt5b	wingless-type MMTV integration site family, member 5b	0.138	Zebrafish
wnt10a	wingless-type MMTV integration site family, member 10a	0.137	Zebrafish
kdrl	kinase insert domain receptor like	0.135
rspo3	R-spondin 3 homolog (Xenopus laevis)	0.133
sox32	SRY-box containing gene 32	0.133
wnt3a	wingless-type MMTV integration site family, member 3A	0.130	Zebrafish
gli1	GLI-Kruppel family member 1	0.125
fgf8a	fibroblast growth factor 8 a	0.123
plod3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	0.123
fgf10a	fibroblast growth factor 10a	0.122
pwp2h	PWP2 periodic tryptophan protein homolog (yeast)	0.120
bmp1a	bone morphogenetic protein 1a	0.118
tbx24	T-box 24	0.117
her5	hairy-related 5	0.110
csnk1a1	casein kinase 1, alpha 1	0.107
satb2	SATB homeobox 2	0.102
chd	chordin	0.099
pitx2	paired-like homeodomain transcription factor 2	0.094
mecom	MDS1 and EVI1 complex locus	0.090
nog3	noggin 3	0.090
wnt8b	wingless-type MMTV integration site family, member 8b	0.089	Zebrafish
fras1	Fraser syndrome 1	0.089
ippk	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	0.087
stat1b	signal transducer and activator of transcription 1b	0.085
ntn1b	netrin 1b	0.081
dkk1b	dickkopf 1b	0.079
barx1	BarH-like homeobox 1	0.076
alas2	aminolevulinate, delta-, synthetase 2	0.076
wnt9b	wingless-type MMTV integration site family, member 9B	0.076	Zebrafish
bmp2b	bone morphogenetic protein 2b	0.076
gle1	GLE1 RNA export mediator homolog (yeast)	0.075
smad9	MAD homolog 9 (Drosophila)	0.074
irf11	interferon regulatory factor 11	0.072
fgf17	fibroblast growth factor 17	0.072
myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	0.070
ptenb	phosphatase and tensin homolog B (mutated in multiple advanced cancers 1)	0.070
wnt7aa	wingless-type MMTV integration site family, member 7Aa	0.069	Zebrafish
grem2	gremlin 2, cysteine knot superfamily	0.067
lratb	lecithin retinol acyltransferase b (phosphatidylcholine--retinol O-acyltransferase b)	0.065
robo3	roundabout homolog 3	0.064
sec24d	SEC24 family, member D (S. cerevisiae)	0.064
lhx6	LIM homeobox 6	0.064
myod1	myogenic differentiation 1	0.063
lamb1a	laminin, beta 1a	0.063
zgc:158603	zgc:158603	0.063
xylt1	xylosyltransferase 1	0.062
prdm16	PR domain containing 16	0.060
tp53	tumor protein p53	0.060
foxi1	forkhead box I1	0.060
mib	mind bomb	0.057
pdlim7	PDZ and LIM domain 7	0.057
admp	anti-dorsalizing morphogenic protein	0.056
jag1b	jagged 1b	0.056
wnt7bb	wingless-type MMTV integration site family, member 7Bb	0.055
si:ch211-244b2.4	si:ch211-244b2.4	0.053
bmper	BMP binding endothelial regulator	0.053
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.053
hhex	hematopoietically expressed homeobox	0.053
ihha	Indian hedgehog homolog a	0.052	Zebrafish
nkx1.2la	NK1 transcription factor related 2-like,a	0.051
eve1	even-skipped-like1	0.051
aplnrb	apelin receptor b	0.051
cdh1	cadherin 1, epithelial	0.050
vcana	versican a	0.049
nkx2.3	NK2 transcription factor related 3	0.049
cdx4	caudal type homeo box transcription factor 4	0.048
wnt11r	wingless-type MMTV integration site family, member 11, related	0.047	Zebrafish
lft2	lefty2	0.047
foxp1b	forkhead box P1b	0.047
tnfsf10l3	tumor necrosis factor (ligand) superfamily, member 10 like 3	0.046
foxd3	forkhead box D3	0.044
foxa1	forkhead box A1	0.043
wnt16	wingless-type MMTV integration site family, member 16	0.043
ovol1	ovo-like 1 (Drosophila)	0.043
runx2b	runt-related transcription factor 2b	0.042
tbx18	T-box 18	0.042
map2k4a	mitogen-activated protein kinase kinase 4a	0.041
dlx2a	distal-less homeobox gene 2a	0.041
bon	bonnie and clyde	0.040
xirp1	xin actin-binding repeat containing 1	0.039
cyp26c1	cytochrome P450, family 26, subfamily C, polypeptide 1	0.038
si:ch211-173o4.2	si:ch211-173o4.2	0.037
dag1	dystroglycan 1	0.037
pdlim3b	PDZ and LIM domain 3b	0.036
npnt	nephronectin	0.036
fam20b	family with sequence similarity 20, member B (H. sapiens)	0.036
runx2a	runt-related transcription factor 2a	0.036
sim1a	single-minded homolog 1a (Drosophila)	0.035
LOC100002342	carboxypeptidase A6-like	0.035
fgf24	fibroblast growth factor 24	0.035
lhx2b	LIM homeobox 2b	0.035
smad3b	MAD, mothers against decapentaplegic homolog 3b (Drosophila)	0.035
tbx5b	T-box 5b	0.035
smo	smoothened homolog (Drosophila)	0.035
zbtb4	zinc finger and BTB domain containing 4	0.034
itga3b	integrin, alpha 3b	0.034
msxa	muscle segment homeobox A	0.033
shhb	sonic hedgehog b	0.033
dkk3	dickkopf homolog 3 (Xenopus laevis)	0.033
tbx2a	T-box gene 2a	0.032
fbn2b	fibrillin 2b	0.032
mtp	microsomal triglyceride transfer protein	0.032
znfl2a	zinc finger-like gene 2a	0.032
gpc4	glypican 4	0.032
disp1	dispatched homolog 1 (Drosophila)	0.032
tob1a	transducer of ERBB2, 1a	0.032
sox17	SRY-box containing gene 17	0.031
oep	one-eyed pinhead	0.031
pcdh18b	protocadherin 18b	0.031
mef2cb	myocyte enhancer factor 2cb	0.031
fgf3	fibroblast growth factor 3	0.031
wnt11	wingless-type MMTV integration site family, member 11	0.030	Zebrafish
disc1	disrupted in schizophrenia 1	0.030
copa	coatomer protein complex, subunit alpha	0.030
tnnt2a	troponin T2a, cardiac	0.029
spns2	spinster homolog 2 (Drosophila)	0.029
twist3	twist3	0.029
ndr1	nodal-related 1	0.029
tgfb2	transforming growth factor, beta 2	0.028	Rat
lft1	lefty1	0.028
sp7	Sp7 transcription factor	0.028
angpt1	angiopoietin 1	0.028
pax9	paired box gene 9	0.027
map2k7	mitogen-activated protein kinase kinase 7	0.027
grem1a	gremlin 1 homolog a, cysteine knot superfamily (Xenopus laevis)	0.027
hoxa13b	homeo box A13b	0.027
hmgcrb	3-hydroxy-3-methylglutaryl-Coenzyme A reductase b	0.027
ephb4b	eph receptor B4b	0.027
cart1	cartilage paired-class homeoprotein 1	0.027
hbae1	hemoglobin alpha embryonic-1	0.027
LOC100334210	growth/differentiation factor 5-like	0.026
fgf20a	fibroblast growth factor 20a	0.026
tcf21	transcription factor 21	0.026
hoxd4a	homeo box D4a	0.026
pggt1b	protein geranylgeranyltransferase type I, beta subunit	0.026
barx2	BarH-like homeobox 2	0.026
isg15	ISG15 ubiquitin-like modifier	0.025
nkx3.2	NK3 homeobox 2	0.025
lhx1b	LIM homeobox 1b	0.025
runx3	runt-related transcription factor 3	0.025
gata4	GATA-binding protein 4	0.025	Zebrafish
lef1	lymphocyte enhancer binding factor 1	0.025
rel	v-rel reticuloendotheliosis viral oncogene homolog	0.025
fech	ferrochelatase	0.025
hoxa11a	homeo box A11a	0.025
gnl2	guanine nucleotide binding protein-like 2 (nucleolar)	0.025
pou5f1	POU domain, class 5, transcription factor 1	0.025
wnt4b	wingless-type MMTV integration site family, member 4b	0.025	Zebrafish
sec13	SEC13 homolog (S. cerevisiae)	0.024
prdm1a	PR domain containing 1a, with ZNF domain	0.024
ccna2	cyclin A2	0.024
szl	sizzled	0.024
sult1st4	sulfotransferase family 1, cytosolic sulfotransferase 4	0.024
tfr1a	transferrin receptor 1a	0.024
plcb3	phospholipase C, beta 3 (phosphatidylinositol-specific)	0.024
htra1a	HtrA serine peptidase 1a	0.024
sfrp1b	secreted frizzled-related protein 1b	0.024
cpox	coproporphyrinogen oxidase	0.024
arx	aristaless related homeobox	0.023
cfl2l	cofilin 2, like	0.023
extl3	exostoses (multiple)-like 3	0.023
msxe	muscle segment homeobox E	0.023
zfpm1	zinc finger protein, multitype 1	0.023
hmx1	H6 homeo box 1	0.023
ttna	titin a	0.023
spaw	southpaw	0.023
edn1	endothelin 1	0.023
has3	hyaluronan synthase 3	0.022
adcyap1a	adenylate cyclase activating polypeptide 1a	0.022
col10a1	collagen, type X, alpha 1	0.022
cpa2	carboxypeptidase A2 (pancreatic)	0.022
limk1	LIM domain kinase 1	0.022
sars	seryl-tRNA synthetase	0.022
csnk1da	casein kinase 1, delta a	0.022
foxa2	forkhead box A2	0.022
sec61al1	Sec61 alpha like 1	0.022
epb4.1l4	erythrocyte protein band 4.1-like 4	0.022
si:dkey-273o13.1	si:dkey-273o13.1	0.022
shha	sonic hedgehog a	0.021
limk2	LIM domain kinase 2	0.021
onecutl	one cut domain, family member, like	0.021
og9x	OG9 homeobox gene	0.021
stac3	SH3 and cysteine rich domain 3	0.021
itgav	integrin, alpha V	0.021
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.021
bcam	basal cell adhesion molecule (Lutheran blood group)	0.020
slc12a2	solute carrier family 12 (potassium/chloride transporters), member 2	0.020
frzb	frizzled-related protein	0.020
hoxc1a	homeo box C1a	0.020
psme1	proteasome activator subunit 1	0.020
sox4b	SRY-box containing gene 4b	0.020
mapk6	mitogen-activated protein kinase 6	0.020
mc5rb	melanocortin 5b receptor	0.020
hhip	hedgehog interacting protein	0.020
etv2	ets variant gene 2	0.020
tbx16	T-box gene 16	0.019
glcea	glucuronyl C5-epimerase a	0.019
frem2a	Fras1 related extracellular matrix protein 2a	0.019
gja3	gap junction protein, alpha 3	0.019
col27a1b	collagen, type XXVII, alpha 1b	0.019
glceb	glucuronyl C5-epimerase b	0.019
kop	askopos	0.019
ahctf1	AT hook containing transcription factor 1	0.019
cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	0.019
nkx2.5	NK2 transcription factor related 5	0.019
znf711	zinc finger protein 711	0.018
tm4sf4	transmembrane 4 L six family member 4	0.018
tll1	tolloid-like 1	0.018
ext2	exostoses (multiple) 2	0.018
myf5	myogenic factor 5	0.018
klf4a	Kruppel-like transcription factor 4a	0.017
msxd	muscle segment homeobox D	0.017
dlx4a	distal-less homeobox gene 4a	0.017
rest	RE1-silencing transcription factor	0.017
hey2	hairy/enhancer-of-split related with YRPW motif 2	0.017
rbpja	recombination signal binding protein for immunoglobulin kappa J region a	0.017
stat1a	signal transduction and activation of transcription 1a	0.017
dlx5a	distal-less homeobox gene 5a	0.017
arl4ab	ADP-ribosylation factor-like 4ab	0.017
fzd7a	frizzled homolog 7a	0.017
wls	wntless homolog (Drosophila)	0.017
sec31a	sec31 homolog A (S. cerevisiae)	0.017
mga	MAX gene associated	0.017
psme2	proteasome activator subunit 2	0.017
cyb5d1	cytochrome b5 domain containing 1	0.017
wwp2	WW domain containing E3 ubiquitin protein ligase 2	0.016
sulf1	sulfatase 1	0.016
nfybb	nuclear transcription factor Y, beta b	0.016
wnt2ba	wingless-type MMTV integration site family, member 2Ba	0.016	Zebrafish
LOC100000500	sclerostin-like	0.016
dmd	dystrophin	0.016
cenph	centromere protein H	0.016
smad5	MAD homolog 5 (Drosophila)	0.016
hgfa	hepatocyte growth factor a	0.016
csnk1db	casein kinase 1, delta b	0.016
optc	opticin	0.016
brd4	bromodomain containing 4	0.015
rargb	retinoic acid receptor, gamma b	0.015
unc45a	unc-45 homolog A (C. elegans)	0.015
wnt5a	wingless-type MMTV integration site family, member 5a	0.015	Zebrafish
mll	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)	0.015
eng2a	engrailed 2a	0.015
chrna2a	cholinergic receptor, nicotinic, alpha polypeptide 2a (neuronal)	0.015
gsc	goosecoid	0.015
cdkn1c	cyclin-dependent kinase inhibitor 1C (p57, Kip2)	0.015
otop1	otopetrin 1	0.015
veph	ventricular zone expressed PH domain protein	0.014
myh11a	myosin, heavy polypeptide 11, smooth muscle a	0.014
bty	bloodthirsty	0.014
lmo2	LIM domain only 2 (rhombotin-like 1)	0.014
cx39.9	connexin 39.9	0.014
frem1a	Fras1 related extracellular matrix 1a	0.014
fxyd1	FXYD domain containing ion transport regulator 1 (phospholemman)	0.014
apc	adenomatosis polyposis coli	0.014
map2k4b	mitogen-activated protein kinase kinase 4b	0.014
atp7a	ATPase, Cu++ transporting, alpha polypeptide	0.014
ryr2b	ryanodine receptor 2b (cardiac)	0.014
eif3hb	eukaryotic translation initiation factor 3, subunit H, b	0.014
bmp7b	bone morphogenetic protein 7b	0.014
hapln1a	hyaluronan and proteoglycan link protein 1a	0.014
pcdh8	protocadherin 8	0.014
dlx2b	distal-less homeobox gene 2b	0.013
efna2	ephrin A2	0.013
nkd2	naked cuticle homolog 2 and naked 2a	0.013
evx1	even-skipped homeobox 1	0.013
mxtx2	mix-type homeobox gene 2	0.013
tnnc1a	troponin C type 1a (slow)	0.013
pard6gb	par-6 partitioning defective 6 homolog gamma B (C. elegans)	0.013
mcm4	MCM4 minichromosome maintenance deficient 4, mitotin (S. cerevisiae)	0.013
sox21a	SRY-box containing gene 21a	0.013
zgc:92360	zgc:92360	0.013
hoxd11a	homeo box D11a	0.013
robo1	roundabout homolog 1	0.013
uxs1	UDP-glucuronic acid decarboxylase 1	0.013
oprd1a	opioid receptor, delta 1a	0.012
tph1b	tryptophan hydroxylase 1b	0.012
fabp2	fatty acid binding protein 2, intestinal	0.012
pax4	paired box 4	0.012
wnt7ba	wingless-type MMTV integration site family, member 7Ba	0.012	Zebrafish
hey1	hairy/enhancer-of-split related with YRPW motif 1	0.012
plagl2	pleiomorphic adenoma gene-like 2	0.012
sall4	sal-like 4 (Drosophila)	0.012
axin1	axin 1	0.012
arhgap12a	Rho GTPase activating protein 12a	0.012
gdf6b	growth differentiation factor 6b	0.012
foxa	forkhead box A sequence	0.012
si:dkey-236e20.2	si:dkey-236e20.2	0.012
hmx4	H6 family homeobox 4	0.012
bcl2	B-cell leukemia/lymphoma 2	0.012
pitx3	paired-like homeodomain transcription factor 3	0.012
fgf6a	fibroblast growth factor 6a	0.012
sufu	suppressor of fused homolog (Drosophila)	0.012
gata5	GATA-binding protein 5	0.012	Zebrafish
nog1	noggin 1	0.012
bmpr1aa	bone morphogenetic protein receptor, type 1aa	0.012
zgc:92590	zgc:92590	0.012
bhmt	betaine-homocysteine methyltransferase	0.012
pthlh	parathyroid hormone-like hormone	0.011
hbbe3	hemoglobin beta embryonic-3	0.011
oprm1	opioid receptor, mu 1	0.011
atp1a2a	ATPase, Na+/K+ transporting, alpha 2a polypeptide	0.011
twist1a	twist1a	0.011
rfx2	regulatory factor X, 2 (influences HLA class II expression)	0.011
ap2a1	adaptor-related protein complex 2, alpha 1 subunit	0.011
rxrab	retinoid x receptor, alpha b	0.011
lbx1a	ladybird homeobox 1a	0.011
fas	Fas (TNF receptor superfamily, member 6)	0.011
hoxb1b	homeo box B1b	0.011
sec23ip	SEC23 interacting protein	0.011
copb1	coatomer protein complex, subunit beta 1	0.011
pth2	parathyroid hormone 2	0.011
prdm5	PR domain containing 5	0.011
msxb	muscle segment homeobox B	0.011
chst11	carbohydrate (chondroitin 4) sulfotransferase 11	0.011
si:ch211-89f7.4	si:ch211-89f7.4	0.011
mapk14a	mitogen-activated protein kinase 14a	0.011
bmp7a	bone morphogenetic protein 7a	0.011
ntla	no tail a	0.011
dmrt3a	doublesex and mab-3 related transcription factor 3a	0.011
lzts2a	leucine zipper, putative tumor suppressor 2a	0.010
hsp90a.1	heat shock protein 90-alpha 1	0.010
eng1a	engrailed 1a	0.010
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.010
tp63	tumor protein p63	0.010
hoxd10a	homeo box D10a	0.010
cmlc1	cardiac myosin light chain-1	0.010
urod	uroporphyrinogen decarboxylase	0.010
dapp1	dual adaptor of phosphotyrosine and 3-phosphoinositides	0.010
qk	quaking	0.010
dlx4b	distal-less homeobox gene 4b	0.010
fes	feline sarcoma oncogene	0.010