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Danio rerio

3 genes annotated in zebrafish

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cartilage condensation

GO:0001502

The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "cartilage condensation"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "cartilage condensation" (in gray)

Name	Description	Probability	Func Analog Organism
col2a1a	collagen type II, alpha-1a	0.976	Mouse
runx2b	runt-related transcription factor 2b	0.660
hapln1a	hyaluronan and proteoglycan link protein 1a	0.555
myod1	myogenic differentiation 1	0.526
gsc	goosecoid	0.457
wnt9a	wingless-type MMTV integration site family, member 9A	0.447
loxl3b	lysyl oxidase-like 3b	0.359
ptch1	patched 1	0.342
jam2b	junctional adhesion molecule 2b	0.308
bmp4	bone morphogenetic protein 4	0.307
sox9a	SRY-box containing gene 9a	0.287	Mouse
tcf21	transcription factor 21	0.271
nkx3.2	NK3 homeobox 2	0.258
col11a2	collagen type XI alpha-2	0.243
col10a1	collagen, type X, alpha 1	0.233
sulf1	sulfatase 1	0.224
barx1	BarH-like homeobox 1	0.217
dlx6a	distal-less homeobox gene 6a	0.209
dlx3b	distal-less homeobox gene 3b	0.202
hand2	heart and neural crest derivatives expressed transcript 2	0.180
osr2	odd-skipped related 2 (Drosophila)	0.154
grem2	gremlin 2, cysteine knot superfamily	0.153
nadl1.1	neural adhesion molecule L1.1	0.152
bmp2b	bone morphogenetic protein 2b	0.151
dlx5a	distal-less homeobox gene 5a	0.149
sox10	SRY-box containing gene 10	0.147
nkx2.3	NK2 transcription factor related 3	0.139
wnt9b	wingless-type MMTV integration site family, member 9B	0.133
il17rd	interleukin 17 receptor D	0.132
shha	sonic hedgehog a	0.130
crim1	cysteine rich transmembrane BMP regulator 1 (chordin like)	0.126
sp7	Sp7 transcription factor	0.124
runx2a	runt-related transcription factor 2a	0.122
satb2	SATB homeobox 2	0.112
bmp2a	bone morphogenetic protein 2a	0.109
pea3	ETS-domain transcription factor pea3	0.104
fzd2	frizzled homolog 2	0.102
LOC556647	GDNF family receptor alpha-4-like	0.102
tgfb3	transforming growth factor, beta 3	0.093
fgf8a	fibroblast growth factor 8 a	0.089
dlx2a	distal-less homeobox gene 2a	0.085
col5a1	procollagen, type V, alpha 1	0.083
brpf1	bromodomain and PHD finger containing, 1	0.081
jam2a	junctional adhesion molecule 2a	0.078
dspa	desmoplakin a	0.073
myog	myogenin	0.072
mkxa	mohawk homeobox a	0.072
utx	ubiquitously transcribed tetratricopeptide repeat, X chromosome	0.071
snai1a	snail homolog 1a (Drosophila)	0.068
col1a2	collagen, type I, alpha 2	0.067
lect1	leukocyte cell derived chemotaxin 1	0.065
fras1	Fraser syndrome 1	0.062
osr1	odd-skipped related 1 (Drosophila)	0.061
col27a1a	collagen, type XXVII, alpha 1a	0.059
pax9	paired box gene 9	0.058
rcn3	reticulocalbin 3, EF-hand calcium binding domain	0.058
frem3	Fras1 related extracellular matrix 3	0.057
alx4a	aristaless-like homeobox 4a	0.057
fgf10a	fibroblast growth factor 10a	0.057
efemp2	EGF-containing fibulin-like extracellular matrix protein 2	0.057
epyc	epiphycan	0.057
plod2	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	0.056
gpr126	G protein-coupled receptor 126	0.056
bmper	BMP binding endothelial regulator	0.055
erg	v-ets erythroblastosis virus E26 oncogene like (avian)	0.054
ptch2	patched 2	0.053
aldh1a2	aldehyde dehydrogenase 1 family, member A2	0.052
edn1	endothelin 1	0.051
si:ch211-166a6.5	si:ch211-166a6.5	0.051
fkbp10	FK506 binding protein 10	0.045
notch2	notch homolog 2	0.043
sdprb	serum deprivation response b	0.041
zgc:158603	zgc:158603	0.039
ptpn21	protein tyrosine phosphatase, non-receptor type 21	0.039
npnt	nephronectin	0.038
itga5	integrin, alpha 5 (fibronectin receptor, alpha polypeptide)	0.037
acana	aggrecan a	0.037
msxe	muscle segment homeobox E	0.037
cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1	0.037
igf2a	insulin-like growth factor 2a	0.036
lzts2a	leucine zipper, putative tumor suppressor 2a	0.036
hfe2	hemochromatosis type 2	0.036
col1a1a	collagen, type I, alpha 1a	0.036
snai2	snail homolog 2 (Drosophila)	0.036
jam3b	junctional adhesion molecule 3b	0.036
tbx2a	T-box gene 2a	0.035
ctgf	connective tissue growth factor	0.035	Mouse
gdf6a	growth differentiation factor 6a	0.034
pdgfrl	platelet-derived growth factor receptor-like	0.034
crip2	cysteine-rich protein 2	0.032
tbx1	T-box 1	0.031
col11a1b	collagen type XI alpha-1b and collagen, type XI, alpha 1b	0.031
hoxd9a	homeo box D9a	0.031
sb:cb166	sb:cb166	0.031
fli1a	friend leukemia integration 1a	0.031
atp1a1a.4	ATPase, Na+/K+ transporting, alpha 1a.4 polypeptide	0.030
alx4b	aristaless-like homeobox 4b	0.029
twist2	twist2	0.029
cart1	cartilage paired-class homeoprotein 1	0.029
cast	calpastatin	0.029
bmp3	bone morphogenetic protein 3	0.029
meox1	mesenchyme homeobox 1	0.029
dsg2	desmoglein 2	0.028
tp63	tumor protein p63	0.028
tbx18	T-box 18	0.028
myf5	myogenic factor 5	0.028	Mouse
si:dkey-145p14.5	si:dkey-145p14.5	0.028
klf4a	Kruppel-like transcription factor 4a	0.027
lmo7a	LIM domain only 7a	0.027
sox9b	SRY-box containing gene 9b	0.027
lbx2	ladybird homeobox homolog 2 (Drosophila)	0.027
spry4	sprouty (Drosophila) homolog 4	0.027
prkcz	protein kinase C, zeta	0.026
sparc	secreted acidic cysteine rich glycoprotein	0.026
foxa3	forkhead box A3	0.026
rag1	recombination activating gene 1	0.026
hoxa13b	homeo box A13b	0.025
si:ch211-173b8.2	si:ch211-173b8.2	0.025
hoxc8a	homeo box C8a	0.025
mstna	myostatin a	0.025
slit3	slit (Drosophila) homolog 3	0.025
sema3ab	semaphorin 3ab	0.025
slc20a1a	solute carrier family 20, member 1a	0.025
zgc:92429	zgc:92429	0.025
trpv4	transient receptor potential cation channel, subfamily V, member 4	0.024
vdra	vitamin D receptor a	0.024
cthrc1a	collagen triple helix repeat containing 1a	0.024
dlx4a	distal-less homeobox gene 4a	0.024
ednra	endothelin receptor type A	0.024
fabp2	fatty acid binding protein 2, intestinal	0.023
plod1a	procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1a	0.023
xbp1	X-box binding protein 1	0.023
mxi1	max interacting protein	0.023
frzb	frizzled-related protein	0.023
col27a1b	collagen, type XXVII, alpha 1b	0.023
nog3	noggin 3	0.022
jag1b	jagged 1b	0.022
kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	0.022
prdm16	PR domain containing 16	0.022
tbx22	T-box 22	0.022
vgll4l	vestigial like 4 like	0.022
col9a2	procollagen, type IX, alpha 2	0.021
p2rx2	purinergic receptor P2X, ligand-gated ion channel, 2	0.021
bambia	BMP and activin membrane-bound inhibitor (Xenopus laevis) homolog a	0.021
si:ch211-9d9.3	si:ch211-9d9.3	0.021
col8a1a	collagen, type VIII, alpha 1a	0.021
surf4l	surfeit gene 4, like	0.021
tbx5b	T-box 5b	0.021
tfeb	transcription factor EB	0.021
mst1	macrophage stimulating 1 (hepatocyte growth factor-like)	0.020
rps6kal	ribosomal protein S6 kinase, like	0.020
igfbp3	insulin-like growth factor binding protein 3	0.020
si:dkey-97i18.2	si:dkey-97i18.2	0.020
pknox1.2	pbx/knotted 1 homeobox 1.2	0.020
nfkbiab	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b	0.020
parvb	parvin, beta	0.019
cdh11	cadherin 11, osteoblast	0.019
has2	hyaluronan synthase 2	0.019
thop1	thimet oligopeptidase 1	0.019
anxa2b	annexin A2b	0.019
wif1	wnt inhibitory factor 1	0.019
trpv1	transient receptor potential cation channel subfamily V member 1	0.019
ptpra	protein tyrosine phosphatase, receptor type, A	0.018
setd5	SET domain containing 5	0.018
krt8	keratin 8	0.018
faf1	Fas associated factor 1	0.018
tgfbr2	transforming growth factor, beta receptor II	0.018
ankrd1b	ankyrin repeat domain 1b (cardiac muscle)	0.018
klf2b	Kruppel-like factor 2b	0.018
ripk2	receptor-interacting serine-threonine kinase 2	0.017
egr1	early growth response 1	0.017
mknk2a	MAP kinase-interacting serine/threonine kinase 2a	0.017
nrp1b	neuropilin 1b	0.017
cyp26c1	cytochrome P450, family 26, subfamily C, polypeptide 1	0.017
sh3gl1b	SH3-domain GRB2-like 1b	0.017
LOC100000500	sclerostin-like	0.017
fgf20b	fibroblast growth factor 20b	0.017
tfap2c	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	0.017
foxa1	forkhead box A1	0.016
cry1b	cryptochrome 1b	0.016
mbtps1	membrane-bound transcription factor protease, site 1	0.016
nrf1	nuclear respiratory factor 1	0.016
hsf1	heat shock transcription factor 1	0.016
emilin3a	elastin microfibril interfacer 3a	0.016
phex	phosphate regulating gene with homologues to endopeptidases on the X chromosome	0.016
rasl11b	RAS-like, family 11, member B	0.016
wt1a	wilms tumor 1a	0.016
rab28	RAB28, member RAS oncogene family	0.016
evpl	envoplakin	0.016
ppip5k1	diphosphoinositol pentakisphosphate kinase 1	0.016
zgc:85838	zgc:85838	0.016
tfe3a	transcription factor binding to IGHM enhancer 3a	0.016
btg2	B-cell translocation gene 2	0.016
txlnba	taxilin beta a	0.016
hcst	hematopoietic cell signal transducer	0.015
plod3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	0.015
plcb3	phospholipase C, beta 3 (phosphatidylinositol-specific)	0.015
chrna4	cholinergic receptor, nicotinic, alpha 4	0.015
pho	phoenix	0.015
barx2	BarH-like homeobox 2	0.015	Mouse
myhz2	myosin, heavy polypeptide 2, fast muscle specific	0.015
pkp3	plakophilin 3	0.015
sb:cb288	sb:cb288	0.015
plag1	pleiomorphic adenoma gene 1	0.015
zgc:64114	zgc:64114	0.015
col5a3	collagen, type V, alpha 3	0.015
eng1a	engrailed 1a	0.015
gpr133	G protein-coupled receptor 133	0.015
xylt1	xylosyltransferase 1	0.015
gadd45ba	growth arrest and DNA-damage-inducible, beta a	0.015
cdh5	cadherin 5	0.015
tpp1	tripeptidyl peptidase I	0.015
per2	period homolog 2 (Drosophila)	0.014
dachb	dachshund b	0.014
pxn	paxillin	0.014
fes	feline sarcoma oncogene	0.014
celsr2	cadherin, EGF LAG seven-pass G-type receptor 2 and cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	0.014
zgc:63663	zgc:63663	0.014
notch1a	notch homolog 1a	0.014
uxs1	UDP-glucuronic acid decarboxylase 1	0.014
dag1	dystroglycan 1	0.014
gon4l	gon-4-like (C.elegans)	0.014
ms4a17a.5	membrane-spanning 4-domains, subfamily A, member 17A.5	0.014
th	tyrosine hydroxylase	0.014
cldnc	claudin c	0.014
itgb1b	integrin, beta 1b	0.014
zgc:110426	zgc:110426	0.014
renbp	renin binding protein	0.014
foxi1	forkhead box I1	0.014
six1b	sine oculis homeobox homolog 1b	0.013
sec14l1	SEC14-like 1 (S. cerevisiae)	0.013
dmrt2a	doublesex and mab-3 related transcription factor 2a	0.013
fgf24	fibroblast growth factor 24	0.013
sept9b	septin 9b	0.013
rchy1	ring finger and CHY zinc finger domain containing 1	0.013
trim2a	tripartite motif-containing 2a	0.013
zgc:92242	zgc:92242	0.013
hoxa10b	homeo box A10b	0.013
nyx	nyctalopin	0.013
p2rx3b	purinergic receptor P2X, ligand-gated ion channel, 3b	0.013
tsen54	tRNA splicing endonuclease 54 homolog (S. cerevisiae)	0.013
ocrl	oculocerebrorenal syndrome of Lowe	0.013
f2rl1.1	coagulation factor II (thrombin) receptor-like 1.1	0.013
LOC100334210	growth/differentiation factor 5-like	0.013
si:ch211-134j6.3	si:ch211-134j6.3	0.013
zgc:85866	zgc:85866	0.013
met	met proto-oncogene (hepatocyte growth factor receptor)	0.013
itga3b	integrin, alpha 3b	0.013
im:7165141	im:7165141	0.013
hoxa11a	homeo box A11a	0.013
LOC100332245	cordon-bleu protein-like 1-like	0.013
fgf20a	fibroblast growth factor 20a	0.013
lbr	lamin B receptor	0.013
LOC567547	5,10-methylenetetrahydrofolate reductase (NADPH)-like	0.013
epha4b	eph receptor A4b	0.013
slc25a22	solute carrier family 25 (mitochondrial carrier: glutamate), member 22	0.013
ing5	inhibitor of growth family, member 5a	0.013
pdzrn3	PDZ domain containing RING finger 3 and PDZ domain containing ring finger 3	0.013
igf1	insulin-like growth factor 1	0.013
esr1	estrogen receptor 1	0.013
zgc:152778	zgc:152778	0.013
smad3a	MAD homolog 3a (Drosophila)	0.013
suv420h2	suppressor of variegation 4-20 homolog 2 (Drosophila)	0.013
bglap	bone gamma-carboxyglutamate (gla) protein	0.012
ihha	Indian hedgehog homolog a	0.012
bmp7b	bone morphogenetic protein 7b	0.012
ncor2	nuclear receptor co-repressor 2	0.012
hmx1	H6 homeo box 1	0.012
LOC793111	uncharacterized protein C5orf35-like	0.012
jup	junction plakoglobin	0.012
hoxa11b	homeo box A11b	0.012
csrnp1a	cysteine-serine-rich nuclear protein 1a	0.012
top2b	topoisomerase (DNA) II beta	0.012
cldna	claudin a	0.012
fos	v-fos FBJ murine osteosarcoma viral oncogene homolog	0.012
smyd1a	SET and MYND domain containing 1a	0.012
quo	quattro	0.012
dnajc24	DnaJ (Hsp40) homolog, subfamily C, member 24	0.012
hoxa9b	homeo box A9b	0.012
twist1a	twist1a	0.012
cyr61	cysteine-rich, angiogenic inducer, 61	0.012
itgb6	integrin, beta 6	0.012
smc1al	structural maintenance of chromosomes 1A, like	0.012
cdc42ep1	CDC42 effector protein (Rho GTPase binding) 1	0.012
si:dkey-177e13.4	si:dkey-177e13.4	0.012
lrig1	leucine-rich repeats and immunoglobulin-like domains 1	0.012
pkp1	plakophilin 1	0.012
usp25	ubiquitin specific protease 25	0.012
nhsa	Nance-Horan syndrome a (human)	0.012
perp	PERP, TP53 apoptosis effector	0.012
rapsn	receptor-associated protein of the synapse, 43kD	0.012
epha2	eph receptor A2	0.012
chrna1	cholinergic receptor, nicotinic, alpha polypeptide 1	0.012
sdc2	syndecan 2	0.012
mef2ca	myocyte enhancer factor 2ca	0.012
zgc:103534	zgc:103534	0.011
golgb1	golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1	0.011
zmynd11	zinc finger, MYND domain containing 11	0.011
vmhc	ventricular myosin heavy chain	0.011
tbx15	T-box 15	0.011
si:ch211-152c2.3	si:ch211-152c2.3	0.011
fstb	follistatin b	0.011
or115-15	odorant receptor, family F, subfamily 115, member 15	0.011
dcn	decorin	0.011
stat5.1	signal transducer and activator of transcription 5.1	0.011
gdf11	growth differentiation factor 11	0.011
pthlh	parathyroid hormone-like hormone	0.011
fam125ba	family with sequence similarity 125, member B, duplicate a	0.011
nfatc1	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	0.011
irgq1	immunity-related GTPase family, q1	0.011
ambra1	autophagy/beclin-1 regulator 1	0.011
wtip	Wilms tumor 1 interacting protein	0.011
rbfox2	RNA binding protein, fox-1 homolog (C. elegans) 2	0.011
lpin1	lipin 1	0.011
ftr82	finTRIM family, member 82	0.011
zgc:136894	zgc:136894	0.011
hic1	hypermethylated in cancer 1	0.011
ints6	integrator complex subunit 6	0.011
si:dkey-194e6.1	si:dkey-194e6.1	0.011
bmp16	bone morphogenetic protein 16	0.011
col4a2	collagen, type IV, alpha 2	0.011
jak1	Janus kinase 1	0.011
si:dkeyp-7c9.1	si:dkeyp-7c9.1	0.011
gnsb	glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID), b	0.011
tnfrsf21	tumor necrosis factor receptor superfamily, member 21	0.011
mgp	matrix Gla protein	0.011
cxadr	coxsackie virus and adenovirus receptor	0.011
pmp22b	peripheral myelin protein 22b	0.011
cd151	CD151 molecule	0.011
arl4aa	ADP-ribosylation factor-like 4aa	0.011
hoxd12a	homeo box D12a	0.011
tcf7	transcription factor 7 (T-cell specific, HMG-box)	0.011
zgc:92758	zgc:92758	0.011
ccr12.3	chemokine (C-C motif) receptor 12.3	0.011
ddx26b	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	0.011
slc6a19b	solute carrier family 6 (neurotransmitter transporter), member 19b	0.011
zgc:111821	zgc:111821	0.011
LOC562331	transmembrane protein 136-like	0.011
prox1	prospero-related homeobox gene 1	0.011
thrb	thyroid hormone receptor beta	0.011
atf7a	activating transcription factor 7a	0.011
syk	spleen tyrosine kinase	0.010
ripply2	ripply2	0.010
hdac4	histone deacetylase 4	0.010
ek1	eph-like kinase 1	0.010
murc	muscle-related coiled-coil protein	0.010
sema3d	semaphorin 3d	0.010
epha4l	eph receptor A4, like	0.010
dnaja	DnaJ (Hsp40) homolog, subfamily A member	0.010
zgc:136817	zgc:136817	0.010
spry1	sprouty homolog 1 (Drosophila)	0.010
mc5rb	melanocortin 5b receptor	0.010
gli1	GLI-Kruppel family member 1	0.010
id3	inhibitor of DNA binding 3	0.010
apex2	APEX nuclease (apurinic/apyrimidinic endonuclease) 2	0.010
hsf2	heat shock factor 2	0.010
cited3	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 3	0.010
unc119a	unc-119 homolog a (C. elegans)	0.010
st3gal2l	ST3 beta-galactoside alpha-2,3-sialyltransferase 2, like	0.010
gatsl2	GATS protein-like 2	0.010
zgc:77799	zgc:77799	0.010
id:ibd2573	id:ibd2573	0.010
zgc:73328	zgc:73328	0.010
rassf7b	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7b	0.010
slc26a1	solute carrier family 26 (sulfate transporter), member 1	0.010
vasp	vasodilator-stimulated phosphoprotein	0.010
mef2a	myocyte enhancer factor 2a	0.010
src	v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian)	0.010
slc43a3a	solute carrier family 43, member 3a	0.010
zfyve28	zinc finger, FYVE domain containing 28	0.010
xirp1	xin actin-binding repeat containing 1	0.010
p4ha2	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 2	0.010
csk	c-src tyrosine kinase	0.010