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Danio rerio

16 genes annotated in zebrafish

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morphogenesis of a branching epithelium

GO:0061138

The process in which the anatomical structures of a branched epithelium are generated and organized.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "morphogenesis of a branching epithelium"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "morphogenesis of a branching epithelium" (in gray)

Name	Description	Probability	Func Analog Organism
shha	sonic hedgehog a	0.985	Mouse
notch3	notch homolog 3	0.876
kdrl	kinase insert domain receptor like	0.865
bmp4	bone morphogenetic protein 4	0.811	Human Mouse Rat
tbx1	T-box 1	0.764
wu:fv91b12	wu:fv91b12	0.690
traf4a	tnf receptor-associated factor 4a	0.626
fn1	fibronectin 1	0.622
fbn2b	fibrillin 2b	0.618
jag2	jagged 2	0.589	Zebrafish
foxd3	forkhead box D3	0.552
hnf1ba	HNF1 homeobox Ba	0.540	Mouse
foxa2	forkhead box A2	0.409	Mouse
hoxa13b	homeo box A13b	0.390	Mouse
wnt2bb	wingless-type MMTV integration site family, member 2Bb	0.376	Mouse
jag1b	jagged 1b	0.366	Zebrafish
osr2	odd-skipped related 2 (Drosophila)	0.361
boc	brother of CDO	0.350
aplnra	apelin receptor a	0.342
dll4	delta-like 4 (Drosophila)	0.332
pitx3	paired-like homeodomain transcription factor 3	0.313
cxcr4a	chemokine (C-X-C motif) receptor 4a	0.312	Mouse
wnt5b	wingless-type MMTV integration site family, member 5b	0.311	Mouse
cdh1	cadherin 1, epithelial	0.279	Mouse
wnt10a	wingless-type MMTV integration site family, member 10a	0.276
wnt11	wingless-type MMTV integration site family, member 11	0.254
cxcl12b	chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1)	0.242	Mouse
dlx2a	distal-less homeobox gene 2a	0.234
sulf1	sulfatase 1	0.233	Mouse
tp53	tumor protein p53	0.230
nrarpa	notch-regulated ankyrin repeat protein a	0.226
pax2a	paired box gene 2a	0.214	Mouse
gli1	GLI-Kruppel family member 1	0.206
mmp2	matrix metalloproteinase 2	0.202
ptgs1	prostaglandin-endoperoxide synthase 1	0.200
mecom	MDS1 and EVI1 complex locus	0.199
dld	deltaD	0.199	Zebrafish
myog	myogenin	0.195
hey1	hairy/enhancer-of-split related with YRPW motif 1	0.187
hs6st1a	heparan sulfate 6-O-sulfotransferase 1a	0.181	Zebrafish
fgfr2	fibroblast growth factor receptor 2	0.181	Mouse Fly
nrp1a	neuropilin 1a	0.175	Mouse
met	met proto-oncogene (hepatocyte growth factor receptor)	0.173
pea3	ETS-domain transcription factor pea3	0.171	Mouse
hey2	hairy/enhancer-of-split related with YRPW motif 2	0.170
wnt3a	wingless-type MMTV integration site family, member 3A	0.168
alcamb	activated leukocyte cell adhesion molecule b	0.157
dlc	deltaC	0.155	Zebrafish
nrp2a	neuropilin 2a	0.148
tcf7	transcription factor 7 (T-cell specific, HMG-box)	0.138
tll1	tolloid-like 1	0.134
hoxa9a	homeo box A9a	0.130
wls	wntless homolog (Drosophila)	0.128
sox2	SRY-box containing gene 2	0.127	Mouse
cdh2	cadherin 2, neuronal	0.126
pax7a	paired box gene 7a	0.121
twist1a	twist1a	0.121
sfrp1a	secreted frizzled-related protein 1a	0.119	Mouse
efnb2a	ephrin B2a	0.118
wnt3	wingless-type MMTV integration site family, member 3	0.111
hhex	hematopoietically expressed homeobox	0.104
plcg1	phospholipase C, gamma 1	0.102
eng1a	engrailed 1a	0.102
wt1a	wilms tumor 1a	0.096	Human Mouse
pdgfaa	platelet-derived growth factor alpha a	0.094	Mouse
elmo1	engulfment and cell motility 1 (ced-12 homolog, C. elegans)	0.093
sema3fa	semaphorin 3fa	0.091
hoxb3a	homeo box B3a	0.089
hoxa11a	homeo box A11a	0.088
slit3	slit (Drosophila) homolog 3	0.088
lmx1b.1	LIM homeobox transcription factor 1, beta 1	0.087
nkx2.2a	NK2 transcription factor related 2a	0.087
hoxd10a	homeo box D10a	0.081
edn1	endothelin 1	0.079
foxa3	forkhead box A3	0.077
evx2	even-skipped homeobox 2	0.077
cdx4	caudal type homeo box transcription factor 4	0.075
si:ch73-60e21.1	si:ch73-60e21.1	0.075
bmp2a	bone morphogenetic protein 2a	0.074	Mouse
igfbp3	insulin-like growth factor binding protein 3	0.073
wnt4a	wingless-type MMTV integration site family, member 4a	0.073	Mouse
smo	smoothened homolog (Drosophila)	0.071	Mouse
lef1	lymphocyte enhancer binding factor 1	0.070	Mouse
twist3	twist3	0.070
gli2a	GLI-Kruppel family member GLI2a	0.068	Mouse
runx3	runt-related transcription factor 3	0.067
grem2	gremlin 2, cysteine knot superfamily	0.066
dusp6	dual specificity phosphatase 6	0.061	Fly
scube2	signal peptide, CUB domain, EGF-like 2	0.061
sema3aa	semaphorin 3aa	0.057	Zebrafish Mouse
dag1	dystroglycan 1	0.055	Mouse
ywhae1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1	0.054
jam2b	junctional adhesion molecule 2b	0.053
hoxd12a	homeo box D12a	0.053
bmp2b	bone morphogenetic protein 2b	0.053	Mouse
she	Src homology 2 domain containing E	0.053
rargb	retinoic acid receptor, gamma b	0.052
acvrl1	activin A receptor type II-like 1	0.051
hoxd11a	homeo box D11a	0.051	Mouse
chd	chordin	0.051
notch1a	notch homolog 1a	0.050	Mouse
ptch2	patched 2	0.048
hoxb2a	homeo box B2a	0.047
flrt3	fibronectin leucine rich transmembrane 3	0.046
vegfaa	vascular endothelial growth factor Aa	0.045
twist1b	twist1b	0.045
im:7156396	im:7156396	0.045
ndr2	nodal-related 2	0.045
ihha	Indian hedgehog homolog a	0.044	Mouse
unc45a	unc-45 homolog A (C. elegans)	0.044
nrg2a	neuregulin 2a	0.044
srf	serum response factor	0.042	Mouse Fly
hoxc8a	homeo box C8a	0.042
tfec	transcription factor EC	0.042
nfatc1	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	0.042
atoh8	atonal homolog 8	0.042
hoxa9b	homeo box A9b	0.042
cxcr4b	chemokine (C-X-C motif), receptor 4b	0.041	Mouse
aplnrb	apelin receptor b	0.041
unc5b	unc-5 homolog B (C. elegans)	0.040
pax6b	paired box gene 6b	0.040
bmpr1aa	bone morphogenetic protein receptor, type 1aa	0.039
sox1a	SRY-box containing gene 1a	0.039
ctsba	cathepsin B, a	0.039
hapln3	hyaluronan and proteoglycan link protein 3	0.038
spint1a	serine peptidase inhibitor, Kunitz type 1 a	0.038	Mouse
etv2	ets variant gene 2	0.038
axin2	axin 2 (conductin, axil)	0.038
lamc1	laminin, gamma 1	0.038
smyhc1l	slow myosin heavy chain 1, like	0.038
notch1b	notch homolog 1b	0.038	Mouse
ntn2	netrin 2	0.038
plxnd1	plexin D1	0.037
mycn	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	0.037
myf5	myogenic factor 5	0.036
sox21a	SRY-box containing gene 21a	0.036
hoxc6a	homeo box C6a	0.036
frem3	Fras1 related extracellular matrix 3	0.034
hoxa13a	homeo box A13a	0.034	Mouse
angpt1	angiopoietin 1	0.034
sema3ab	semaphorin 3ab	0.034
hoxc9a	homeo box C9a	0.033
msxb	muscle segment homeobox B	0.033
hmx4	H6 family homeobox 4	0.032
hoxb8a	homeo box B8a	0.032
arap3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	0.032
col12a1	collagen, type XII, alpha 1	0.032
mpx	myeloid-specific peroxidase	0.032
dcc	deleted in colorectal carcinoma	0.032
tnnt3a	troponin T3a, skeletal, fast	0.032	Zebrafish
sim1a	single-minded homolog 1a (Drosophila)	0.032
six4b	sine oculis homeobox homolog 4b	0.031	Mouse
foxi1	forkhead box I1	0.031
wnt9b	wingless-type MMTV integration site family, member 9B	0.031	Mouse
ntn1a	netrin 1a	0.031
wt1b	wilms tumor 1b	0.030	Human Mouse
lhx2b	LIM homeobox 2b	0.030
hoxa10b	homeo box A10b	0.030
foxj1a	forkhead box J1a	0.029
tbx18	T-box 18	0.029
tlr21	toll-like receptor 21	0.029
hoxd3a	homeo box D3a	0.029
foxp2	forkhead box P2	0.028
gclm	glutamate-cysteine ligase, modifier subunit	0.027
fibin	fin bud initiation factor	0.027
spon2a	spondin 2a, extracellular matrix protein	0.027
ednra	endothelin receptor type A	0.027	Mouse
hs3st3b1b	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1b	0.026
sema3e	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	0.026	Mouse
wnt8b	wingless-type MMTV integration site family, member 8b	0.026
ism1	isthmin 1	0.025
nkx2.5	NK2 transcription factor related 5	0.025
col15a1b	collagen, type XV, alpha 1b	0.025
gyltl1b	glycosyltransferase-like 1b	0.024
myod1	myogenic differentiation 1	0.024
hoxb5b	homeo box B5b	0.024
fli1a	friend leukemia integration 1a	0.024
dbx1a	developing brain homeobox 1a	0.024
ascl1a	achaete-scute complex-like 1a (Drosophila)	0.024
angptl2	angiopoietin-like 2	0.024
hhip	hedgehog interacting protein	0.024	Mouse
fgf24	fibroblast growth factor 24	0.024
sars	seryl-tRNA synthetase	0.024
smad9	MAD homolog 9 (Drosophila)	0.024
ren	renin	0.023
si:ch211-235f6.2	si:ch211-235f6.2	0.023
sim2	single-minded homolog 2 (Drosophila)	0.023
hoxb5a	homeo box B5a	0.022
inka1a	induced in neural crest by AP2, 1a	0.022
hmx3	homeo box (H6 family) 3	0.022
prdm1a	PR domain containing 1a, with ZNF domain	0.022
nr2f5	nuclear receptor subfamily 2, group F, member 5	0.021
apoeb	apolipoprotein Eb	0.021
fgf3	fibroblast growth factor 3	0.021
igf1rb	insulin-like growth factor 1b receptor	0.021
zgc:56326	zgc:56326	0.021
ecscr	endothelial cell-specific chemotaxis regulator	0.021
ifnphi1	interferon phi 1	0.021
aldh1a2	aldehyde dehydrogenase 1 family, member A2	0.021
rx2	retinal homeobox gene 2	0.020
wnt7bb	wingless-type MMTV integration site family, member 7Bb	0.020
pvrl1b	poliovirus receptor-related 1b	0.020
emx3	empty spiracles homeobox 3	0.020
pou3f3a	POU class 3 homeobox 3a	0.020
nkx2.1a	NK2 homeobox 1a	0.020
ptch1	patched 1	0.020	Mouse
tnfsf10l	tumor necrosis factor (ligand) superfamily, member 10 like	0.020
hand2	heart and neural crest derivatives expressed transcript 2	0.020
hoxa2b	homeo box A2b	0.020
pnrc2	proline-rich nuclear receptor coactivator 2	0.020
prrx1b	paired related homeobox 1b	0.020
LOC100000687	signal peptide, CUB and EGF-like domain-containing protein 3-like	0.019
nphs2	nephrosis 2, idiopathic, steroid-resistant (podocin)	0.019
irx1a	iroquois homeobox protein 1, a	0.019
flncb	filamin C, gamma b (actin binding protein 280)	0.019
krml2.2	Kreisler (mouse) maf-related leucine zipper homolog 2.2	0.019
col8a1a	collagen, type VIII, alpha 1a	0.019
ntn1b	netrin 1b	0.019	Zebrafish
hdac4	histone deacetylase 4	0.019
fzd7b	frizzled homolog 7b	0.019
mafl	v-maf musculoaponeurotic fibrosarcoma (avian) oncogene family, protein L	0.019
tmem2	transmembrane protein 2	0.019
nkx2.3	NK2 transcription factor related 3	0.019
wif1	wnt inhibitory factor 1	0.018
hoxd9a	homeo box D9a	0.018
mib	mind bomb	0.018
csrnp1b	cysteine-serine-rich nuclear protein 1b	0.018
disc1	disrupted in schizophrenia 1	0.018
yap1	Yes-associated protein 1	0.018
foxa1	forkhead box A1	0.018	Mouse
foxi3b	forkhead box I3b	0.018
onecutl	one cut domain, family member, like	0.017
wnt11r	wingless-type MMTV integration site family, member 11, related	0.017
pcdh8	protocadherin 8	0.017
hlxb9lb	homeo box HB9 like b	0.017
vcanb	versican b	0.017
rfx2	regulatory factor X, 2 (influences HLA class II expression)	0.017
lratb	lecithin retinol acyltransferase b (phosphatidylcholine--retinol O-acyltransferase b)	0.017
ctsc	cathepsin C	0.017
cnih	cornichon homolog (Drosophila)	0.017
loxl2b	lysyl oxidase-like 2b	0.017
gja3	gap junction protein, alpha 3	0.017
lmo4a	LIM domain only 4a	0.016
klf2a	Kruppel-like factor 2a	0.016
rhoub	ras homolog gene family, member Ub	0.016
antxr1	anthrax toxin receptor 1	0.016
zgc:101606	zgc:101606	0.016
hs6st2	heparan sulfate 6-O-sulfotransferase 2	0.015
dact2	dapper homolog 2, antagonist of beta-catenin (xenopus)	0.015
foxc1a	forkhead box C1a	0.015
spaw	southpaw	0.015
thsd7a	thrombospondin, type I, domain containing 7A	0.015
tbx16	T-box gene 16	0.015
efnb1	ephrin B1	0.015
gdf6a	growth differentiation factor 6a	0.015
hapln1a	hyaluronan and proteoglycan link protein 1a	0.015
fgfr1a	fibroblast growth factor receptor 1a	0.015	Mouse Fly
tnnc2	troponin C type 2 (fast)	0.015
lft2	lefty2	0.015
cx43.4	connexin 43.4	0.015
tagln2	transgelin 2	0.015
flt1	fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)	0.014	Mouse
LOC100332039	ectonucleotide pyrophosphatase/phosphodiesterase family member 2-like	0.014
efna5a	ephrin A5a	0.014
fgf10a	fibroblast growth factor 10a	0.014	Mouse
klf4a	Kruppel-like transcription factor 4a	0.014
plce1	phospholipase C, epsilon 1	0.014
twist2	twist2	0.014
emx1	empty spiracles homeobox 1	0.014
oc90	otoconin 90	0.014
hoxc12b	homeo box C12b	0.014
limk2	LIM domain kinase 2	0.014
kdr	kinase insert domain receptor (a type III receptor tyrosine kinase)	0.014	Mouse
vhl	von Hippel-Lindau tumor suppressor	0.014
atp1a1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	0.013
fgf20b	fibroblast growth factor 20b	0.013
celsr1a	cadherin EGF LAG seven-pass G-type receptor 1a	0.013	Mouse
tnnt1	troponin T1, skeletal, slow	0.013	Zebrafish
nppa	natriuretic peptide precursor A	0.013
rorb	RAR-related orphan receptor B	0.013
mrc1a	mannose receptor, C type 1a	0.013
smyd3	SET and MYND domain containing 3	0.013
dsg2	desmoglein 2	0.013
hlx1	H2.0-like homeo box 1 (Drosophila)	0.013
postn	periostin, osteoblast specific factor	0.013
barx1	BarH-like homeobox 1	0.013
vegfc	vascular endothelial growth factor c	0.013
dopey1	dopey family member 1	0.012
tlr3	toll-like receptor 3	0.012
hs3st3b1a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1a	0.012
tead3a	TEA domain family member 3 a	0.012
hoxc4a	homeo box C4a	0.012
tbx20	T-box 20	0.012	Mouse
ctsl1a	cathepsin L, 1 a	0.012
ptrfb	polymerase I and transcript release factor b	0.012
cdh6	cadherin 6	0.012
foxj1b	forkhead box J1b	0.012
fgf8b	fibroblast growth factor 8 b	0.012	Mouse
lnx2b	ligand of numb-protein X 2b	0.012
crabp2b	cellular retinoic acid binding protein 2, b	0.012
epha2	eph receptor A2	0.012	Mouse
LOC565839	tumor necrosis factor alpha-induced protein 2-like	0.012
hoxd4a	homeo box D4a	0.012
fgfrl1a	fibroblast growth factor receptor-like 1a	0.012
nphs1l	nephrosis 1, congenital, Finnish type (nephrin)-like	0.012
npc2	Niemann-Pick disease, type C2	0.012
cmn	calymmin	0.012
ppp1r12a	protein phosphatase 1, regulatory (inhibitor) subunit 12A	0.012
msgn1	mesogenin 1	0.012
otpb	orthopedia homolog b	0.012
hoxb6b	homeo box B6b	0.012
dla	deltaA	0.011	Zebrafish
igf2b	insulin-like growth factor 2b	0.011
dkk2	dickkopf homolog 2 (Xenopus laevis)	0.011
fgfrl1b	fibroblast growth factor receptor-like 1b	0.011
zgc:77517	zgc:77517	0.011
csgalnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	0.011
flt4	fms-related tyrosine kinase 4	0.011
nipblb	novel protein similar to vertebrate Nipped-B homolog and nipped-b homolog b (Drosophila)	0.011
her3	hairy-related 3	0.011
hbbe1.1	hemoglobin beta embryonic-1.1	0.011
sox32	SRY-box containing gene 32	0.011
st8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	0.011
cnn2	calponin 2	0.011
evx1	even-skipped homeobox 1	0.011
pou3f3b	POU class 3 homeobox 3b	0.011
ptpn1	protein tyrosine phosphatase, non-receptor type 1	0.011
pth2r	parathyroid hormone 2 receptor	0.011
ptgs2a	prostaglandin-endoperoxide synthase 2a	0.011
wnt2ba	wingless-type MMTV integration site family, member 2Ba	0.011	Mouse
brd2a	bromodomain-containing 2a	0.011
calcrla	calcitonin receptor-like a	0.011
cobl	cordon-bleu homolog (mouse)	0.011
fzd9b	frizzled homolog 9b	0.011
ctsk	cathepsin K	0.011
adora2b	adenosine A2b receptor	0.011
itgav	integrin, alpha V	0.011
coe2	coe2	0.011
lhx9	LIM homeobox 9	0.011
zgc:55891	zgc:55891	0.010
runx2a	runt-related transcription factor 2a	0.010
ubiad1	UbiA prenyltransferase domain containing 1	0.010
selp	selectin P	0.010
wnt1	wingless-type MMTV integration site family, member 1	0.010	Mouse Fly
mnx1	motor neuron and pancreas homeobox 1	0.010
mab21l2	mab-21-like 2	0.010
yes1	v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1	0.010
tlr9	toll-like receptor 9	0.010
grhl2a	grainyhead-like 2a (Drosophila)	0.010
shmt2	serine hydroxymethyltransferase 2 (mitochondrial)	0.010
trpv6	transient receptor potential cation channel, subfamily V, member 6	0.010
cyp24a1	cytochrome P450, family 24, subfamily A, polypeptide 1	0.010
pdlim2	PDZ and LIM domain 2 (mystique)	0.010